From 02917ab3e5af4279d5c71fbc4c1145074dda32d3 Mon Sep 17 00:00:00 2001 From: hrntsm Date: Fri, 22 Sep 2023 21:05:12 +0900 Subject: [PATCH 01/84] Add redirect to pareto front --- .../ts/components/GraphParetoFront.tsx | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/optuna_dashboard/ts/components/GraphParetoFront.tsx b/optuna_dashboard/ts/components/GraphParetoFront.tsx index abcf667d..0e3f1daa 100644 --- a/optuna_dashboard/ts/components/GraphParetoFront.tsx +++ b/optuna_dashboard/ts/components/GraphParetoFront.tsx @@ -35,6 +35,21 @@ export const GraphParetoFront: FC<{ useEffect(() => { if (study != null) { plotParetoFront(study, objectiveXId, objectiveYId, theme.palette.mode) + const element = document.getElementById(plotDomId) + if (element != null) { + // @ts-ignore + element.on("plotly_click", function (data) { + const plotTextInfo = JSON.parse( + data.points[0].text.replace(/
/g, "") + ) + const link =URL_PREFIX + `/studies/${study.id}}/trials?numbers=${plotTextInfo.number}` + window.location.href = link + }) + return () => { + // @ts-ignore + element.removeAllListeners("plotly_click") + } + } } }, [study, objectiveXId, objectiveYId, theme.palette.mode]) From 186f7ac95201de6cf6ccc8c60e9d9cd84dafd54e Mon Sep 17 00:00:00 2001 From: hrntsm Date: Fri, 22 Sep 2023 21:16:33 +0900 Subject: [PATCH 02/84] Add redirect to history --- optuna_dashboard/ts/components/GraphHistory.tsx | 15 +++++++++++++++ .../ts/components/GraphParetoFront.tsx | 4 +++- 2 files changed, 18 insertions(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index 280c02fc..d79afa70 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -69,6 +69,21 @@ export const GraphHistory: FC<{ theme.palette.mode, markerSize ) + const element = document.getElementById(plotDomId) + if (element != null && studies.length === 1) { + // @ts-ignore + element.on("plotly_click", function (data) { + const link = + URL_PREFIX + + `/studies/${studies[0].id}}/trials?numbers=${data.points[0].x}` + console.log(link) + window.location.href = link + }) + return () => { + // @ts-ignore + element.removeAllListeners("plotly_click") + } + } }, [studies, selected, logScale, xAxis, theme.palette.mode, markerSize]) const handleObjectiveChange = (event: SelectChangeEvent) => { diff --git a/optuna_dashboard/ts/components/GraphParetoFront.tsx b/optuna_dashboard/ts/components/GraphParetoFront.tsx index 0e3f1daa..b73a49cb 100644 --- a/optuna_dashboard/ts/components/GraphParetoFront.tsx +++ b/optuna_dashboard/ts/components/GraphParetoFront.tsx @@ -42,7 +42,9 @@ export const GraphParetoFront: FC<{ const plotTextInfo = JSON.parse( data.points[0].text.replace(/
/g, "") ) - const link =URL_PREFIX + `/studies/${study.id}}/trials?numbers=${plotTextInfo.number}` + const link = + URL_PREFIX + + `/studies/${study.id}}/trials?numbers=${plotTextInfo.number}` window.location.href = link }) return () => { From 3e822307f97b22c73bf8ac73f05a27f1ccd07701 Mon Sep 17 00:00:00 2001 From: hrntsm Date: Fri, 22 Sep 2023 21:17:24 +0900 Subject: [PATCH 03/84] Remove console.log output --- optuna_dashboard/ts/components/GraphHistory.tsx | 1 - 1 file changed, 1 deletion(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index d79afa70..4eb5588d 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -76,7 +76,6 @@ export const GraphHistory: FC<{ const link = URL_PREFIX + `/studies/${studies[0].id}}/trials?numbers=${data.points[0].x}` - console.log(link) window.location.href = link }) return () => { From 9d510fb64254b45fe4eacc9515f0563b742b233a Mon Sep 17 00:00:00 2001 From: hrntsm Date: Sun, 24 Sep 2023 21:43:28 +0900 Subject: [PATCH 04/84] Remove redundant '}' --- optuna_dashboard/ts/components/GraphHistory.tsx | 2 +- optuna_dashboard/ts/components/GraphParetoFront.tsx | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index 4eb5588d..52c3fceb 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -75,7 +75,7 @@ export const GraphHistory: FC<{ element.on("plotly_click", function (data) { const link = URL_PREFIX + - `/studies/${studies[0].id}}/trials?numbers=${data.points[0].x}` + `/studies/${studies[0].id}/trials?numbers=${data.points[0].x}` window.location.href = link }) return () => { diff --git a/optuna_dashboard/ts/components/GraphParetoFront.tsx b/optuna_dashboard/ts/components/GraphParetoFront.tsx index b73a49cb..35de2315 100644 --- a/optuna_dashboard/ts/components/GraphParetoFront.tsx +++ b/optuna_dashboard/ts/components/GraphParetoFront.tsx @@ -44,7 +44,7 @@ export const GraphParetoFront: FC<{ ) const link = URL_PREFIX + - `/studies/${study.id}}/trials?numbers=${plotTextInfo.number}` + `/studies/${study.id}/trials?numbers=${plotTextInfo.number}` window.location.href = link }) return () => { From 37f0709bc85ac3949898ea6b28b27d2d81fa828c Mon Sep 17 00:00:00 2001 From: hrntsm Date: Sun, 24 Sep 2023 21:53:34 +0900 Subject: [PATCH 05/84] Update redirect to work with multi studies --- optuna_dashboard/ts/components/GraphHistory.tsx | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index 52c3fceb..da09fb60 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -70,12 +70,14 @@ export const GraphHistory: FC<{ markerSize ) const element = document.getElementById(plotDomId) - if (element != null && studies.length === 1) { + if (element != null && studies.length >= 1) { // @ts-ignore element.on("plotly_click", function (data) { const link = URL_PREFIX + - `/studies/${studies[0].id}/trials?numbers=${data.points[0].x}` + `/studies/${ + studies[Math.floor(data.points[0].curveNumber / 2)].id + }/trials?numbers=${data.points[0].x}` window.location.href = link }) return () => { From 475eaa78e188045253ad07d60e5eb45e2bf0a87b Mon Sep 17 00:00:00 2001 From: hrntsm Date: Sun, 24 Sep 2023 21:56:23 +0900 Subject: [PATCH 06/84] Update to not redirect when selecting lines --- optuna_dashboard/ts/components/GraphHistory.tsx | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index da09fb60..65f845a2 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -73,12 +73,14 @@ export const GraphHistory: FC<{ if (element != null && studies.length >= 1) { // @ts-ignore element.on("plotly_click", function (data) { - const link = - URL_PREFIX + - `/studies/${ - studies[Math.floor(data.points[0].curveNumber / 2)].id - }/trials?numbers=${data.points[0].x}` - window.location.href = link + if (data.points[0].data.mode !== "lines") { + const link = + URL_PREFIX + + `/studies/${ + studies[Math.floor(data.points[0].curveNumber / 2)].id + }/trials?numbers=${data.points[0].x}` + window.location.href = link + } }) return () => { // @ts-ignore From d1d5f3c65159c3d9aa521f13cccd2dc84b8822f2 Mon Sep 17 00:00:00 2001 From: hrntsm Date: Fri, 29 Sep 2023 13:06:38 +0900 Subject: [PATCH 07/84] Update to use useNavigate --- optuna_dashboard/ts/components/GraphHistory.tsx | 12 +++++++----- optuna_dashboard/ts/components/GraphParetoFront.tsx | 8 +++++--- 2 files changed, 12 insertions(+), 8 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index 65f845a2..99db2524 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -21,6 +21,7 @@ import { Target, useObjectiveAndUserAttrTargetsFromStudies, } from "../trialFilter" +import { useNavigate } from "react-router-dom" const plotDomId = "graph-history" @@ -37,6 +38,7 @@ export const GraphHistory: FC<{ includePruned: boolean }> = ({ studies, logScale, includePruned }) => { const theme = useTheme() + const navigate = useNavigate() const [xAxis, setXAxis] = useState< "number" | "datetime_start" | "datetime_complete" >("number") @@ -74,12 +76,12 @@ export const GraphHistory: FC<{ // @ts-ignore element.on("plotly_click", function (data) { if (data.points[0].data.mode !== "lines") { - const link = + navigate( URL_PREFIX + - `/studies/${ - studies[Math.floor(data.points[0].curveNumber / 2)].id - }/trials?numbers=${data.points[0].x}` - window.location.href = link + `/studies/${ + studies[Math.floor(data.points[0].curveNumber / 2)].id + }/trials?numbers=${data.points[0].x}` + ) } }) return () => { diff --git a/optuna_dashboard/ts/components/GraphParetoFront.tsx b/optuna_dashboard/ts/components/GraphParetoFront.tsx index 35de2315..893d589d 100644 --- a/optuna_dashboard/ts/components/GraphParetoFront.tsx +++ b/optuna_dashboard/ts/components/GraphParetoFront.tsx @@ -13,6 +13,7 @@ import { } from "@mui/material" import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { makeHovertext } from "../graphUtil" +import { useNavigate } from "react-router-dom" const plotDomId = "graph-pareto-front" @@ -20,6 +21,7 @@ export const GraphParetoFront: FC<{ study: StudyDetail | null }> = ({ study = null }) => { const theme = useTheme() + const navigate = useNavigate() const [objectiveXId, setObjectiveXId] = useState(0) const [objectiveYId, setObjectiveYId] = useState(1) const objectiveNames: string[] = study?.objective_names || [] @@ -42,10 +44,10 @@ export const GraphParetoFront: FC<{ const plotTextInfo = JSON.parse( data.points[0].text.replace(/
/g, "") ) - const link = + navigate( URL_PREFIX + - `/studies/${study.id}/trials?numbers=${plotTextInfo.number}` - window.location.href = link + `/studies/${study.id}/trials?numbers=${plotTextInfo.number}` + ) }) return () => { // @ts-ignore From 563775e904d585ab736f9112e7049e7010fdefae Mon Sep 17 00:00:00 2001 From: hrntsm Date: Fri, 29 Sep 2023 14:19:34 +0900 Subject: [PATCH 08/84] Fix infeasible point redirect --- .../ts/components/GraphHistory.tsx | 21 ++++++++++++++++--- 1 file changed, 18 insertions(+), 3 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index 99db2524..b717183a 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -76,11 +76,26 @@ export const GraphHistory: FC<{ // @ts-ignore element.on("plotly_click", function (data) { if (data.points[0].data.mode !== "lines") { + let studyId = 1 + if (data.points[0].data.name.includes("Infeasible Trial of")) { + const studyInfo: { id: number; name: string }[] = [] + studies.forEach((study) => { + studyInfo.push({ id: study.id, name: study.name }) + }) + const dataPointStudyName = data.points[0].data.name.replace( + "Infeasible Trial of ", + "" + ) + const targetId = studyInfo.find((s) => s.name === dataPointStudyName)?.id + if (targetId !== undefined) { + studyId = targetId + } + } else { + studyId = studies[Math.floor(data.points[0].curveNumber / 2)].id + } navigate( URL_PREFIX + - `/studies/${ - studies[Math.floor(data.points[0].curveNumber / 2)].id - }/trials?numbers=${data.points[0].x}` + `/studies/${studyId}/trials?numbers=${data.points[0].x}` ) } }) From db2f6310c85f98f9f288f6e50ab7811b860f0e7f Mon Sep 17 00:00:00 2001 From: hrntsm Date: Fri, 29 Sep 2023 14:37:40 +0900 Subject: [PATCH 09/84] Apply formatter --- optuna_dashboard/ts/components/GraphHistory.tsx | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index b717183a..a2b58c14 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -86,7 +86,9 @@ export const GraphHistory: FC<{ "Infeasible Trial of ", "" ) - const targetId = studyInfo.find((s) => s.name === dataPointStudyName)?.id + const targetId = studyInfo.find( + (s) => s.name === dataPointStudyName + )?.id if (targetId !== undefined) { studyId = targetId } From 52c090a9576e988737d702da15573b7b2a51050a Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Tue, 12 Dec 2023 13:26:44 +0100 Subject: [PATCH 10/84] Make running trials in timeline plot visible --- .../ts/components/GraphTimeline.tsx | 33 +++++++++++++++++-- 1 file changed, 30 insertions(+), 3 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index cc0f7f57..29449a9d 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -65,10 +65,30 @@ const plotTimeline = (trials: Trial[], mode: string) => { ) ) ) - const maxDatetime = new Date( + const maxRunDuration = Math.max( + ...lastTrials.map( + (t) => { + const start = t.datetime_start?.getTime() ?? new Date().getTime() + const complete = t.datetime_complete?.getTime() ?? start + return complete - start + } + ) + ) + const hasRunning = maxRunDuration === 0 || lastTrials.some((t) => { + const isRunning = t.state === "Running" + if (!isRunning){ + return false + } + const start = t.datetime_start?.getTime() ?? new Date().getTime() + const now = new Date().getTime() + // This is an ad-hoc handling to check if the trial is running. + return now - start < maxRunDuration * 5 + } + ) + const maxDatetime = hasRunning ? new Date() : new Date( Math.max( ...lastTrials.map( - (t) => t.datetime_start?.getTime() ?? minDatetime.getTime() + (t) => t.datetime_complete?.getTime() ?? minDatetime.getTime() ) ) ) @@ -95,9 +115,16 @@ const plotTimeline = (trials: Trial[], mode: string) => { const makeTrace = (bars: Trial[], state: string, color: string) => { const starts = bars.map((b) => b.datetime_start ?? new Date()) const completes = bars.map((b, i) => b.datetime_complete ?? starts[i]) + const isRunning = state === "Running" + const runDurations = bars.map((b) => { + const start = b.datetime_start?.getTime() ?? new Date().getTime() + const complete = b.datetime_complete?.getTime() ?? start + return !isRunning ? complete - start : maxDatetime.getTime() - start + }) + starts.map((s, i) => Math.max(10, completes[i].getTime() - s.getTime())) const trace: Partial = { type: "bar", - x: starts.map((s, i) => completes[i].getTime() - s.getTime()), + x: runDurations, y: bars.map((b) => b.number), // @ts-ignore: To suppress ts(2322) base: starts.map((s) => s.toISOString()), From 059f4751acc17387eabd723f5caa547b29be63d2 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Tue, 12 Dec 2023 13:32:42 +0100 Subject: [PATCH 11/84] Apply formatter --- .../ts/components/GraphTimeline.tsx | 35 ++++++++++--------- 1 file changed, 18 insertions(+), 17 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index 29449a9d..dfb97bc6 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -66,32 +66,33 @@ const plotTimeline = (trials: Trial[], mode: string) => { ) ) const maxRunDuration = Math.max( - ...lastTrials.map( - (t) => { - const start = t.datetime_start?.getTime() ?? new Date().getTime() - const complete = t.datetime_complete?.getTime() ?? start - return complete - start - } - ) + ...lastTrials.map((t) => { + const start = t.datetime_start?.getTime() ?? new Date().getTime() + const complete = t.datetime_complete?.getTime() ?? start + return complete - start + }) ) - const hasRunning = maxRunDuration === 0 || lastTrials.some((t) => { + const hasRunning = + maxRunDuration === 0 || + lastTrials.some((t) => { const isRunning = t.state === "Running" - if (!isRunning){ + if (!isRunning) { return false } const start = t.datetime_start?.getTime() ?? new Date().getTime() const now = new Date().getTime() // This is an ad-hoc handling to check if the trial is running. return now - start < maxRunDuration * 5 - } - ) - const maxDatetime = hasRunning ? new Date() : new Date( - Math.max( - ...lastTrials.map( - (t) => t.datetime_complete?.getTime() ?? minDatetime.getTime() + }) + const maxDatetime = hasRunning + ? new Date() + : new Date( + Math.max( + ...lastTrials.map( + (t) => t.datetime_complete?.getTime() ?? minDatetime.getTime() + ) + ) ) - ) - ) const layout: Partial = { margin: { l: 50, From 656994f8599d5b8f1d9c6f230454b9cfaec6d251 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Tue, 12 Dec 2023 14:19:36 +0100 Subject: [PATCH 12/84] Refactor the code --- .../ts/components/GraphTimeline.tsx | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index dfb97bc6..a910e494 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -56,6 +56,7 @@ const plotTimeline = (trials: Trial[], mode: string) => { Running: "green", Waiting: "gray", } + const runningKey = "Running" const lastTrials = trials.slice(-maxBars) // To only show last elements const minDatetime = new Date( @@ -66,17 +67,16 @@ const plotTimeline = (trials: Trial[], mode: string) => { ) ) const maxRunDuration = Math.max( - ...lastTrials.map((t) => { + ...trials.map((t) => { const start = t.datetime_start?.getTime() ?? new Date().getTime() const complete = t.datetime_complete?.getTime() ?? start - return complete - start + return t.state === runningKey ? -Infinity : complete - start }) ) const hasRunning = - maxRunDuration === 0 || - lastTrials.some((t) => { - const isRunning = t.state === "Running" - if (!isRunning) { + maxRunDuration === -Infinity || + trials.some((t) => { + if (t.state !