mirror of
https://github.com/wassname/mammoviews.git
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Dmytro S Lituiev
21 lines
581 B
Bash
21 lines
581 B
Bash
#!/bin/bash
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filelist=$1
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OUT_DIRECTORY="/data/UCSF_MAMMO/2017-07-png-16bit"
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TMPFILE="tmp.dcm"
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nn=0
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for file in $filelist; do
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nn=$((nn+1))
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dirn_=$(dirname $file)
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id=`echo $file | awk -v FS="/" '{for (nn=NF-3;nn<NF;nn++){ printf $nn "_" }; print $NF }'`
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id=${id%.dcm}
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#echo $id;
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# gdcmconv --raw "$file" $TMPFILE
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# convert $TMPFILE -resize 299x299! $OUT_DIRECTORY/$id.png
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gdcmconv --raw "$file" /dev/stdout | convert /dev/stdin -depth 16 -resize 299x299! $OUT_DIRECTORY/$id.png
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#-depth
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if [ $((nn % 40)) -eq 0 ]; then
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echo "$nn"
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fi
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done
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