== runningKey) { return false } const start = t.datetime_start?.getTime() ?? new Date().getTime() @@ -114,15 +114,14 @@ const plotTimeline = (trials: Trial[], mode: string) => { } const makeTrace = (bars: Trial[], state: string, color: string) => { + const isRunning = state === runningKey const starts = bars.map((b) => b.datetime_start ?? new Date()) - const completes = bars.map((b, i) => b.datetime_complete ?? starts[i]) - const isRunning = state === "Running" const runDurations = bars.map((b) => { const start = b.datetime_start?.getTime() ?? new Date().getTime() const complete = b.datetime_complete?.getTime() ?? start - return !isRunning ? complete - start : maxDatetime.getTime() - start + // By using 1 as the min value, we can recognize these bars at least when zooming in. + return Math.max(1, !isRunning ? complete - start : maxDatetime.getTime() - start) }) - starts.map((s, i) => Math.max(10, completes[i].getTime() - s.getTime())) const trace: Partial = { type: "bar", x: runDurations, From 895e32727aae3650df9abaa0919bca178ea5ad84 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Tue, 12 Dec 2023 14:38:33 +0100 Subject: [PATCH 13/84] Fix hasRunning The last version could get maxRunDuration of zero when we have waiting or failed trials without any complete or pruned trials. It leads to false in the judge of hasRunning. However, in this case, we should be able to say that we have running trials. I fixed this issue in this commit. --- optuna_dashboard/ts/components/GraphTimeline.tsx | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index a910e494..d710a0b1 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -68,13 +68,14 @@ const plotTimeline = (trials: Trial[], mode: string) => { ) const maxRunDuration = Math.max( ...trials.map((t) => { - const start = t.datetime_start?.getTime() ?? new Date().getTime() - const complete = t.datetime_complete?.getTime() ?? start - return t.state === runningKey ? -Infinity : complete - start + return t.datetime_start === undefined || t.datetime_complete === undefined + ? -Infinity + : t.datetime_start.getTime() - t.datetime_complete.getTime() }) ) const hasRunning = - maxRunDuration === -Infinity || + (maxRunDuration === -Infinity && + trials.some((t) => t.state === runningKey)) || trials.some((t) => { if (t.state !== runningKey) { return false @@ -120,7 +121,10 @@ const plotTimeline = (trials: Trial[], mode: string) => { const start = b.datetime_start?.getTime() ?? new Date().getTime() const complete = b.datetime_complete?.getTime() ?? start // By using 1 as the min value, we can recognize these bars at least when zooming in. - return Math.max(1, !isRunning ? complete - start : maxDatetime.getTime() - start) + return Math.max( + 1, + !isRunning ? complete - start : maxDatetime.getTime() - start + ) }) const trace: Partial = { type: "bar", From 7a1f791ced7c893f45b6c3744c2eb3e16063eac7 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Tue, 12 Dec 2023 15:10:03 +0100 Subject: [PATCH 14/84] Debug the maxDateTime --- optuna_dashboard/ts/components/GraphTimeline.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index d710a0b1..1a6e8379 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -70,7 +70,7 @@ const plotTimeline = (trials: Trial[], mode: string) => { ...trials.map((t) => { return t.datetime_start === undefined || t.datetime_complete === undefined ? -Infinity - : t.datetime_start.getTime() - t.datetime_complete.getTime() + : t.datetime_complete.getTime() - t.datetime_start.getTime() }) ) const hasRunning = From df16f7372c1f14c1248f75e1c7ed2c7011119e57 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Sun, 24 Dec 2023 08:48:15 +0100 Subject: [PATCH 15/84] Address some comments by umezawa --- optuna_dashboard/ts/components/GraphTimeline.tsx | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index 1a6e8379..b382def5 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -83,6 +83,10 @@ const plotTimeline = (trials: Trial[], mode: string) => { const start = t.datetime_start?.getTime() ?? new Date().getTime() const now = new Date().getTime() // This is an ad-hoc handling to check if the trial is running. + // We do not check via `trialState` because some trials may have state=RUNNING, + // even if they are not running because of unexpected job kills. + // In this case, we would like to ensure that these trials will not squash the timeline plot + // for the other trials. return now - start < maxRunDuration * 5 }) const maxDatetime = hasRunning @@ -117,13 +121,13 @@ const plotTimeline = (trials: Trial[], mode: string) => { const makeTrace = (bars: Trial[], state: string, color: string) => { const isRunning = state === runningKey const starts = bars.map((b) => b.datetime_start ?? new Date()) - const runDurations = bars.map((b) => { - const start = b.datetime_start?.getTime() ?? new Date().getTime() - const complete = b.datetime_complete?.getTime() ?? start + const runDurations = bars.map((b, i) => { + const startTime = starts[i].getTime() + const completeTime = b.datetime_complete?.getTime() ?? startTime // By using 1 as the min value, we can recognize these bars at least when zooming in. return Math.max( 1, - !isRunning ? complete - start : maxDatetime.getTime() - start + !isRunning ? completeTime - startTime : maxDatetime.getTime() - startTime ) }) const trace: Partial = { From ad25ad9a225df0084786c8f79d4ba4143c2d4002 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Sun, 24 Dec 2023 09:11:01 +0100 Subject: [PATCH 16/84] Refactor based on umezawa's comment --- optuna_dashboard/ts/components/GraphTimeline.tsx | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index b382def5..122f778b 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -123,12 +123,11 @@ const plotTimeline = (trials: Trial[], mode: string) => { const starts = bars.map((b) => b.datetime_start ?? new Date()) const runDurations = bars.map((b, i) => { const startTime = starts[i].getTime() - const completeTime = b.datetime_complete?.getTime() ?? startTime + const completeTime = isRunning + ? maxDatetime.getTime() + : b.datetime_complete?.getTime() ?? startTime // By using 1 as the min value, we can recognize these bars at least when zooming in. - return Math.max( - 1, - !isRunning ? completeTime - startTime : maxDatetime.getTime() - startTime - ) + return Math.max(1, completeTime - startTime) }) const trace: Partial = { type: "bar", From 1c0477e8d9f4629a88d63661cdb6ac94ae025fc9 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Tue, 26 Dec 2023 09:30:26 +0100 Subject: [PATCH 17/84] Change the waiting trials' start time --- optuna_dashboard/ts/components/GraphTimeline.tsx | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphTimeline.tsx b/optuna_dashboard/ts/components/GraphTimeline.tsx index 122f778b..eaa27277 100644 --- a/optuna_dashboard/ts/components/GraphTimeline.tsx +++ b/optuna_dashboard/ts/components/GraphTimeline.tsx @@ -80,8 +80,8 @@ const plotTimeline = (trials: Trial[], mode: string) => { if (t.state !== runningKey) { return false } - const start = t.datetime_start?.getTime() ?? new Date().getTime() const now = new Date().getTime() + const start = t.datetime_start?.getTime() ?? now // This is an ad-hoc handling to check if the trial is running. // We do not check via `trialState` because some trials may have state=RUNNING, // even if they are not running because of unexpected job kills. @@ -120,7 +120,8 @@ const plotTimeline = (trials: Trial[], mode: string) => { const makeTrace = (bars: Trial[], state: string, color: string) => { const isRunning = state === runningKey - const starts = bars.map((b) => b.datetime_start ?? new Date()) + // Waiting trials should not squash other trials, so use `maxDatetime` instead of `new Date()`. + const starts = bars.map((b) => b.datetime_start ?? maxDatetime) const runDurations = bars.map((b, i) => { const startTime = starts[i].getTime() const completeTime = isRunning From e7ea5d17aa198f756c2216f875ad76b172eb7442 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Thu, 21 Dec 2023 09:19:51 +0100 Subject: [PATCH 18/84] Enable users to jump arbitrary page numbers from text field --- optuna_dashboard/ts/components/DataGrid.tsx | 66 ++++++++++++++++++--- 1 file changed, 57 insertions(+), 9 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index adf64e77..626440a7 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -8,10 +8,13 @@ import { TablePagination, TableRow, TableSortLabel, + TextField, Collapse, IconButton, Menu, MenuItem, + Button, + Box, } from "@mui/material" import { styled } from "@mui/system" import KeyboardArrowDownIcon from "@mui/icons-material/KeyboardArrowDown" @@ -43,6 +46,40 @@ interface RowFilter { values: Value[] } +function PaginationTextFieldComponent(props: { + onInputChange: (value: number) => void + maxPageNumber: number +}): React.ReactElement { + // This component is separated from DataGrid to prevent it from updating, + // every time any letters are input. + const { onInputChange, maxPageNumber } = props + const [navigationPage, setNavigationPage] = React.useState("") + + const handleSubmitPageNumber = (event: React.FormEvent) => { + event.preventDefault() + const newPage = parseInt(navigationPage, 10) + setNavigationPage("") // reset the input field + if (Number.isNaN(newPage)) { + return + } + const newPageNumber = newPage <= 0 ? 1 : Math.min(newPage, maxPageNumber) + // 0-indexed. + onInputChange(newPageNumber - 1) + } + + return ( +
+ { + setNavigationPage(e.target.value) + }} + /> + + ) +} + function DataGrid(props: { columns: DataGridColumn[] rows: T[] @@ -119,6 +156,7 @@ function DataGrid(props: { const RootDiv = styled("div")({ width: "100%", }) + const maxPageNumber = Math.ceil(filteredRows.length / rowsPerPage) return ( @@ -177,15 +215,25 @@ function DataGrid(props: { - + {filteredRows.length > 0 ? ( + + + {maxPageNumber > 4 ? ( + setPage(page)} + maxPageNumber={Math.ceil(filteredRows.length / rowsPerPage)} + /> + ) : null} + + ) : null} ) } From 4e48165a2e79f0ab110d05b7e66c1a777079e6ef Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Thu, 21 Dec 2023 09:23:54 +0100 Subject: [PATCH 19/84] Apply linter --- optuna_dashboard/ts/components/DataGrid.tsx | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index 626440a7..b326b0b7 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -13,7 +13,6 @@ import { IconButton, Menu, MenuItem, - Button, Box, } from "@mui/material" import { styled } from "@mui/system" @@ -46,7 +45,7 @@ interface RowFilter { values: Value[] } -function PaginationTextFieldComponent(props: { +function PaginationTextFieldComponent(props: { onInputChange: (value: number) => void maxPageNumber: number }): React.ReactElement { From c792a8bf13f92da80829daab3322fb4c5ca3b70a Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Thu, 21 Dec 2023 16:25:38 +0100 Subject: [PATCH 20/84] Refactor comments --- optuna_dashboard/ts/components/DataGrid.tsx | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index b326b0b7..0ed6e679 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -49,7 +49,7 @@ function PaginationTextFieldComponent(props: { onInputChange: (value: number) => void maxPageNumber: number }): React.ReactElement { - // This component is separated from DataGrid to prevent it from updating, + // This component is separated from DataGrid to prevent `DataGrid` from re-rendering the page, // every time any letters are input. const { onInputChange, maxPageNumber } = props const [navigationPage, setNavigationPage] = React.useState("") @@ -62,7 +62,7 @@ function PaginationTextFieldComponent(props: { return } const newPageNumber = newPage <= 0 ? 1 : Math.min(newPage, maxPageNumber) - // 0-indexed. + // Page is 0-indexed in `TablePagination`. onInputChange(newPageNumber - 1) } @@ -215,6 +215,7 @@ function DataGrid(props: { {filteredRows.length > 0 ? ( + // tslint:disable-next-line: 2590 Date: Fri, 22 Dec 2023 05:06:40 +0100 Subject: [PATCH 21/84] Modify the pagination info label --- optuna_dashboard/ts/components/DataGrid.tsx | 38 ++++++++++++--------- 1 file changed, 21 insertions(+), 17 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index 0ed6e679..b606fde5 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -22,6 +22,7 @@ import CheckBoxOutlineBlankIcon from "@mui/icons-material/CheckBoxOutlineBlank" import CheckBoxIcon from "@mui/icons-material/CheckBox" import FilterListIcon from "@mui/icons-material/FilterList" import ListItemIcon from "@mui/material/ListItemIcon" +import { Margin } from "@mui/icons-material" type Order = "asc" | "desc" @@ -215,24 +216,27 @@ function DataGrid(props: { {filteredRows.length > 0 ? ( - // tslint:disable-next-line: 2590 - - - {maxPageNumber > 4 ? ( - setPage(page)} - maxPageNumber={Math.ceil(filteredRows.length / rowsPerPage)} + <> + {/* tslint:disable-next-line: 2590 */} + + `${page+1} of ${maxPageNumber}`} + onPageChange={handleChangePage} + onRowsPerPageChange={handleChangeRowsPerPage} /> - ) : null} - + {maxPageNumber > 4 ? ( + setPage(page)} + maxPageNumber={maxPageNumber} + /> + ) : null} + + ) : null} ) From 0f08fe03b4322acfdf123062f6bf1bc94ad5123b Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Fri, 22 Dec 2023 05:10:43 +0100 Subject: [PATCH 22/84] Disable tslint in a line --- optuna_dashboard/ts/components/DataGrid.tsx | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index b606fde5..e640ee48 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -22,7 +22,6 @@ import CheckBoxOutlineBlankIcon from "@mui/icons-material/CheckBoxOutlineBlank" import CheckBoxIcon from "@mui/icons-material/CheckBox" import FilterListIcon from "@mui/icons-material/FilterList" import ListItemIcon from "@mui/material/ListItemIcon" -import { Margin } from "@mui/icons-material" type Order = "asc" | "desc" @@ -217,7 +216,7 @@ function DataGrid(props: { {filteredRows.length > 0 ? ( <> - {/* tslint:disable-next-line: 2590 */} + {/* @ts-ignore */} (props: { count={filteredRows.length} rowsPerPage={rowsPerPage} page={page} - labelDisplayedRows={({ page }) => `${page+1} of ${maxPageNumber}`} + labelDisplayedRows={({ page }) => + `${page + 1} of ${maxPageNumber}` + } onPageChange={handleChangePage} onRowsPerPageChange={handleChangeRowsPerPage} /> From 449caf2db2f42b333a628d8cd2b0da1d2b838a6d Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Fri, 22 Dec 2023 05:22:15 +0100 Subject: [PATCH 23/84] Rename some variables for more clarity --- optuna_dashboard/ts/components/DataGrid.tsx | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index e640ee48..87f2b73e 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -46,33 +46,33 @@ interface RowFilter { } function PaginationTextFieldComponent(props: { - onInputChange: (value: number) => void + onPageNumberSubmit: (value: number) => void maxPageNumber: number }): React.ReactElement { // This component is separated from DataGrid to prevent `DataGrid` from re-rendering the page, // every time any letters are input. - const { onInputChange, maxPageNumber } = props - const [navigationPage, setNavigationPage] = React.useState("") + const { onPageNumberSubmit, maxPageNumber } = props + const [specifiedPageText, setSpecifiedPageText] = React.useState("") const handleSubmitPageNumber = (event: React.FormEvent) => { event.preventDefault() - const newPage = parseInt(navigationPage, 10) - setNavigationPage("") // reset the input field + const newPage = parseInt(specifiedPageText, 10) + setSpecifiedPageText("") // reset the input field if (Number.isNaN(newPage)) { return } const newPageNumber = newPage <= 0 ? 1 : Math.min(newPage, maxPageNumber) // Page is 0-indexed in `TablePagination`. - onInputChange(newPageNumber - 1) + onPageNumberSubmit(newPageNumber - 1) } return (
{ - setNavigationPage(e.target.value) + setSpecifiedPageText(e.target.value) }} /> @@ -232,7 +232,7 @@ function DataGrid(props: { /> {maxPageNumber > 4 ? ( setPage(page)} + onPageNumberSubmit={(page) => setPage(page)} maxPageNumber={maxPageNumber} /> ) : null} From 1c3025edfb5ba81619129792726d5389329a9342 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Fri, 22 Dec 2023 09:23:01 +0100 Subject: [PATCH 24/84] Move the text field func to the inside of DataGrid --- optuna_dashboard/ts/components/DataGrid.tsx | 69 +++++++++++---------- 1 file changed, 35 insertions(+), 34 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index 87f2b73e..7a525092 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -45,40 +45,6 @@ interface RowFilter { values: Value[] } -function PaginationTextFieldComponent(props: { - onPageNumberSubmit: (value: number) => void - maxPageNumber: number -}): React.ReactElement { - // This component is separated from DataGrid to prevent `DataGrid` from re-rendering the page, - // every time any letters are input. - const { onPageNumberSubmit, maxPageNumber } = props - const [specifiedPageText, setSpecifiedPageText] = React.useState("") - - const handleSubmitPageNumber = (event: React.FormEvent) => { - event.preventDefault() - const newPage = parseInt(specifiedPageText, 10) - setSpecifiedPageText("") // reset the input field - if (Number.isNaN(newPage)) { - return - } - const newPageNumber = newPage <= 0 ? 1 : Math.min(newPage, maxPageNumber) - // Page is 0-indexed in `TablePagination`. - onPageNumberSubmit(newPageNumber - 1) - } - - return ( -
- { - setSpecifiedPageText(e.target.value) - }} - /> - - ) -} - function DataGrid(props: { columns: DataGridColumn[] rows: T[] @@ -120,6 +86,41 @@ function DataGrid(props: { setPage(0) } + const PaginationTextFieldComponent: React.FC<{ + onPageNumberSubmit: (value: number) => void + maxPageNumber: number + }> = ({ onPageNumberSubmit, maxPageNumber }) => { + // This component is separated from DataGrid to prevent `DataGrid` from re-rendering the page, + // every time any letters are input. + const [specifiedPageText, setSpecifiedPageText] = React.useState("") + + const handleSubmitPageNumber = ( + event: React.FormEvent + ) => { + event.preventDefault() + const newPage = parseInt(specifiedPageText, 10) + setSpecifiedPageText("") // reset the input field + if (Number.isNaN(newPage)) { + return + } + const newPageNumber = newPage <= 0 ? 1 : Math.min(newPage, maxPageNumber) + // Page is 0-indexed in `TablePagination`. + onPageNumberSubmit(newPageNumber - 1) + } + + return ( +
+ { + setSpecifiedPageText(e.target.value) + }} + /> + + ) + } + // Filtering const filteredRows = rows.filter((row, rowIdx) => { if (defaultFilter !== undefined && defaultFilter(row)) { From 71e9ba509641ad8dc258a68d24e07d6c98d036f2 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Mon, 15 Jan 2024 12:25:52 +0100 Subject: [PATCH 25/84] Address some comments by umezawa --- optuna_dashboard/ts/components/DataGrid.tsx | 17 ++++++++--------- 1 file changed, 8 insertions(+), 9 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index 7a525092..8fb52fbf 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -86,7 +86,7 @@ function DataGrid(props: { setPage(0) } - const PaginationTextFieldComponent: React.FC<{ + const PaginationForm: React.FC<{ onPageNumberSubmit: (value: number) => void maxPageNumber: number }> = ({ onPageNumberSubmit, maxPageNumber }) => { @@ -98,21 +98,20 @@ function DataGrid(props: { event: React.FormEvent ) => { event.preventDefault() - const newPage = parseInt(specifiedPageText, 10) - setSpecifiedPageText("") // reset the input field - if (Number.isNaN(newPage)) { - return - } - const newPageNumber = newPage <= 0 ? 1 : Math.min(newPage, maxPageNumber) + const newPageNumber = parseInt(specifiedPageText, 10) // Page is 0-indexed in `TablePagination`. onPageNumberSubmit(newPageNumber - 1) + setSpecifiedPageText("") // reset the input field } return (
{ setSpecifiedPageText(e.target.value) }} @@ -232,7 +231,7 @@ function DataGrid(props: { onRowsPerPageChange={handleChangeRowsPerPage} /> {maxPageNumber > 4 ? ( - setPage(page)} maxPageNumber={maxPageNumber} /> From 7e2313c5d1f07842c480376fa0c7cad74ba72988 Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Mon, 15 Jan 2024 12:43:25 +0100 Subject: [PATCH 26/84] Adjust the height of the text field --- optuna_dashboard/ts/components/DataGrid.tsx | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index 8fb52fbf..7fe5761f 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -107,6 +107,7 @@ function DataGrid(props: { return ( (props: { count={filteredRows.length} rowsPerPage={rowsPerPage} page={page} - labelDisplayedRows={({ page }) => - `${page + 1} of ${maxPageNumber}` - } onPageChange={handleChangePage} onRowsPerPageChange={handleChangeRowsPerPage} /> From a4d0d116255bccf90c47549e61707eea6f20b49c Mon Sep 17 00:00:00 2001 From: y0z Date: Thu, 18 Jan 2024 19:24:20 +0900 Subject: [PATCH 27/84] Show loading message while loading StudySummaries --- optuna_dashboard/ts/action.ts | 7 ++ optuna_dashboard/ts/components/StudyList.tsx | 124 +++++++++++-------- optuna_dashboard/ts/state.ts | 5 + 3 files changed, 81 insertions(+), 55 deletions(-) diff --git a/optuna_dashboard/ts/action.ts b/optuna_dashboard/ts/action.ts index 3c8f06b6..c7429e77 100644 --- a/optuna_dashboard/ts/action.ts +++ b/optuna_dashboard/ts/action.ts @@ -31,6 +31,7 @@ import { artifactIsAvailable, reloadIntervalState, trialsUpdatingState, + studySummariesLoadingState, } from "./state" import { getDominatedTrials } from "./dominatedTrials" @@ -56,6 +57,9 @@ export const actionCreator = () => { const setUploading = useSetRecoilState(isFileUploading) const setTrialsUpdating = useSetRecoilState(trialsUpdatingState) const setArtifactIsAvailable = useSetRecoilState(artifactIsAvailable) + const setStudySummariesLoading = useSetRecoilState( + studySummariesLoadingState + ) const setStudyDetailState = (studyId: number, study: StudyDetail) => { setStudyDetails((prevVal) => { @@ -225,8 +229,10 @@ export const actionCreator = () => { } const updateStudySummaries = (successMsg?: string) => { + setStudySummariesLoading(true) getStudySummariesAPI() .then((studySummaries: StudySummary[]) => { + setStudySummariesLoading(false) setStudySummaries(studySummaries) if (successMsg) { @@ -234,6 +240,7 @@ export const actionCreator = () => { } }) .catch((err) => { + setStudySummariesLoading(false) enqueueSnackbar(`Failed to fetch study list.`, { variant: "error", }) diff --git a/optuna_dashboard/ts/components/StudyList.tsx b/optuna_dashboard/ts/components/StudyList.tsx index 14eaa68b..c5fde6df 100644 --- a/optuna_dashboard/ts/components/StudyList.tsx +++ b/optuna_dashboard/ts/components/StudyList.tsx @@ -18,7 +18,7 @@ import { TextField, CardActions, } from "@mui/material" -import { Delete, Refresh, Search } from "@mui/icons-material" +import { Delete, Refresh, Search, HourglassTop } from "@mui/icons-material" import SortIcon from "@mui/icons-material/Sort" import HomeIcon from "@mui/icons-material/Home" import AddBoxIcon from "@mui/icons-material/AddBox" @@ -27,7 +27,7 @@ import DriveFileRenameOutlineIcon from "@mui/icons-material/DriveFileRenameOutli import { actionCreator } from "../action" import { DebouncedInputTextField } from "./Debounce" -import { studySummariesState } from "../state" +import { studySummariesLoadingState, studySummariesState } from "../state" import { styled } from "@mui/system" import { AppDrawer } from "./AppDrawer" import { useCreateStudyDialog } from "./CreateStudyDialog" @@ -57,6 +57,7 @@ export const StudyList: FC<{ useDeleteStudyDialog() const [openRenameStudyDialog, renderRenameStudyDialog] = useRenameStudyDialog(studies) + const isLoading = useRecoilValue(studySummariesLoadingState) const navigate = useNavigate() const useQuery = (): URLSearchParams => { @@ -72,7 +73,6 @@ export const StudyList: FC<{ if (sortBy === "desc") { filteredStudies = filteredStudies.reverse() } - useEffect(() => { action.updateStudySummaries() }, []) @@ -126,6 +126,71 @@ export const StudyList: FC<{ const toolbar = + let studyListContent + if (isLoading) { + studyListContent = ( +
+ + + + Loading studies... +
+ ) + } else { + studyListContent = filteredStudies.map((study) => ( + + + + + {study.study_id}. {study.study_name} + + + {study.is_preferential + ? "Preferential Optimization" + : "Direction: " + + study.directions + .map((d) => d.toString().toUpperCase()) + .join(", ")} + + + + + + { + openRenameStudyDialog(study.study_id, study.study_name) + }} + > + + + { + openDeleteStudyDialog(study.study_id) + }} + > + + + + + )) + } + return ( @@ -196,58 +261,7 @@ export const StudyList: FC<{ - {filteredStudies.map((study) => ( - - - - - {study.study_id}. {study.study_name} - - - {study.is_preferential - ? "Preferential Optimization" - : "Direction: " + - study.directions - .map((d) => d.toString().toUpperCase()) - .join(", ")} - - - - - - { - openRenameStudyDialog(study.study_id, study.study_name) - }} - > - - - { - openDeleteStudyDialog(study.study_id) - }} - > - - - - - ))} + {studyListContent} diff --git a/optuna_dashboard/ts/state.ts b/optuna_dashboard/ts/state.ts index 94e8d2d7..4ec7551a 100644 --- a/optuna_dashboard/ts/state.ts +++ b/optuna_dashboard/ts/state.ts @@ -56,6 +56,11 @@ export const artifactIsAvailable = atom({ default: false, }) +export const studySummariesLoadingState = atom({ + key: "studySummariesLoadingState", + default: false, +}) + export const useStudyDetailValue = (studyId: number): StudyDetail | null => { const studyDetails = useRecoilValue(studyDetailsState) return studyDetails[studyId] || null From 5f7302168b1f32cc1769b471f42ed9ff1f45f06c Mon Sep 17 00:00:00 2001 From: nabenabe0928 Date: Mon, 22 Jan 2024 05:28:05 +0100 Subject: [PATCH 28/84] Address the umezawa's comment --- optuna_dashboard/ts/components/DataGrid.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index 7fe5761f..22693a5b 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -228,7 +228,7 @@ function DataGrid(props: { onPageChange={handleChangePage} onRowsPerPageChange={handleChangeRowsPerPage} /> - {maxPageNumber > 4 ? ( + {maxPageNumber > 2 ? ( setPage(page)} maxPageNumber={maxPageNumber} From 4c0f5e5347e99a6aea244e841c88d8d1fbe1a042 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Mon, 22 Jan 2024 16:13:05 +0900 Subject: [PATCH 29/84] Implement useQuery in queryUtil.ts --- optuna_dashboard/ts/queryUtil.ts | 7 +++++++ 1 file changed, 7 insertions(+) create mode 100644 optuna_dashboard/ts/queryUtil.ts diff --git a/optuna_dashboard/ts/queryUtil.ts b/optuna_dashboard/ts/queryUtil.ts new file mode 100644 index 00000000..e4737c0b --- /dev/null +++ b/optuna_dashboard/ts/queryUtil.ts @@ -0,0 +1,7 @@ +import { useLocation } from "react-router-dom" +import { useMemo } from "react" + +export const useQuery = (): URLSearchParams => { + const { search } = useLocation() + return useMemo(() => new URLSearchParams(search), [search]) +} From fb4939573cbc8d8159727dfab24c321511ee701c Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Mon, 22 Jan 2024 16:17:17 +0900 Subject: [PATCH 30/84] Replace existing definitions of useQuery --- optuna_dashboard/ts/components/CompareStudies.tsx | 8 ++------ optuna_dashboard/ts/components/StudyList.tsx | 9 +++------ optuna_dashboard/ts/components/TrialList.tsx | 9 ++------- 3 files changed, 7 insertions(+), 19 deletions(-) diff --git a/optuna_dashboard/ts/components/CompareStudies.tsx b/optuna_dashboard/ts/components/CompareStudies.tsx index e380485c..77013b4b 100644 --- a/optuna_dashboard/ts/components/CompareStudies.tsx +++ b/optuna_dashboard/ts/components/CompareStudies.tsx @@ -29,12 +29,8 @@ import { studySummariesState, studyDetailsState } from "../state" import { AppDrawer } from "./AppDrawer" import { GraphEdf } from "./GraphEdf" import { GraphHistory } from "./GraphHistory" -import { useNavigate, useLocation } from "react-router-dom" - -const useQuery = (): URLSearchParams => { - const { search } = useLocation() - return useMemo(() => new URLSearchParams(search), [search]) -} +import { useNavigate } from "react-router-dom" +import { useQuery } from "../queryUtil" const useQueriedStudies = ( studies: StudySummary[], diff --git a/optuna_dashboard/ts/components/StudyList.tsx b/optuna_dashboard/ts/components/StudyList.tsx index 14eaa68b..844f4170 100644 --- a/optuna_dashboard/ts/components/StudyList.tsx +++ b/optuna_dashboard/ts/components/StudyList.tsx @@ -1,5 +1,5 @@ -import React, { FC, useEffect, useMemo, useState } from "react" -import { useNavigate, useLocation } from "react-router-dom" +import React, { FC, useEffect, useState } from "react" +import { useNavigate } from "react-router-dom" import { useRecoilValue } from "recoil" import { Link } from "react-router-dom" import { @@ -33,6 +33,7 @@ import { AppDrawer } from "./AppDrawer" import { useCreateStudyDialog } from "./CreateStudyDialog" import { useDeleteStudyDialog } from "./DeleteStudyDialog" import { useRenameStudyDialog } from "./RenameStudyDialog" +import { useQuery } from "../queryUtil" export const StudyList: FC<{ toggleColorMode: () => void @@ -59,10 +60,6 @@ export const StudyList: FC<{ useRenameStudyDialog(studies) const navigate = useNavigate() - const useQuery = (): URLSearchParams => { - const { search } = useLocation() - return useMemo(() => new URLSearchParams(search), [search]) - } const query = useQuery() const initialSortBy = query.get("studies_order_by") === "asc" ? "asc" : "desc" const [sortBy, setSortBy] = useState<"asc" | "desc">(initialSortBy) diff --git a/optuna_dashboard/ts/components/TrialList.tsx b/optuna_dashboard/ts/components/TrialList.tsx index cfde6536..b1856f63 100644 --- a/optuna_dashboard/ts/components/TrialList.tsx +++ b/optuna_dashboard/ts/components/TrialList.tsx @@ -21,13 +21,14 @@ import CheckBoxIcon from "@mui/icons-material/CheckBox" import StopCircleIcon from "@mui/icons-material/StopCircle" import { TrialNote } from "./Note" -import { useNavigate, useLocation } from "react-router-dom" +import { useNavigate } from "react-router-dom" import ListItemIcon from "@mui/material/ListItemIcon" import { useRecoilValue } from "recoil" import { artifactIsAvailable } from "../state" import { actionCreator } from "../action" import { TrialFormWidgets } from "./TrialFormWidgets" import { TrialArtifactCards } from "./TrialArtifactCards" +import { useQuery } from "../queryUtil" const states: TrialState[] = [ "Complete", @@ -61,12 +62,6 @@ const getChipColor = (state: TrialState): Color => { return "default" } -const useQuery = (): URLSearchParams => { - const { search } = useLocation() - - return useMemo(() => new URLSearchParams(search), [search]) -} - const useExcludedStates = (query: URLSearchParams): TrialState[] => { return useMemo(() => { const exclude = query.get("exclude") From 9b2e8943edad5aab66653cc7e83b924a4f0abc60 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Mon, 22 Jan 2024 18:14:28 +0900 Subject: [PATCH 31/84] Rename queryUtil to urlQuery --- optuna_dashboard/ts/components/CompareStudies.tsx | 2 +- optuna_dashboard/ts/components/StudyList.tsx | 2 +- optuna_dashboard/ts/components/TrialList.tsx | 2 +- optuna_dashboard/ts/{queryUtil.ts => urlQuery.ts} | 0 4 files changed, 3 insertions(+), 3 deletions(-) rename optuna_dashboard/ts/{queryUtil.ts => urlQuery.ts} (100%) diff --git a/optuna_dashboard/ts/components/CompareStudies.tsx b/optuna_dashboard/ts/components/CompareStudies.tsx index 77013b4b..5ae54aea 100644 --- a/optuna_dashboard/ts/components/CompareStudies.tsx +++ b/optuna_dashboard/ts/components/CompareStudies.tsx @@ -30,7 +30,7 @@ import { AppDrawer } from "./AppDrawer" import { GraphEdf } from "./GraphEdf" import { GraphHistory } from "./GraphHistory" import { useNavigate } from "react-router-dom" -import { useQuery } from "../queryUtil" +import { useQuery } from "../urlQuery" const useQueriedStudies = ( studies: StudySummary[], diff --git a/optuna_dashboard/ts/components/StudyList.tsx b/optuna_dashboard/ts/components/StudyList.tsx index 844f4170..c952929c 100644 --- a/optuna_dashboard/ts/components/StudyList.tsx +++ b/optuna_dashboard/ts/components/StudyList.tsx @@ -33,7 +33,7 @@ import { AppDrawer } from "./AppDrawer" import { useCreateStudyDialog } from "./CreateStudyDialog" import { useDeleteStudyDialog } from "./DeleteStudyDialog" import { useRenameStudyDialog } from "./RenameStudyDialog" -import { useQuery } from "../queryUtil" +import { useQuery } from "../urlQuery" export const StudyList: FC<{ toggleColorMode: () => void diff --git a/optuna_dashboard/ts/components/TrialList.tsx b/optuna_dashboard/ts/components/TrialList.tsx index b1856f63..22b7b1ff 100644 --- a/optuna_dashboard/ts/components/TrialList.tsx +++ b/optuna_dashboard/ts/components/TrialList.tsx @@ -28,7 +28,7 @@ import { artifactIsAvailable } from "../state" import { actionCreator } from "../action" import { TrialFormWidgets } from "./TrialFormWidgets" import { TrialArtifactCards } from "./TrialArtifactCards" -import { useQuery } from "../queryUtil" +import { useQuery } from "../urlQuery" const states: TrialState[] = [ "Complete", diff --git a/optuna_dashboard/ts/queryUtil.ts b/optuna_dashboard/ts/urlQuery.ts similarity index 100% rename from optuna_dashboard/ts/queryUtil.ts rename to optuna_dashboard/ts/urlQuery.ts From a18147e1fc0a20e909135cdad13b42bc30f00f46 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Mon, 22 Jan 2024 18:36:33 +0900 Subject: [PATCH 32/84] Add contour_plot api --- optuna_dashboard/_app.py | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/optuna_dashboard/_app.py b/optuna_dashboard/_app.py index ead27188..8f661e0a 100644 --- a/optuna_dashboard/_app.py +++ b/optuna_dashboard/_app.py @@ -261,6 +261,15 @@ def create_app( response.status = 400 # Bad request return {"reason": str(e)} + @app.get("/api/studies//contour_plot") + @json_api_view + def get_contour_plot(study_id: int) -> dict[str, Any]: + study = optuna.load_study( + study_name=storage.get_study_name_from_id(study_id), storage=storage + ) + fig = optuna.visualization.plot_contour(study) + return fig.to_json() + @app.put("/api/studies//note") @json_api_view def save_study_note(study_id: int) -> dict[str, Any]: From 55b62216b42fe7318d1b8b8edde21d71a895a936 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Mon, 22 Jan 2024 18:43:06 +0900 Subject: [PATCH 33/84] Add ContourBackend component --- .../ts/components/GraphContour.tsx | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index b7895ddf..83808b19 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -15,11 +15,41 @@ import blue from "@mui/material/colors/blue" import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { useMergedUnionSearchSpace } from "../searchSpace" import { getAxisInfo } from "../graphUtil" +import { useQuery } from "../urlQuery" const plotDomId = "graph-contour" export const Contour: FC<{ study: StudyDetail | null +}> = ({ study = null }) => { + const query = useQuery() + if (query.get("backend") === "true") { + return + } else { + return + } +} + +const ContourBackend: FC<{ + studyId: number | undefined +}> = ({ studyId }) => { + // TODO(knshnb) handle null and undefined + useEffect(() => { + fetch(`/api/studies/${studyId}/contour_plot`, {mode: "cors"}) + .then((response) => response.json()) + .then((figure) => { + plotly.react(plotDomId, figure.data, figure.layout) + }).catch((err) => { + console.error(err); + }) + }, [studyId]) + return ( + + ) +} + +const ContourFrontend: FC<{ + study: StudyDetail | null }> = ({ study = null }) => { const theme = useTheme() const [objectiveId, setObjectiveId] = useState(0) From 81a2a2066eb9a76e8c2e8fdc20c4612ba0e111c5 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Mon, 8 Jan 2024 14:02:21 +0900 Subject: [PATCH 34/84] Change to optuna>=3.1.0 --- .github/workflows/e2e-dashboard-tests.yml | 7 +----- .github/workflows/python-coverage.yml | 2 +- .github/workflows/python-tests.yml | 27 +++++------------------ pyproject.toml | 2 +- requirements.txt | 2 +- 5 files changed, 10 insertions(+), 30 deletions(-) diff --git a/.github/workflows/e2e-dashboard-tests.yml b/.github/workflows/e2e-dashboard-tests.yml index a0396976..7e5b18c8 100644 --- a/.github/workflows/e2e-dashboard-tests.yml +++ b/.github/workflows/e2e-dashboard-tests.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-20.04 strategy: matrix: - optuna-version: ['optuna==2.10.0', 'git+https://github.com/optuna/optuna.git'] + optuna-version: ['optuna==3.1.0', 'git+https://github.com/optuna/optuna.git'] steps: - uses: actions/checkout@v2 @@ -48,9 +48,4 @@ jobs: - name: Run e2e tests run: | - if [ "${{ matrix.optuna-version }}" = "optuna==2.10.0" ]; then - ignore_option="--ignore e2e_tests/test_dashboard/test_usecases/test_preferential_optimization.py" - else - ignore_option="" - fi pytest e2e_tests/test_dashboard $ignore_option diff --git a/.github/workflows/python-coverage.yml b/.github/workflows/python-coverage.yml index c96f506b..cd24264d 100644 --- a/.github/workflows/python-coverage.yml +++ b/.github/workflows/python-coverage.yml @@ -28,7 +28,7 @@ jobs: python -m pip install --progress-bar off --upgrade pip setuptools pip install --progress-bar off .[optional] pip install --progress-bar off .[test] - pip install --progress-bar off "optuna>=3.0.0" + pip install --progress-bar off "optuna>=3.1.0" pip install --progress-bar off . echo 'import coverage; coverage.process_startup()' > sitecustomize.py - name: Tests diff --git a/.github/workflows/python-tests.yml b/.github/workflows/python-tests.yml index 60dd6ea0..da6f4c84 100644 --- a/.github/workflows/python-tests.yml +++ b/.github/workflows/python-tests.yml @@ -21,7 +21,7 @@ jobs: # python_tests requires optuna>=3.0.0 since it imports FloatDistribution run: | python -m pip install --progress-bar off --upgrade pip setuptools - pip install --progress-bar off "optuna>=3.0.0" + pip install --progress-bar off "optuna>=3.1.0" pip install --progress-bar off . pip install --progress-bar off flake8 black isort mypy mypy-boto3-s3 - run: flake8 . --show-source @@ -34,7 +34,8 @@ jobs: matrix: # Add Python '3.11' after released Optuna v3.1 # since Optuna v3.0.4 depends on scipy<1.9.0 and >=1.7.0 - python-version: ['3.7', '3.8', '3.9', '3.10'] + python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] + optuna-version: ['optuna==3.1.0', 'git+https://github.com/optuna/optuna.git'] steps: - uses: actions/checkout@v2 - name: Setup Python${{ matrix.python-version }} @@ -42,29 +43,13 @@ jobs: with: python-version: ${{ matrix.python-version }} architecture: x64 - - name: Install dependencies - # python_tests requires optuna>=3.0.0 since it imports FloatDistribution + - name: Setup Optuna ${{ matrix.optuna-version }} run: | python -m pip install --progress-bar off --upgrade pip setuptools - pip install --progress-bar off .[optional] - pip install --progress-bar off .[test] - pip install --progress-bar off "optuna>=3.0.0" - pip install --progress-bar off . - - run: pytest python_tests - test-with-optuna-master: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v2 - - name: Setup Python - uses: actions/setup-python@v4 - with: - python-version: '3.11' - architecture: x64 + python -m pip install --progress-bar off --upgrade ${{ matrix.optuna-version }} - name: Install dependencies run: | - python -m pip install --progress-bar off --upgrade pip setuptools pip install --progress-bar off .[optional] pip install --progress-bar off .[test] pip install --progress-bar off . - python -m pip install --progress-bar off --upgrade git+https://github.com/optuna/optuna.git - - run: pytest python_tests + - run: pytest python_tests \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index 1f125735..d963bfc8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ classifiers = [ ] dependencies = [ "bottle", - "optuna>=2.4.0", + "optuna>=3.1.0", "packaging", "scikit-learn", ] diff --git a/requirements.txt b/requirements.txt index 59a9c586..c2ad9d23 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,5 +1,5 @@ # project dependency -optuna>=2.4 +optuna>=3.1 bottle scikit-learn streamlit From 8a1fe7defa382b3b73303ce2b1f750c94176d84f Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Wed, 10 Jan 2024 21:08:31 +0900 Subject: [PATCH 35/84] Fix optuna version --- .github/workflows/e2e-dashboard-tests.yml | 2 +- .github/workflows/python-tests.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/e2e-dashboard-tests.yml b/.github/workflows/e2e-dashboard-tests.yml index 7e5b18c8..051e6300 100644 --- a/.github/workflows/e2e-dashboard-tests.yml +++ b/.github/workflows/e2e-dashboard-tests.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-20.04 strategy: matrix: - optuna-version: ['optuna==3.1.0', 'git+https://github.com/optuna/optuna.git'] + optuna-version: ['optuna>=3.1.0', 'git+https://github.com/optuna/optuna.git'] steps: - uses: actions/checkout@v2 diff --git a/.github/workflows/python-tests.yml b/.github/workflows/python-tests.yml index da6f4c84..b1a7dbc8 100644 --- a/.github/workflows/python-tests.yml +++ b/.github/workflows/python-tests.yml @@ -35,7 +35,7 @@ jobs: # Add Python '3.11' after released Optuna v3.1 # since Optuna v3.0.4 depends on scipy<1.9.0 and >=1.7.0 python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] - optuna-version: ['optuna==3.1.0', 'git+https://github.com/optuna/optuna.git'] + optuna-version: ['optuna>=3.1.0', 'git+https://github.com/optuna/optuna.git'] steps: - uses: actions/checkout@v2 - name: Setup Python${{ matrix.python-version }} From db6dcab81ba011f6b9fe683337d669ea1cf049d3 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Mon, 22 Jan 2024 22:07:05 +0900 Subject: [PATCH 36/84] Follow review comments Skip artifact tests Fix error Fix error Fix error Fix error Fix error --- .github/workflows/e2e-dashboard-tests.yml | 4 +- .github/workflows/python-tests.yml | 47 ++++++++++++++++++++--- 2 files changed, 44 insertions(+), 7 deletions(-) diff --git a/.github/workflows/e2e-dashboard-tests.yml b/.github/workflows/e2e-dashboard-tests.yml index 051e6300..e12b9e3b 100644 --- a/.github/workflows/e2e-dashboard-tests.yml +++ b/.github/workflows/e2e-dashboard-tests.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-20.04 strategy: matrix: - optuna-version: ['optuna>=3.1.0', 'git+https://github.com/optuna/optuna.git'] + optuna-version: ['optuna==3.1.0', 'git+https://github.com/optuna/optuna.git'] steps: - uses: actions/checkout@v2 @@ -48,4 +48,4 @@ jobs: - name: Run e2e tests run: | - pytest e2e_tests/test_dashboard $ignore_option + pytest e2e_tests/test_dashboard diff --git a/.github/workflows/python-tests.yml b/.github/workflows/python-tests.yml index b1a7dbc8..a5f69159 100644 --- a/.github/workflows/python-tests.yml +++ b/.github/workflows/python-tests.yml @@ -18,7 +18,6 @@ jobs: python-version: '3.10' architecture: x64 - name: Install dependencies - # python_tests requires optuna>=3.0.0 since it imports FloatDistribution run: | python -m pip install --progress-bar off --upgrade pip setuptools pip install --progress-bar off "optuna>=3.1.0" @@ -32,10 +31,8 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - # Add Python '3.11' after released Optuna v3.1 - # since Optuna v3.0.4 depends on scipy<1.9.0 and >=1.7.0 python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] - optuna-version: ['optuna>=3.1.0', 'git+https://github.com/optuna/optuna.git'] + optuna-version: ['optuna>=3.1.0'] steps: - uses: actions/checkout@v2 - name: Setup Python${{ matrix.python-version }} @@ -52,4 +49,44 @@ jobs: pip install --progress-bar off .[optional] pip install --progress-bar off .[test] pip install --progress-bar off . - - run: pytest python_tests \ No newline at end of file + - name: Run python unit tests + run: | + pytest python_tests + test-with-optuna-master: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - name: Setup Python + uses: actions/setup-python@v4 + with: + python-version: '3.11' + architecture: x64 + - name: Install dependencies + run: | + python -m pip install --progress-bar off --upgrade pip setuptools + pip install --progress-bar off .[optional] + pip install --progress-bar off .[test] + pip install --progress-bar off . + python -m pip install --progress-bar off --upgrade git+https://github.com/optuna/optuna.git + - name: Run python unit tests + run: | + pytest python_tests + test-with-optuna-oldest: # Ideally, optuna==3.1.0, but lots of tests are broken. + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - name: Setup Python + uses: actions/setup-python@v4 + with: + python-version: '3.11' + architecture: x64 + - name: Install dependencies + run: | + python -m pip install --progress-bar off --upgrade pip setuptools + pip install --progress-bar off .[optional] + pip install --progress-bar off .[test] + pip install --progress-bar off . + python -m pip install --progress-bar off --upgrade optuna==3.4.0 + - name: Run python unit tests + run: | + pytest python_tests From 1a10f1bc3eb3ae27cf8cb810344fb1c9a88d76d6 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Tue, 23 Jan 2024 09:25:04 +0900 Subject: [PATCH 37/84] Stop running test with optuna 3.4.0 --- .github/workflows/python-tests.yml | 19 ------------------- 1 file changed, 19 deletions(-) diff --git a/.github/workflows/python-tests.yml b/.github/workflows/python-tests.yml index a5f69159..2973ab06 100644 --- a/.github/workflows/python-tests.yml +++ b/.github/workflows/python-tests.yml @@ -71,22 +71,3 @@ jobs: - name: Run python unit tests run: | pytest python_tests - test-with-optuna-oldest: # Ideally, optuna==3.1.0, but lots of tests are broken. - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v2 - - name: Setup Python - uses: actions/setup-python@v4 - with: - python-version: '3.11' - architecture: x64 - - name: Install dependencies - run: | - python -m pip install --progress-bar off --upgrade pip setuptools - pip install --progress-bar off .[optional] - pip install --progress-bar off .[test] - pip install --progress-bar off . - python -m pip install --progress-bar off --upgrade optuna==3.4.0 - - name: Run python unit tests - run: | - pytest python_tests From 736d2ee1fe326fe7e3e4e813ee48fcd70c72dd7a Mon Sep 17 00:00:00 2001 From: keisuke umezawa Date: Tue, 23 Jan 2024 09:31:02 +0900 Subject: [PATCH 38/84] Apply suggestions from code review Co-authored-by: c-bata --- .github/workflows/python-coverage.yml | 1 - .github/workflows/python-tests.yml | 1 - 2 files changed, 2 deletions(-) diff --git a/.github/workflows/python-coverage.yml b/.github/workflows/python-coverage.yml index cd24264d..bc5e4fb5 100644 --- a/.github/workflows/python-coverage.yml +++ b/.github/workflows/python-coverage.yml @@ -28,7 +28,6 @@ jobs: python -m pip install --progress-bar off --upgrade pip setuptools pip install --progress-bar off .[optional] pip install --progress-bar off .[test] - pip install --progress-bar off "optuna>=3.1.0" pip install --progress-bar off . echo 'import coverage; coverage.process_startup()' > sitecustomize.py - name: Tests diff --git a/.github/workflows/python-tests.yml b/.github/workflows/python-tests.yml index 2973ab06..8f0ff58c 100644 --- a/.github/workflows/python-tests.yml +++ b/.github/workflows/python-tests.yml @@ -20,7 +20,6 @@ jobs: - name: Install dependencies run: | python -m pip install --progress-bar off --upgrade pip setuptools - pip install --progress-bar off "optuna>=3.1.0" pip install --progress-bar off . pip install --progress-bar off flake8 black isort mypy mypy-boto3-s3 - run: flake8 . --show-source From ac1e1b63bc3a8809918f9583b546de244b101319 Mon Sep 17 00:00:00 2001 From: Yoshihiko Ozaki <30489874+y0z@users.noreply.github.com> Date: Tue, 23 Jan 2024 10:06:24 +0900 Subject: [PATCH 39/84] Update optuna_dashboard/ts/components/StudyList.tsx Co-authored-by: c-bata --- optuna_dashboard/ts/components/StudyList.tsx | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/optuna_dashboard/ts/components/StudyList.tsx b/optuna_dashboard/ts/components/StudyList.tsx index c5fde6df..8a51ea3c 100644 --- a/optuna_dashboard/ts/components/StudyList.tsx +++ b/optuna_dashboard/ts/components/StudyList.tsx @@ -129,12 +129,12 @@ export const StudyList: FC<{ let studyListContent if (isLoading) { studyListContent = ( -
+ Loading studies... -
+ ) } else { studyListContent = filteredStudies.map((study) => ( From 1a9340ce0bdd9f27b24564ac63365a2f1d08ba0a Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Tue, 23 Jan 2024 12:36:58 +0900 Subject: [PATCH 40/84] Update query parameter name --- optuna_dashboard/ts/components/GraphContour.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index 83808b19..7903973c 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -23,7 +23,7 @@ export const Contour: FC<{ study: StudyDetail | null }> = ({ study = null }) => { const query = useQuery() - if (query.get("backend") === "true") { + if (query.get("plotlypy_rendering") === "true") { return } else { return From a652c59061ad83611a1f0514787bab9e0fd13b58 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Tue, 23 Jan 2024 18:46:45 +0900 Subject: [PATCH 41/84] Add plotly figures to recoil state --- optuna_dashboard/ts/action.ts | 27 ++++++++++++++ .../ts/components/GraphContour.tsx | 35 ++++++++++++------- optuna_dashboard/ts/state.ts | 6 ++++ 3 files changed, 56 insertions(+), 12 deletions(-) diff --git a/optuna_dashboard/ts/action.ts b/optuna_dashboard/ts/action.ts index 10fe43bc..64dd8131 100644 --- a/optuna_dashboard/ts/action.ts +++ b/optuna_dashboard/ts/action.ts @@ -1,3 +1,4 @@ +import * as plotly from 'plotly.js'; import { useRecoilState, useSetRecoilState } from "recoil" import { useSnackbar } from "notistack" import { @@ -30,9 +31,18 @@ import { artifactIsAvailable, reloadIntervalState, trialsUpdatingState, + allPlotlyFiguresState, } from "./state" import { getDominatedTrials } from "./dominatedTrials" +type PlotlyFigure = { + data: plotly.Data[], + layout: plotly.Layout, +}; +export type AllPlotlyFigures = { + [studyId: number]: {[plotName: string]: PlotlyFigure}, +} + // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types export const actionCreator = () => { const { enqueueSnackbar } = useSnackbar() @@ -46,6 +56,7 @@ export const actionCreator = () => { const setUploading = useSetRecoilState(isFileUploading) const setTrialsUpdating = useSetRecoilState(trialsUpdatingState) const setArtifactIsAvailable = useSetRecoilState(artifactIsAvailable) + const [allPlotlyFigures, setAllPlotlyFigures] = useRecoilState(allPlotlyFiguresState) const setStudyDetailState = (studyId: number, study: StudyDetail) => { setStudyDetails((prevVal) => { @@ -696,6 +707,21 @@ export const actionCreator = () => { }) console.log(err) }) + } + + const updatePlotlyFigures = (studyId: number) => { + fetch(`/api/studies/${studyId}/contour_plot`, {mode: "cors"}) + .then((response) => response.json()) + .then((figure) => { + const newAllPlotlyFigures = Object.assign({}, allPlotlyFigures) + if (!(studyId in newAllPlotlyFigures)) { + newAllPlotlyFigures[studyId] = {} + } + newAllPlotlyFigures[studyId].contour = {data: figure.data, layout: figure.layout} + setAllPlotlyFigures(newAllPlotlyFigures) + }).catch((err) => { + console.error(err); + }) } return { @@ -721,6 +747,7 @@ export const actionCreator = () => { removePreferentialHistory, restorePreferentialHistory, updateFeedbackComponent, + updatePlotlyFigures, } } diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index 7903973c..c30f98c7 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -16,6 +16,9 @@ import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { useMergedUnionSearchSpace } from "../searchSpace" import { getAxisInfo } from "../graphUtil" import { useQuery } from "../urlQuery" +import { allPlotlyFiguresState } from "../state" +import { useRecoilValue } from "recoil" +import { AllPlotlyFigures, actionCreator } from "../action" const plotDomId = "graph-contour" @@ -24,25 +27,33 @@ export const Contour: FC<{ }> = ({ study = null }) => { const query = useQuery() if (query.get("plotlypy_rendering") === "true") { - return + return } else { return } } const ContourBackend: FC<{ - studyId: number | undefined -}> = ({ studyId }) => { - // TODO(knshnb) handle null and undefined + study: StudyDetail | null +}> = ({ study }) => { + if (study === null) { + return ( + + ) + } + const studyId = study.id + const allPlotlyFigures = useRecoilValue(allPlotlyFiguresState) + const contourPlot = allPlotlyFigures[studyId]?.contour + const action = actionCreator() useEffect(() => { - fetch(`/api/studies/${studyId}/contour_plot`, {mode: "cors"}) - .then((response) => response.json()) - .then((figure) => { - plotly.react(plotDomId, figure.data, figure.layout) - }).catch((err) => { - console.error(err); - }) - }, [studyId]) + action.updatePlotlyFigures(studyId) + }, [study]) + useEffect(() => { + if (contourPlot === undefined) { + return + } + plotly.react(plotDomId, JSON.parse(JSON.stringify(contourPlot.data)), JSON.parse(JSON.stringify(contourPlot.layout))) + }, [contourPlot]) return ( ) diff --git a/optuna_dashboard/ts/state.ts b/optuna_dashboard/ts/state.ts index b1f60654..5b96f54c 100644 --- a/optuna_dashboard/ts/state.ts +++ b/optuna_dashboard/ts/state.ts @@ -1,4 +1,5 @@ import { atom, useRecoilValue } from "recoil" +import { AllPlotlyFigures } from "./action" export const studySummariesState = atom({ key: "studySummaries", @@ -43,6 +44,11 @@ export const artifactIsAvailable = atom({ default: false, }) +export const allPlotlyFiguresState = atom({ + key: "plotlyFigures", + default: {}, +}) + export const useStudyDetailValue = (studyId: number): StudyDetail | null => { const studyDetails = useRecoilValue(studyDetailsState) return studyDetails[studyId] || null From c1e8ea64a6dca50266939ab806d3518135a8bb9d Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 24 Jan 2024 09:09:31 +0900 Subject: [PATCH 42/84] Fix deprecation warning in preferential tutorial --- optuna_dashboard/preferential/samplers/gp.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/optuna_dashboard/preferential/samplers/gp.py b/optuna_dashboard/preferential/samplers/gp.py index 590c5570..24cea9a1 100644 --- a/optuna_dashboard/preferential/samplers/gp.py +++ b/optuna_dashboard/preferential/samplers/gp.py @@ -338,7 +338,8 @@ class PreferentialGPSampler(optuna.samplers.BaseSampler): trial: optuna.trial.FrozenTrial, search_space: dict[str, optuna.distributions.BaseDistribution], ) -> dict[str, Any]: - preferences = get_preferences(study.system_attrs) + study_system_attrs = study._storage.get_study_system_attrs(study._study_id) + preferences = get_preferences(study_system_attrs) if len(preferences) == 0 or len(search_space) == 0: return {} From a9e5cd9b41df97c94197d610a07f3d099ec6e1f2 Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 24 Jan 2024 09:45:52 +0900 Subject: [PATCH 43/84] Add documentation for get_artifact_path --- docs/api.rst | 1 + optuna_dashboard/artifact/_backend.py | 13 ++++++++++++- 2 files changed, 13 insertions(+), 1 deletion(-) diff --git a/docs/api.rst b/docs/api.rst index e26dcfd6..711f4e44 100644 --- a/docs/api.rst +++ b/docs/api.rst @@ -66,6 +66,7 @@ Artifact :nosignatures: optuna_dashboard.artifact.upload_artifact + optuna_dashboard.artifact.get_artifact_path optuna_dashboard.artifact.file_system.FileSystemBackend optuna_dashboard.artifact.boto3.Boto3Backend optuna_dashboard.artifact.backoff.Backoff diff --git a/optuna_dashboard/artifact/_backend.py b/optuna_dashboard/artifact/_backend.py index a76568e2..d7d37c97 100644 --- a/optuna_dashboard/artifact/_backend.py +++ b/optuna_dashboard/artifact/_backend.py @@ -52,7 +52,18 @@ def get_artifact_path( study_or_trial: optuna.Trial | optuna.Study, artifact_id: str, ) -> str: - """Get the URL path for a given artifact ID.""" + """Get the URL path for a given artifact ID. + + Args: + study_or_trial: + A Trial object, or a Study object. + + artifact_id: + An artifact ID. + + Returns: + A URL path to the artifact. + """ if isinstance(study_or_trial, optuna.Study): study_id = study_or_trial._study_id return f"/artifacts/{study_id}/{artifact_id}" From 06a0d5d3bb03e619231229890d0ffe2a133cc62c Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 24 Jan 2024 10:06:40 +0900 Subject: [PATCH 44/84] Remove deprecation warnings --- optuna_dashboard/_serializer.py | 2 +- optuna_dashboard/artifact/_backend.py | 16 +++++++++++----- python_tests/artifact/test_backend.py | 7 +++++-- .../artifact/test_optuna_compatibility.py | 5 ++++- 4 files changed, 21 insertions(+), 9 deletions(-) diff --git a/optuna_dashboard/_serializer.py b/optuna_dashboard/_serializer.py index 7030abec..b280d411 100644 --- a/optuna_dashboard/_serializer.py +++ b/optuna_dashboard/_serializer.py @@ -246,7 +246,7 @@ def serialize_frozen_trial( ], "user_attrs": serialize_attrs(trial.user_attrs), "note": note.get_note_from_system_attrs(study_system_attrs, trial._trial_id), - "artifacts": list_trial_artifacts(study_system_attrs, trial), + "artifacts": list_trial_artifacts(study_system_attrs, trial_system_attrs, trial), "constraints": trial_system_attrs.get(CONSTRAINTS_KEY, []), } diff --git a/optuna_dashboard/artifact/_backend.py b/optuna_dashboard/artifact/_backend.py index a76568e2..941805de 100644 --- a/optuna_dashboard/artifact/_backend.py +++ b/optuna_dashboard/artifact/_backend.py @@ -139,10 +139,12 @@ def register_artifact_route( storage.set_trial_system_attr(trial_id, attr_key, json.dumps(artifact)) response.status = 201 - trial = storage.get_trial(trial_id) # Fetch trial.system_attrs again. + study_system_attrs = storage.get_study_system_attrs(study_id) + trial_system_attrs = storage.get_trial_system_attrs(trial_id) + artifacts = list_trial_artifacts(study_system_attrs, trial_system_attrs, trial) return { "artifact_id": artifact_id, - "artifacts": list_trial_artifacts(storage.get_study_system_attrs(study_id), trial), + "artifacts": artifacts, } @app.post("/api/artifacts/") @@ -322,7 +324,11 @@ def delete_all_artifacts(backend: ArtifactStore, storage: BaseStorage, study_id: study_system_attrs = storage.get_study_system_attrs(study_id) artifact_metas.extend(list_study_artifacts(study_system_attrs)) for trial in storage.get_all_trials(study_id): - trial_artifacts = list_trial_artifacts(study_system_attrs, trial) + trial_system_attrs = getattr(trial, "_system_attrs") + if trial_system_attrs is None: + # This is unreachable line until Optuna v5.0.0 release. + trial_system_attrs = storage.get_trial_system_attrs(trial._trial_id) + trial_artifacts = list_trial_artifacts(study_system_attrs, trial_system_attrs, trial) artifact_metas.extend(trial_artifacts) for meta in artifact_metas: @@ -339,7 +345,7 @@ def list_study_artifacts(study_system_attrs: dict[str, Any]) -> list[ArtifactMet def list_trial_artifacts( - study_system_attrs: dict[str, Any], trial: FrozenTrial + study_system_attrs: dict[str, Any], trial_system_attrs: dict[str, Any], trial: FrozenTrial ) -> list[ArtifactMeta]: # Collect ArtifactMeta from study_system_attrs due to backward compatibility. dashboard_artifact_metas = [ @@ -353,7 +359,7 @@ def list_trial_artifacts( # See https://github.com/optuna/optuna/blob/f827582a8/optuna/artifacts/_upload.py#L16 optuna_artifact_metas = [ json.loads(value) - for key, value in trial.system_attrs.items() + for key, value in trial_system_attrs.items() if key.startswith(ARTIFACTS_ATTR_PREFIX) ] artifact_metas = dashboard_artifact_metas + optuna_artifact_metas diff --git a/python_tests/artifact/test_backend.py b/python_tests/artifact/test_backend.py index 8325343b..90004f11 100644 --- a/python_tests/artifact/test_backend.py +++ b/python_tests/artifact/test_backend.py @@ -84,9 +84,12 @@ def test_delete_all_artifacts(init_storage_with_artifact_meta: MagicMock) -> Non def test_list_trial_artifacts(init_storage_with_artifact_meta: MagicMock) -> None: storage = init_storage_with_artifact_meta - trial = MagicMock(_trial_id=0, system_attrs=storage.get_trial_system_attrs(0)) + trial_system_attrs = storage.get_trial_system_attrs(0) + trial = MagicMock(_trial_id=0, system_attrs={}) - actual = _backend.list_trial_artifacts(storage.get_study_system_attrs(0), trial) + actual = _backend.list_trial_artifacts( + storage.get_study_system_attrs(0), trial_system_attrs, trial + ) assert actual == [ {"artifact_id": "id0", "filename": "foo.txt"}, {"artifact_id": "id1", "filename": "bar.txt"}, diff --git a/python_tests/artifact/test_optuna_compatibility.py b/python_tests/artifact/test_optuna_compatibility.py index 82d36450..1ade64ab 100644 --- a/python_tests/artifact/test_optuna_compatibility.py +++ b/python_tests/artifact/test_optuna_compatibility.py @@ -36,8 +36,11 @@ def test_list_optuna_trial_artifacts() -> None: study.tell(trial, 0.0) study_system_attrs = storage.get_study_system_attrs(study._study_id) + trial_system_attrs = storage.get_trial_system_attrs(trial._trial_id) frozen_trial = storage.get_trial(trial._trial_id) - artifact_meta_list = list_trial_artifacts(study_system_attrs, frozen_trial) + artifact_meta_list = list_trial_artifacts( + study_system_attrs, trial_system_attrs, frozen_trial + ) assert len(artifact_meta_list) == 1 artifact_id = artifact_meta_list[0]["artifact_id"] From db15d9b56d7c270e9b31e53dc82c9aa61c5b70c2 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Wed, 24 Jan 2024 21:58:07 +0900 Subject: [PATCH 45/84] Skip unit test with optuna version --- .github/workflows/python-tests.yml | 19 ++++++++++++++ python_tests/artifact/test_backend.py | 8 +++++- python_tests/preferential/test_samplers.py | 5 +++- python_tests/preferential/test_study.py | 5 ++++ python_tests/test_api.py | 29 ++++++++++++++++++++++ python_tests/test_csv_download.py | 5 ++++ python_tests/test_preferential_history.py | 6 +++++ python_tests/test_serializers.py | 7 ++++++ 8 files changed, 82 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python-tests.yml b/.github/workflows/python-tests.yml index 8f0ff58c..1c294b33 100644 --- a/.github/workflows/python-tests.yml +++ b/.github/workflows/python-tests.yml @@ -70,3 +70,22 @@ jobs: - name: Run python unit tests run: | pytest python_tests + test-with-optuna-oldest: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - name: Setup Python + uses: actions/setup-python@v4 + with: + python-version: '3.11' + architecture: x64 + - name: Install dependencies + run: | + python -m pip install --progress-bar off --upgrade pip setuptools + pip install --progress-bar off .[optional] + pip install --progress-bar off .[test] + pip install --progress-bar off . + python -m pip install --progress-bar off --force-reinstall optuna==3.1.0 + - name: Run python unit tests + run: | + pytest python_tests diff --git a/python_tests/artifact/test_backend.py b/python_tests/artifact/test_backend.py index 90004f11..c9caec1d 100644 --- a/python_tests/artifact/test_backend.py +++ b/python_tests/artifact/test_backend.py @@ -4,6 +4,13 @@ import tempfile from unittest.mock import MagicMock import optuna +from packaging import version +import pytest + + +if version.parse(optuna.__version__) < version.parse("3.3.0"): + pytest.skip("optuna.artiracts module is introduced at v3.3.0", allow_module_level=True) + from optuna.artifacts import FileSystemArtifactStore from optuna.artifacts import upload_artifact from optuna.storages import BaseStorage @@ -12,7 +19,6 @@ from optuna_dashboard.artifact import _backend from optuna_dashboard.artifact import upload_artifact as dashboard_upload_artifact from optuna_dashboard.artifact._backend_to_store import to_artifact_store from optuna_dashboard.artifact.file_system import FileSystemBackend -import pytest from ..wsgi_client import send_request diff --git a/python_tests/preferential/test_samplers.py b/python_tests/preferential/test_samplers.py index 2de8864c..7effe9da 100644 --- a/python_tests/preferential/test_samplers.py +++ b/python_tests/preferential/test_samplers.py @@ -11,6 +11,7 @@ from optuna.distributions import IntDistribution from optuna.samplers import BaseSampler from optuna.trial import TrialState from optuna_dashboard.preferential import create_study +from packaging import version import pytest @@ -27,7 +28,9 @@ parametrize_sampler = pytest.mark.parametrize( pytest.param( PreferentialGPSampler, marks=pytest.mark.skipif( - sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support" + sys.version_info < (3, 8) + or version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="BoTorch dropped Python3.7 support", ), ), ], diff --git a/python_tests/preferential/test_study.py b/python_tests/preferential/test_study.py index 9b4a3f31..5ba8406a 100644 --- a/python_tests/preferential/test_study.py +++ b/python_tests/preferential/test_study.py @@ -8,6 +8,7 @@ from typing import Callable from unittest.mock import patch import uuid +import optuna from optuna import copy_study from optuna import create_trial from optuna import delete_study @@ -17,12 +18,16 @@ from optuna.exceptions import DuplicatedStudyError from optuna.trial import TrialState from optuna_dashboard.preferential import create_study from optuna_dashboard.preferential import load_study +from packaging import version import pytest from ..storage_supplier import parametrize_storages from ..storage_supplier import StorageSupplier +if version.parse(optuna.__version__) < version.parse("3.4.0"): + pytest.skip("Preferential optimization is introduced at v3.4.0", allow_module_level=True) + if sys.version_info < (3, 8): pytest.skip("BoTorch dropped Python3.7 support", allow_module_level=True) diff --git a/python_tests/test_api.py b/python_tests/test_api.py index e7210710..d644635f 100644 --- a/python_tests/test_api.py +++ b/python_tests/test_api.py @@ -17,6 +17,7 @@ from optuna_dashboard._preferential_history import remove_history from optuna_dashboard._preferential_history import report_history from optuna_dashboard._serializer import serialize_preference_history from optuna_dashboard.preferential import create_study +from packaging import version import pytest from .wsgi_client import send_request @@ -110,6 +111,10 @@ class APITestCase(TestCase): self.assertEqual(status, 400) @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") + @pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="Needs optuna.search_space", + ) def test_get_best_trials_of_preferential_study(self) -> None: storage = optuna.storages.InMemoryStorage() study = create_study(n_generate=4, storage=storage) @@ -134,6 +139,10 @@ class APITestCase(TestCase): assert best_trials[0]["number"] == 0 @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") + @pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="Needs optuna.search_space", + ) def test_report_preference(self) -> None: storage = optuna.storages.InMemoryStorage() study = create_study(n_generate=4, storage=storage) @@ -168,6 +177,10 @@ class APITestCase(TestCase): assert worse.number == 1 @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") + @pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="Needs optuna.search_space", + ) def test_report_preference_when_typo_mode(self) -> None: storage = optuna.storages.InMemoryStorage() study = create_study(storage=storage, n_generate=3) @@ -192,6 +205,10 @@ class APITestCase(TestCase): self.assertEqual(status, 400) @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") + @pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="Needs optuna.search_space", + ) def test_change_component(self) -> None: storage = optuna.storages.InMemoryStorage() study = create_study(storage=storage, n_generate=3) @@ -327,6 +344,10 @@ class APITestCase(TestCase): assert note_ver_key(0) not in study.system_attrs @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") + @pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="Needs optuna.search_space", + ) def test_skip_trial(self) -> None: storage = optuna.storages.InMemoryStorage() study = create_study(n_generate=4, storage=storage) @@ -352,6 +373,10 @@ class APITestCase(TestCase): assert best_trials[0].number == 2 @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") + @pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="Needs optuna.search_space", + ) def test_remove_history(self) -> None: storage = optuna.storages.InMemoryStorage() study = create_study(storage=storage, n_generate=3) @@ -386,6 +411,10 @@ class APITestCase(TestCase): assert len(study.get_preferences()) == 0 @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") + @pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), + reason="Needs optuna.search_space", + ) def test_restore_history(self) -> None: storage = optuna.storages.InMemoryStorage() study = create_study(storage=storage, n_generate=3) diff --git a/python_tests/test_csv_download.py b/python_tests/test_csv_download.py index 019f18ba..dc2d3ee6 100644 --- a/python_tests/test_csv_download.py +++ b/python_tests/test_csv_download.py @@ -5,11 +5,16 @@ from typing import Any import optuna from optuna.trial import TrialState from optuna_dashboard._app import create_app +from packaging import version import pytest from .wsgi_client import send_request +if version.parse(optuna.__version__) < version.parse("3.2.0"): + pytest.skip("Study.metrics_name is introduced at v3.2.0", allow_module_level=True) + + def _validate_output( storage: optuna.storages.BaseStorage, correct_status: int, diff --git a/python_tests/test_preferential_history.py b/python_tests/test_preferential_history.py index dcae4797..84def0d3 100644 --- a/python_tests/test_preferential_history.py +++ b/python_tests/test_preferential_history.py @@ -5,6 +5,7 @@ import sys from typing import Callable from typing import TYPE_CHECKING +import optuna from optuna.storages import BaseStorage from optuna_dashboard._preferential_history import _SYSTEM_ATTR_PREFIX_HISTORY from optuna_dashboard._preferential_history import NewHistory @@ -14,6 +15,7 @@ from optuna_dashboard._preferential_history import restore_history from optuna_dashboard._serializer import serialize_preference_history from optuna_dashboard.preferential import create_study from optuna_dashboard.preferential._system_attrs import _SYSTEM_ATTR_PREFIX_PREFERENCE +from packaging import version import pytest from .storage_supplier import parametrize_storages @@ -24,6 +26,10 @@ if TYPE_CHECKING: from optuna_dashboard._preferential_history import History +if version.parse(optuna.__version__) < version.parse("3.4.0"): + pytest.skip("Preferential optimization is introduced at v3.4.0", allow_module_level=True) + + if sys.version_info < (3, 8): pytest.skip("BoTorch dropped Python3.7 support", allow_module_level=True) diff --git a/python_tests/test_serializers.py b/python_tests/test_serializers.py index d1bdf59b..a991d5d3 100644 --- a/python_tests/test_serializers.py +++ b/python_tests/test_serializers.py @@ -9,6 +9,7 @@ from optuna_dashboard._serializer import serialize_study_detail from optuna_dashboard._serializer import serialize_study_summary from optuna_dashboard._storage import get_study_summaries from optuna_dashboard.preferential import create_study +from packaging import version import pytest @@ -53,6 +54,9 @@ def test_serialize_numpy_floating() -> None: @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") +@pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), reason="Needs optuna.search_space" +) def test_get_study_detail_is_preferential() -> None: storage = optuna.storages.InMemoryStorage() study = create_study(n_generate=4, storage=storage) @@ -80,6 +84,9 @@ def test_get_study_detail_is_not_preferential() -> None: @pytest.mark.skipif(sys.version_info < (3, 8), reason="BoTorch dropped Python3.7 support") +@pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.2.0"), reason="Needs optuna.search_space" +) def test_get_study_summary_is_preferential() -> None: storage = optuna.storages.InMemoryStorage() create_study(n_generate=4, storage=storage) From 1497505b4e4980fc8298f740fcd86d6c1981b303 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Wed, 24 Jan 2024 22:11:20 +0900 Subject: [PATCH 46/84] Check optuna v3.1.0 to latest --- python_tests/artifact/test_backend.py | 8 ++++++++ python_tests/test_csv_download.py | 4 ++-- 2 files changed, 10 insertions(+), 2 deletions(-) diff --git a/python_tests/artifact/test_backend.py b/python_tests/artifact/test_backend.py index c9caec1d..56fdf6f5 100644 --- a/python_tests/artifact/test_backend.py +++ b/python_tests/artifact/test_backend.py @@ -128,6 +128,10 @@ def test_study_artifact_not_found() -> None: assert status == 404 +@pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.4.0"), + reason="upload_artiract needs storage", +) def test_successful_study_artifact_retrieval() -> None: storage = optuna.storages.InMemoryStorage() study = optuna.create_study(storage=storage) @@ -263,6 +267,10 @@ def test_upload_artifact() -> None: assert data == "dummy_content" +@pytest.mark.skipif( + version.parse(optuna.__version__) < version.parse("3.4.0"), + reason="upload_artiract needs storage", +) def test_delete_study_artifact() -> None: storage = optuna.storages.InMemoryStorage() study = optuna.create_study(storage=storage) diff --git a/python_tests/test_csv_download.py b/python_tests/test_csv_download.py index dc2d3ee6..6a9e57cd 100644 --- a/python_tests/test_csv_download.py +++ b/python_tests/test_csv_download.py @@ -11,8 +11,8 @@ import pytest from .wsgi_client import send_request -if version.parse(optuna.__version__) < version.parse("3.2.0"): - pytest.skip("Study.metrics_name is introduced at v3.2.0", allow_module_level=True) +if version.parse(optuna.__version__) < version.parse("3.4.0"): + pytest.skip("Study.metrics_name is introduced at v3.4.0", allow_module_level=True) def _validate_output( From 110cf8d21bfe79245bde718c2e4a98e58c451eb3 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 11:59:03 +0900 Subject: [PATCH 47/84] Apply fmt --- optuna_dashboard/ts/action.ts | 43 +++++++++++-------- .../ts/components/GraphContour.tsx | 18 ++++---- 2 files changed, 34 insertions(+), 27 deletions(-) diff --git a/optuna_dashboard/ts/action.ts b/optuna_dashboard/ts/action.ts index 64dd8131..195a215b 100644 --- a/optuna_dashboard/ts/action.ts +++ b/optuna_dashboard/ts/action.ts @@ -1,4 +1,4 @@ -import * as plotly from 'plotly.js'; +import * as plotly from "plotly.js" import { useRecoilState, useSetRecoilState } from "recoil" import { useSnackbar } from "notistack" import { @@ -36,11 +36,11 @@ import { import { getDominatedTrials } from "./dominatedTrials" type PlotlyFigure = { - data: plotly.Data[], - layout: plotly.Layout, -}; + data: plotly.Data[] + layout: plotly.Layout +} export type AllPlotlyFigures = { - [studyId: number]: {[plotName: string]: PlotlyFigure}, + [studyId: number]: { [plotName: string]: PlotlyFigure } } // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types @@ -56,7 +56,8 @@ export const actionCreator = () => { const setUploading = useSetRecoilState(isFileUploading) const setTrialsUpdating = useSetRecoilState(trialsUpdatingState) const setArtifactIsAvailable = useSetRecoilState(artifactIsAvailable) - const [allPlotlyFigures, setAllPlotlyFigures] = useRecoilState(allPlotlyFiguresState) + const [allPlotlyFigures, setAllPlotlyFigures] = + useRecoilState(allPlotlyFiguresState) const setStudyDetailState = (studyId: number, study: StudyDetail) => { setStudyDetails((prevVal) => { @@ -707,21 +708,25 @@ export const actionCreator = () => { }) console.log(err) }) - } + } const updatePlotlyFigures = (studyId: number) => { - fetch(`/api/studies/${studyId}/contour_plot`, {mode: "cors"}) - .then((response) => response.json()) - .then((figure) => { - const newAllPlotlyFigures = Object.assign({}, allPlotlyFigures) - if (!(studyId in newAllPlotlyFigures)) { - newAllPlotlyFigures[studyId] = {} - } - newAllPlotlyFigures[studyId].contour = {data: figure.data, layout: figure.layout} - setAllPlotlyFigures(newAllPlotlyFigures) - }).catch((err) => { - console.error(err); - }) + fetch(`/api/studies/${studyId}/contour_plot`, { mode: "cors" }) + .then((response) => response.json()) + .then((figure) => { + const newAllPlotlyFigures = Object.assign({}, allPlotlyFigures) + if (!(studyId in newAllPlotlyFigures)) { + newAllPlotlyFigures[studyId] = {} + } + newAllPlotlyFigures[studyId].contour = { + data: figure.data, + layout: figure.layout, + } + setAllPlotlyFigures(newAllPlotlyFigures) + }) + .catch((err) => { + console.error(err) + }) } return { diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index c30f98c7..75c3164f 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -37,12 +37,12 @@ const ContourBackend: FC<{ study: StudyDetail | null }> = ({ study }) => { if (study === null) { - return ( - - ) + return } const studyId = study.id - const allPlotlyFigures = useRecoilValue(allPlotlyFiguresState) + const allPlotlyFigures = useRecoilValue( + allPlotlyFiguresState + ) const contourPlot = allPlotlyFigures[studyId]?.contour const action = actionCreator() useEffect(() => { @@ -52,11 +52,13 @@ const ContourBackend: FC<{ if (contourPlot === undefined) { return } - plotly.react(plotDomId, JSON.parse(JSON.stringify(contourPlot.data)), JSON.parse(JSON.stringify(contourPlot.layout))) + plotly.react( + plotDomId, + JSON.parse(JSON.stringify(contourPlot.data)), + JSON.parse(JSON.stringify(contourPlot.layout)) + ) }, [contourPlot]) - return ( - - ) + return } const ContourFrontend: FC<{ From 68f20e08dea196ad36f9a4fcc76444c4f264037e Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 14:39:26 +0900 Subject: [PATCH 48/84] Revert "Add plotly figures to recoil state" This reverts commit a652c59061ad83611a1f0514787bab9e0fd13b58. --- optuna_dashboard/ts/action.ts | 32 -------------- .../ts/components/GraphContour.tsx | 43 +++++++------------ optuna_dashboard/ts/state.ts | 6 --- 3 files changed, 15 insertions(+), 66 deletions(-) diff --git a/optuna_dashboard/ts/action.ts b/optuna_dashboard/ts/action.ts index 195a215b..10fe43bc 100644 --- a/optuna_dashboard/ts/action.ts +++ b/optuna_dashboard/ts/action.ts @@ -1,4 +1,3 @@ -import * as plotly from "plotly.js" import { useRecoilState, useSetRecoilState } from "recoil" import { useSnackbar } from "notistack" import { @@ -31,18 +30,9 @@ import { artifactIsAvailable, reloadIntervalState, trialsUpdatingState, - allPlotlyFiguresState, } from "./state" import { getDominatedTrials } from "./dominatedTrials" -type PlotlyFigure = { - data: plotly.Data[] - layout: plotly.Layout -} -export type AllPlotlyFigures = { - [studyId: number]: { [plotName: string]: PlotlyFigure } -} - // eslint-disable-next-line @typescript-eslint/explicit-module-boundary-types export const actionCreator = () => { const { enqueueSnackbar } = useSnackbar() @@ -56,8 +46,6 @@ export const actionCreator = () => { const setUploading = useSetRecoilState(isFileUploading) const setTrialsUpdating = useSetRecoilState(trialsUpdatingState) const setArtifactIsAvailable = useSetRecoilState(artifactIsAvailable) - const [allPlotlyFigures, setAllPlotlyFigures] = - useRecoilState(allPlotlyFiguresState) const setStudyDetailState = (studyId: number, study: StudyDetail) => { setStudyDetails((prevVal) => { @@ -710,25 +698,6 @@ export const actionCreator = () => { }) } - const updatePlotlyFigures = (studyId: number) => { - fetch(`/api/studies/${studyId}/contour_plot`, { mode: "cors" }) - .then((response) => response.json()) - .then((figure) => { - const newAllPlotlyFigures = Object.assign({}, allPlotlyFigures) - if (!(studyId in newAllPlotlyFigures)) { - newAllPlotlyFigures[studyId] = {} - } - newAllPlotlyFigures[studyId].contour = { - data: figure.data, - layout: figure.layout, - } - setAllPlotlyFigures(newAllPlotlyFigures) - }) - .catch((err) => { - console.error(err) - }) - } - return { updateAPIMeta, updateStudyDetail, @@ -752,7 +721,6 @@ export const actionCreator = () => { removePreferentialHistory, restorePreferentialHistory, updateFeedbackComponent, - updatePlotlyFigures, } } diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index 75c3164f..7903973c 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -16,9 +16,6 @@ import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { useMergedUnionSearchSpace } from "../searchSpace" import { getAxisInfo } from "../graphUtil" import { useQuery } from "../urlQuery" -import { allPlotlyFiguresState } from "../state" -import { useRecoilValue } from "recoil" -import { AllPlotlyFigures, actionCreator } from "../action" const plotDomId = "graph-contour" @@ -27,38 +24,28 @@ export const Contour: FC<{ }> = ({ study = null }) => { const query = useQuery() if (query.get("plotlypy_rendering") === "true") { - return + return } else { return } } const ContourBackend: FC<{ - study: StudyDetail | null -}> = ({ study }) => { - if (study === null) { - return - } - const studyId = study.id - const allPlotlyFigures = useRecoilValue( - allPlotlyFiguresState + studyId: number | undefined +}> = ({ studyId }) => { + // TODO(knshnb) handle null and undefined + useEffect(() => { + fetch(`/api/studies/${studyId}/contour_plot`, {mode: "cors"}) + .then((response) => response.json()) + .then((figure) => { + plotly.react(plotDomId, figure.data, figure.layout) + }).catch((err) => { + console.error(err); + }) + }, [studyId]) + return ( + ) - const contourPlot = allPlotlyFigures[studyId]?.contour - const action = actionCreator() - useEffect(() => { - action.updatePlotlyFigures(studyId) - }, [study]) - useEffect(() => { - if (contourPlot === undefined) { - return - } - plotly.react( - plotDomId, - JSON.parse(JSON.stringify(contourPlot.data)), - JSON.parse(JSON.stringify(contourPlot.layout)) - ) - }, [contourPlot]) - return } const ContourFrontend: FC<{ diff --git a/optuna_dashboard/ts/state.ts b/optuna_dashboard/ts/state.ts index 5b96f54c..b1f60654 100644 --- a/optuna_dashboard/ts/state.ts +++ b/optuna_dashboard/ts/state.ts @@ -1,5 +1,4 @@ import { atom, useRecoilValue } from "recoil" -import { AllPlotlyFigures } from "./action" export const studySummariesState = atom({ key: "studySummaries", @@ -44,11 +43,6 @@ export const artifactIsAvailable = atom({ default: false, }) -export const allPlotlyFiguresState = atom({ - key: "plotlyFigures", - default: {}, -}) - export const useStudyDetailValue = (studyId: number): StudyDetail | null => { const studyDetails = useRecoilValue(studyDetailsState) return studyDetails[studyId] || null From 854e73642db1b9611bda1ac20fd1a3eb44fb22a3 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 14:39:57 +0900 Subject: [PATCH 49/84] Apply fmt --- .../ts/components/GraphContour.tsx | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index 7903973c..89017555 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -35,17 +35,16 @@ const ContourBackend: FC<{ }> = ({ studyId }) => { // TODO(knshnb) handle null and undefined useEffect(() => { - fetch(`/api/studies/${studyId}/contour_plot`, {mode: "cors"}) - .then((response) => response.json()) - .then((figure) => { - plotly.react(plotDomId, figure.data, figure.layout) - }).catch((err) => { - console.error(err); - }) + fetch(`/api/studies/${studyId}/contour_plot`, { mode: "cors" }) + .then((response) => response.json()) + .then((figure) => { + plotly.react(plotDomId, figure.data, figure.layout) + }) + .catch((err) => { + console.error(err) + }) }, [studyId]) - return ( - - ) + return } const ContourFrontend: FC<{ From 4147b01c5633f7ea8bfac245931a4c3fe74c3977 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 15:12:44 +0900 Subject: [PATCH 50/84] Refactor API design and implement APIClient --- optuna_dashboard/_app.py | 10 +++++++--- optuna_dashboard/ts/apiClient.ts | 14 ++++++++++++++ .../ts/components/GraphContour.tsx | 19 +++++++++++-------- 3 files changed, 32 insertions(+), 11 deletions(-) diff --git a/optuna_dashboard/_app.py b/optuna_dashboard/_app.py index 8f661e0a..00a1b22b 100644 --- a/optuna_dashboard/_app.py +++ b/optuna_dashboard/_app.py @@ -261,13 +261,17 @@ def create_app( response.status = 400 # Bad request return {"reason": str(e)} - @app.get("/api/studies//contour_plot") + @app.get("/api/studies//plot/") @json_api_view - def get_contour_plot(study_id: int) -> dict[str, Any]: + def get_plot(study_id: int, plot_type: str) -> dict[str, Any]: study = optuna.load_study( study_name=storage.get_study_name_from_id(study_id), storage=storage ) - fig = optuna.visualization.plot_contour(study) + if plot_type == "contour": + fig = optuna.visualization.plot_contour(study) + else: + response.status = 404 # Not found + return {"reason": f"plot_type={plot_type} is not supported."} return fig.to_json() @app.put("/api/studies//note") diff --git a/optuna_dashboard/ts/apiClient.ts b/optuna_dashboard/ts/apiClient.ts index f42d20de..d50cd938 100644 --- a/optuna_dashboard/ts/apiClient.ts +++ b/optuna_dashboard/ts/apiClient.ts @@ -1,3 +1,4 @@ +import * as plotly from "plotly.js-dist-min" import axios from "axios" const axiosInstance = axios.create({ baseURL: API_ENDPOINT }) @@ -439,3 +440,16 @@ export const reportFeedbackComponentAPI = ( return }) } + +type PlotResponse = { + data: plotly.Data[] + layout: plotly.Layout +} +export const getPlotAPI = ( + studyId: number, + plotName: string +): Promise => { + return axiosInstance + .get(`/api/studies/${studyId}/plot/${plotName}`) + .then((res) => res.data) +} diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index 89017555..b6ab313e 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -16,6 +16,7 @@ import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { useMergedUnionSearchSpace } from "../searchSpace" import { getAxisInfo } from "../graphUtil" import { useQuery } from "../urlQuery" +import { getPlotAPI } from "../apiClient" const plotDomId = "graph-contour" @@ -24,21 +25,23 @@ export const Contour: FC<{ }> = ({ study = null }) => { const query = useQuery() if (query.get("plotlypy_rendering") === "true") { - return + return } else { return } } const ContourBackend: FC<{ - studyId: number | undefined -}> = ({ studyId }) => { - // TODO(knshnb) handle null and undefined + study: StudyDetail | null +}> = ({ study = null }) => { + const studyId = study?.id useEffect(() => { - fetch(`/api/studies/${studyId}/contour_plot`, { mode: "cors" }) - .then((response) => response.json()) - .then((figure) => { - plotly.react(plotDomId, figure.data, figure.layout) + if (studyId === undefined) { + return + } + getPlotAPI(studyId, "contour") + .then(({ data, layout }) => { + plotly.react(plotDomId, data, layout) }) .catch((err) => { console.error(err) From aef91deac28d302f533106e2787e8a694bd15107 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 15:27:34 +0900 Subject: [PATCH 51/84] Use enum for PlotType --- optuna_dashboard/ts/apiClient.ts | 7 +++++-- optuna_dashboard/ts/components/GraphContour.tsx | 4 ++-- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/optuna_dashboard/ts/apiClient.ts b/optuna_dashboard/ts/apiClient.ts index d50cd938..d364b676 100644 --- a/optuna_dashboard/ts/apiClient.ts +++ b/optuna_dashboard/ts/apiClient.ts @@ -445,11 +445,14 @@ type PlotResponse = { data: plotly.Data[] layout: plotly.Layout } +export enum PlotType { + Contour = "contour", +} export const getPlotAPI = ( studyId: number, - plotName: string + plotType: PlotType ): Promise => { return axiosInstance - .get(`/api/studies/${studyId}/plot/${plotName}`) + .get(`/api/studies/${studyId}/plot/${plotType}`) .then((res) => res.data) } diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index b6ab313e..d7c05d3f 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -16,7 +16,7 @@ import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { useMergedUnionSearchSpace } from "../searchSpace" import { getAxisInfo } from "../graphUtil" import { useQuery } from "../urlQuery" -import { getPlotAPI } from "../apiClient" +import { getPlotAPI, PlotType } from "../apiClient" const plotDomId = "graph-contour" @@ -39,7 +39,7 @@ const ContourBackend: FC<{ if (studyId === undefined) { return } - getPlotAPI(studyId, "contour") + getPlotAPI(studyId, PlotType.Contour) .then(({ data, layout }) => { plotly.react(plotDomId, data, layout) }) From d8eb979277953dd48a6e0e63c8e679ec25bfdb20 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 17:46:10 +0900 Subject: [PATCH 52/84] Add plotly as optional dependency --- pyproject.toml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/pyproject.toml b/pyproject.toml index d963bfc8..92bf8516 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -59,6 +59,10 @@ preferential = [ "botorch>=0.8.1", ] +plotlypy = [ + "plotly", +] + [project.scripts] optuna-dashboard = "optuna_dashboard._cli:main" From b74cdda48fd5853e1d36cfa9ed53e39676ba82ba Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 17:50:02 +0900 Subject: [PATCH 53/84] Fall back to plotly.js when plotly.py is not available --- optuna_dashboard/_app.py | 2 ++ optuna_dashboard/ts/action.ts | 5 +++++ optuna_dashboard/ts/apiClient.ts | 1 + optuna_dashboard/ts/components/GraphContour.tsx | 12 +++++++++++- optuna_dashboard/ts/state.ts | 5 +++++ 5 files changed, 24 insertions(+), 1 deletion(-) diff --git a/optuna_dashboard/_app.py b/optuna_dashboard/_app.py index 00a1b22b..1c9c0119 100644 --- a/optuna_dashboard/_app.py +++ b/optuna_dashboard/_app.py @@ -2,6 +2,7 @@ from __future__ import annotations import csv import functools +import importlib import io from itertools import chain import logging @@ -95,6 +96,7 @@ def create_app( def api_meta() -> dict[str, Any]: return { "artifact_is_available": artifact_store is not None, + "plotlypy_is_available": importlib.util.find_spec("plotly") is not None, } @app.get("/api/studies") diff --git a/optuna_dashboard/ts/action.ts b/optuna_dashboard/ts/action.ts index 1503a527..0c448c2e 100644 --- a/optuna_dashboard/ts/action.ts +++ b/optuna_dashboard/ts/action.ts @@ -28,6 +28,7 @@ import { paramImportanceState, isFileUploading, artifactIsAvailable, + plotlypyIsAvailableState, reloadIntervalState, trialsUpdatingState, studySummariesLoadingState, @@ -47,6 +48,9 @@ export const actionCreator = () => { const setUploading = useSetRecoilState(isFileUploading) const setTrialsUpdating = useSetRecoilState(trialsUpdatingState) const setArtifactIsAvailable = useSetRecoilState(artifactIsAvailable) + const setPlotlypyIsAvailable = useSetRecoilState( + plotlypyIsAvailableState + ) const setStudySummariesLoading = useSetRecoilState( studySummariesLoadingState ) @@ -215,6 +219,7 @@ export const actionCreator = () => { const updateAPIMeta = () => { getMetaInfoAPI().then((r) => { setArtifactIsAvailable(r.artifact_is_available) + setPlotlypyIsAvailable(r.plotlypy_is_available) }) } diff --git a/optuna_dashboard/ts/apiClient.ts b/optuna_dashboard/ts/apiClient.ts index d364b676..3798f602 100644 --- a/optuna_dashboard/ts/apiClient.ts +++ b/optuna_dashboard/ts/apiClient.ts @@ -5,6 +5,7 @@ const axiosInstance = axios.create({ baseURL: API_ENDPOINT }) type APIMeta = { artifact_is_available: boolean + plotlypy_is_available: boolean } export const getMetaInfoAPI = (): Promise => { diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index d7c05d3f..2c660a89 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -17,6 +17,8 @@ import { useMergedUnionSearchSpace } from "../searchSpace" import { getAxisInfo } from "../graphUtil" import { useQuery } from "../urlQuery" import { getPlotAPI, PlotType } from "../apiClient" +import { useRecoilValue } from "recoil" +import { plotlypyIsAvailableState } from "../state" const plotDomId = "graph-contour" @@ -24,8 +26,16 @@ export const Contour: FC<{ study: StudyDetail | null }> = ({ study = null }) => { const query = useQuery() + const plotlypyIsAvailable = useRecoilValue(plotlypyIsAvailableState) if (query.get("plotlypy_rendering") === "true") { - return + if (plotlypyIsAvailable) { + return + } else { + console.warn( + "Use frontend rendering because plotlypy is specified but not available." + ) + return + } } else { return } diff --git a/optuna_dashboard/ts/state.ts b/optuna_dashboard/ts/state.ts index 384c9eb5..49307401 100644 --- a/optuna_dashboard/ts/state.ts +++ b/optuna_dashboard/ts/state.ts @@ -43,6 +43,11 @@ export const artifactIsAvailable = atom({ default: false, }) +export const plotlypyIsAvailableState = atom({ + key: "plotlypyIsAvailable", + default: true, +}) + export const studySummariesLoadingState = atom({ key: "studySummariesLoadingState", default: false, From 0c8467b3ba258ea3a124d910ef99180fa4eef889 Mon Sep 17 00:00:00 2001 From: c-bata Date: Fri, 26 Jan 2024 18:40:17 +0900 Subject: [PATCH 54/84] Update npm dependencies --- package-lock.json | 16287 +++++++++++++++++++++++--------------------- package.json | 88 +- 2 files changed, 8390 insertions(+), 7985 deletions(-) diff --git a/package-lock.json b/package-lock.json index 1d9a286e..da77ac07 100644 --- a/package-lock.json +++ b/package-lock.json @@ -9,57 +9,57 @@ "version": "0.0.1", "license": "MIT", "dependencies": { - "@emotion/react": "^11.10.8", - "@emotion/styled": "^11.10.8", - "@mui/icons-material": "^5.11.6", - "@mui/lab": "^5.0.0-alpha.128", - "@mui/material": "^5.12.1", - "@react-three/drei": "^9.80.0", - "@react-three/fiber": "^8.13.6", - "@types/three": "^0.154.0", - "axios": "^1.6.0", - "elkjs": "^0.8.2", + "@emotion/react": "^11.11.3", + "@emotion/styled": "^11.11.0", + "@mui/icons-material": "^5.15.6", + "@mui/lab": 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"@mui/lab": "^5.0.0-alpha.128", - "@mui/material": "^5.12.1", - "@react-three/drei": "^9.80.0", - "@react-three/fiber": "^8.13.6", - "@types/three": "^0.154.0", - "axios": "^1.6.0", - "elkjs": "^0.8.2", + "@emotion/react": "^11.11.3", + "@emotion/styled": "^11.11.0", + "@mui/icons-material": "^5.15.6", + "@mui/lab": "^5.0.0-alpha.162", + "@mui/material": "^5.15.6", + "@react-three/drei": "^9.96.4", + "@react-three/fiber": "^8.15.15", + "@types/three": "^0.160.0", + "axios": "^1.6.7", + "elkjs": "^0.9.1", "notistack": "^3.0.1", - "plotly.js-dist-min": "^2.22.0", + "plotly.js-dist-min": "^2.28.0", "react": "^18.2.0", "react-dom": "^18.2.0", - "react-markdown": "^8.0.4", - "react-router-dom": "^6.11.0", + "react-markdown": "^9.0.1", + "react-router-dom": "^6.21.3", "react-syntax-highlighter": "^15.5.0", - "reactflow": "^11.8.3", + "reactflow": "^11.10.3", "recoil": "^0.7.7", - "rehype-mathjax": "^4.0.2", - "rehype-raw": "^6.1.1", - "remark-gfm": "^3.0.1", - "remark-math": "^5.1.1", - "three": "^0.155.0", - "wavesurfer.js": "^7.4.12" + "rehype-mathjax": "^6.0.0", + "rehype-raw": "^7.0.0", + "remark-gfm": "^4.0.0", + "remark-math": "^6.0.0", + "three": "^0.160.1", + "wavesurfer.js": "^7.7.0" }, "devDependencies": { - "@babel/core": "^7.14.3", - "@babel/preset-env": "^7.14.5", - "@testing-library/react": "^13.4.0", - "@types/jest": "^29.2.1", - "@types/plotly.js": "^2.12.11", - "@types/react": "^18.0.26", - "@types/react-dom": "^18.0.10", - "@types/react-syntax-highlighter": "^15.5.5", - "@typescript-eslint/eslint-plugin": "^6.10.0", - "@typescript-eslint/parser": "^6.10.0", - "compression-webpack-plugin": "^10.0.0", - "css-loader": "^6.8.1", - "esbuild-loader": "^2.18.0", - "eslint": "^8.53.0", - "jest": "^29.2.1", - "jest-canvas-mock": "^2.3.1", - "jest-environment-jsdom": "^29.3.1", - "prettier": "^2.5.1", - "style-loader": "^3.3.3", - "ts-jest": "^29.0.3", - "ts-loader": "^9.2.7", - "typescript": "^4.6.2", - "webpack": "^5.76.0", - "webpack-cli": "^4.9.2" + "@babel/core": "^7.23.9", + "@babel/preset-env": "^7.23.9", + "@testing-library/react": "^14.1.2", + "@types/jest": "^29.5.11", + "@types/plotly.js": "^2.12.32", + "@types/react": "^18.2.48", + "@types/react-dom": "^18.2.18", + "@types/react-syntax-highlighter": "^15.5.11", + "@typescript-eslint/eslint-plugin": "^6.19.1", + "@typescript-eslint/parser": "^6.19.1", + "compression-webpack-plugin": "^11.0.0", + "css-loader": "^6.9.1", + "esbuild-loader": "^4.0.3", + "eslint": "^8.56.0", + "jest": "^29.7.0", + "jest-canvas-mock": "^2.5.2", + "jest-environment-jsdom": "^29.7.0", + "prettier": "^3.2.4", + "style-loader": "^3.3.4", + "ts-jest": "^29.1.2", + "ts-loader": "^9.5.1", + "typescript": "^5.3.3", + "webpack": "^5.90.0", + "webpack-cli": "^5.1.4" } } From f58d1ad9d4abdf8a938462a66724fbc5f1d5d8f3 Mon Sep 17 00:00:00 2001 From: c-bata Date: Fri, 26 Jan 2024 18:42:14 +0900 Subject: [PATCH 55/84] Update Dockerfile --- Dockerfile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Dockerfile b/Dockerfile index 271dbf84..a3a1d6f6 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM node:16 AS front-builder +FROM node:20 AS front-builder WORKDIR /usr/src ADD ./package.json /usr/src/package.json @@ -11,7 +11,7 @@ ADD ./optuna_dashboard/ts/ /usr/src/optuna_dashboard/ts RUN mkdir -p /usr/src/optuna_dashboard/public RUN npm run build:prd -FROM python:3.10-buster AS python-builder +FROM python:3.11-buster AS python-builder WORKDIR /usr/src RUN pip install --upgrade pip setuptools @@ -23,9 +23,9 @@ ADD ./optuna_dashboard /usr/src/optuna_dashboard COPY --from=front-builder /usr/src/optuna_dashboard/public/ /usr/src/optuna_dashboard/public/ RUN pip install --progress-bar off . -FROM python:3.10-slim-buster as runner +FROM python:3.11-slim-buster as runner -COPY --from=python-builder /usr/local/lib/python3.10/site-packages /usr/local/lib/python3.10/site-packages +COPY --from=python-builder /usr/local/lib/python3.11/site-packages /usr/local/lib/python3.11/site-packages COPY --from=python-builder /usr/local/bin/optuna-dashboard /usr/local/bin/optuna-dashboard RUN mkdir /app From e8c774645a43cc710276699aeb3682e79f52611f Mon Sep 17 00:00:00 2001 From: c-bata Date: Fri, 26 Jan 2024 18:50:52 +0900 Subject: [PATCH 56/84] Revert prettier version update --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index 4da59e3c..cfed3c3b 100644 --- a/package.json +++ b/package.json @@ -62,7 +62,7 @@ "jest": "^29.7.0", "jest-canvas-mock": "^2.5.2", "jest-environment-jsdom": "^29.7.0", - "prettier": "^3.2.4", + "prettier": "^2.5.1", "style-loader": "^3.3.4", "ts-jest": "^29.1.2", "ts-loader": "^9.5.1", From 763e9828187c237c324e67e18dc77f2e98713bb5 Mon Sep 17 00:00:00 2001 From: c-bata Date: Fri, 26 Jan 2024 18:54:44 +0900 Subject: [PATCH 57/84] Update package-lock.json --- package-lock.json | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/package-lock.json b/package-lock.json index da77ac07..1b432956 100644 --- a/package-lock.json +++ b/package-lock.json @@ -53,7 +53,7 @@ "jest": "^29.7.0", "jest-canvas-mock": "^2.5.2", "jest-environment-jsdom": "^29.7.0", - "prettier": "^3.2.4", + "prettier": "^2.5.1", "style-loader": "^3.3.4", "ts-jest": "^29.1.2", "ts-loader": "^9.5.1", @@ -12831,15 +12831,15 @@ } }, "node_modules/prettier": { - "version": "3.2.4", - "resolved": "https://registry.npmjs.org/prettier/-/prettier-3.2.4.tgz", - "integrity": "sha512-FWu1oLHKCrtpO1ypU6J0SbK2d9Ckwysq6bHj/uaCP26DxrPpppCLQRGVuqAxSTvhF00AcvDRyYrLNW7ocBhFFQ==", + "version": "2.8.8", + "resolved": "https://registry.npmjs.org/prettier/-/prettier-2.8.8.tgz", + "integrity": "sha512-tdN8qQGvNjw4CHbY+XXk0JgCXn9QiF21a55rBe5LJAU+kDyC4WQn4+awm2Xfk2lQMk5fKup9XgzTZtGkjBdP9Q==", "dev": true, "bin": { - "prettier": "bin/prettier.cjs" + "prettier": "bin-prettier.js" }, "engines": { - "node": ">=14" + "node": ">=10.13.0" }, "funding": { "url": "https://github.com/prettier/prettier?sponsor=1" @@ -24734,9 +24734,9 @@ "dev": true }, "prettier": { - "version": "3.2.4", - "resolved": "https://registry.npmjs.org/prettier/-/prettier-3.2.4.tgz", - "integrity": "sha512-FWu1oLHKCrtpO1ypU6J0SbK2d9Ckwysq6bHj/uaCP26DxrPpppCLQRGVuqAxSTvhF00AcvDRyYrLNW7ocBhFFQ==", + "version": "2.8.8", + "resolved": "https://registry.npmjs.org/prettier/-/prettier-2.8.8.tgz", + "integrity": "sha512-tdN8qQGvNjw4CHbY+XXk0JgCXn9QiF21a55rBe5LJAU+kDyC4WQn4+awm2Xfk2lQMk5fKup9XgzTZtGkjBdP9Q==", "dev": true }, "pretty-format": { From 4828089fdff7d52a5f5b0e676442a46310fa359d Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 19:08:19 +0900 Subject: [PATCH 58/84] Split useBackendRender function --- optuna_dashboard/ts/components/GraphContour.tsx | 17 +++-------------- optuna_dashboard/ts/state.ts | 16 ++++++++++++++++ 2 files changed, 19 insertions(+), 14 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index 2c660a89..7f59e718 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -15,27 +15,16 @@ import blue from "@mui/material/colors/blue" import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { useMergedUnionSearchSpace } from "../searchSpace" import { getAxisInfo } from "../graphUtil" -import { useQuery } from "../urlQuery" import { getPlotAPI, PlotType } from "../apiClient" -import { useRecoilValue } from "recoil" -import { plotlypyIsAvailableState } from "../state" +import { useBackendRender } from "../state" const plotDomId = "graph-contour" export const Contour: FC<{ study: StudyDetail | null }> = ({ study = null }) => { - const query = useQuery() - const plotlypyIsAvailable = useRecoilValue(plotlypyIsAvailableState) - if (query.get("plotlypy_rendering") === "true") { - if (plotlypyIsAvailable) { - return - } else { - console.warn( - "Use frontend rendering because plotlypy is specified but not available." - ) - return - } + if (useBackendRender()) { + return } else { return } diff --git a/optuna_dashboard/ts/state.ts b/optuna_dashboard/ts/state.ts index 49307401..20f75c2d 100644 --- a/optuna_dashboard/ts/state.ts +++ b/optuna_dashboard/ts/state.ts @@ -1,4 +1,5 @@ import { atom, useRecoilValue } from "recoil" +import { useQuery } from "./urlQuery" export const studySummariesState = atom({ key: "studySummaries", @@ -104,3 +105,18 @@ export const useArtifacts = (studyId: number, trialId: number): Artifact[] => { } return trial.artifacts } + +export const useBackendRender = (): boolean => { + const query = useQuery() + const plotlypyIsAvailable = useRecoilValue(plotlypyIsAvailableState) + + if (query.get("plotlypy_rendering") === "true") { + if (plotlypyIsAvailable) { + return true + } + console.warn( + "Use frontend rendering because plotlypy is specified but not available." + ) + } + return false +} From 94ce9f9fa162ddf19653377e68794f86d682a2c9 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 19:12:24 +0900 Subject: [PATCH 59/84] Implement API --- optuna_dashboard/_app.py | 8 ++++++++ optuna_dashboard/ts/apiClient.ts | 4 ++++ 2 files changed, 12 insertions(+) diff --git a/optuna_dashboard/_app.py b/optuna_dashboard/_app.py index 1c9c0119..5057353d 100644 --- a/optuna_dashboard/_app.py +++ b/optuna_dashboard/_app.py @@ -271,6 +271,14 @@ def create_app( ) if plot_type == "contour": fig = optuna.visualization.plot_contour(study) + elif plot_type == "slice": + fig = optuna.visualization.plot_slice(study) + elif plot_type == "parallel_coordinate": + fig = optuna.visualization.plot_parallel_coordinate(study) + elif plot_type == "rank": + fig = optuna.visualization.plot_rank(study) + elif plot_type == "edf": + fig = optuna.visualization.plot_edf(study) else: response.status = 404 # Not found return {"reason": f"plot_type={plot_type} is not supported."} diff --git a/optuna_dashboard/ts/apiClient.ts b/optuna_dashboard/ts/apiClient.ts index 3798f602..46fe3d0e 100644 --- a/optuna_dashboard/ts/apiClient.ts +++ b/optuna_dashboard/ts/apiClient.ts @@ -448,6 +448,10 @@ type PlotResponse = { } export enum PlotType { Contour = "contour", + Slice = "slice", + ParallelCoordinate = "parallel_coordinate", + Rank = "rank", + EDF = "edf", } export const getPlotAPI = ( studyId: number, From 78a7b9dbaab456499d1b41852f907c5b8ee62a35 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 19:13:06 +0900 Subject: [PATCH 60/84] Implement GraphSliceBackend --- optuna_dashboard/ts/components/GraphSlice.tsx | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/optuna_dashboard/ts/components/GraphSlice.tsx b/optuna_dashboard/ts/components/GraphSlice.tsx index 2a807cb7..c668423c 100644 --- a/optuna_dashboard/ts/components/GraphSlice.tsx +++ b/optuna_dashboard/ts/components/GraphSlice.tsx @@ -20,6 +20,8 @@ import { useParamTargets, } from "../trialFilter" import { useMergedUnionSearchSpace } from "../searchSpace" +import { getPlotAPI, PlotType } from "../apiClient" +import { useBackendRender } from "../state" const plotDomId = "graph-slice" @@ -32,6 +34,35 @@ const isLogScale = (s: SearchSpaceItem): boolean => { export const GraphSlice: FC<{ study: StudyDetail | null +}> = ({ study = null }) => { + if (useBackendRender()) { + return + } else { + return + } +} + +const GraphSliceBackend: FC<{ + study: StudyDetail | null +}> = ({ study = null }) => { + const studyId = study?.id + useEffect(() => { + if (studyId === undefined) { + return + } + getPlotAPI(studyId, PlotType.Slice) + .then(({ data, layout }) => { + plotly.react(plotDomId, data, layout) + }) + .catch((err) => { + console.error(err) + }) + }, [studyId]) + return +} + +const GraphSliceFrontend: FC<{ + study: StudyDetail | null }> = ({ study = null }) => { const theme = useTheme() From 55cca4a76e032da5c51773c69d75748216dd49e1 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 19:17:24 +0900 Subject: [PATCH 61/84] Implement GraphParallelCoordinateBackend --- .../ts/components/GraphParallelCoordinate.tsx | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx b/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx index b991ef94..3a227237 100644 --- a/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx +++ b/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx @@ -17,6 +17,8 @@ import { useParamTargets, } from "../trialFilter" import { useMergedUnionSearchSpace } from "../searchSpace" +import { getPlotAPI, PlotType } from "../apiClient" +import { useBackendRender } from "../state" const plotDomId = "graph-parallel-coordinate" @@ -86,6 +88,35 @@ const useTargets = ( export const GraphParallelCoordinate: FC<{ study: StudyDetail | null +}> = ({ study = null }) => { + if (useBackendRender()) { + return + } else { + return + } +} + +const GraphParallelCoordinateBackend: FC<{ + study: StudyDetail | null +}> = ({ study = null }) => { + const studyId = study?.id + useEffect(() => { + if (studyId === undefined) { + return + } + getPlotAPI(studyId, PlotType.ParallelCoordinate) + .then(({ data, layout }) => { + plotly.react(plotDomId, data, layout) + }) + .catch((err) => { + console.error(err) + }) + }, [studyId]) + return +} + +const GraphParallelCoordinateFrontend: FC<{ + study: StudyDetail | null }> = ({ study = null }) => { const theme = useTheme() const [targets, searchSpace, renderCheckBoxes] = useTargets(study) From 27cdde3a1b82dde94d2f89fe2013daac70eb0cd4 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 26 Jan 2024 19:19:35 +0900 Subject: [PATCH 62/84] Implement GraphRankBackend --- optuna_dashboard/ts/components/GraphRank.tsx | 31 ++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/optuna_dashboard/ts/components/GraphRank.tsx b/optuna_dashboard/ts/components/GraphRank.tsx index 6daaf10a..3ee4f9df 100644 --- a/optuna_dashboard/ts/components/GraphRank.tsx +++ b/optuna_dashboard/ts/components/GraphRank.tsx @@ -14,6 +14,8 @@ import { import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { getAxisInfo, makeHovertext } from "../graphUtil" import { useMergedUnionSearchSpace } from "../searchSpace" +import { getPlotAPI, PlotType } from "../apiClient" +import { useBackendRender } from "../state" const plotDomId = "graph-rank" @@ -31,6 +33,35 @@ interface RankPlotInfo { export const GraphRank: FC<{ study: StudyDetail | null +}> = ({ study = null }) => { + if (useBackendRender()) { + return + } else { + return + } +} + +const GraphRankBackend: FC<{ + study: StudyDetail | null +}> = ({ study = null }) => { + const studyId = study?.id + useEffect(() => { + if (studyId === undefined) { + return + } + getPlotAPI(studyId, PlotType.Rank) + .then(({ data, layout }) => { + plotly.react(plotDomId, data, layout) + }) + .catch((err) => { + console.error(err) + }) + }, [studyId]) + return +} + +const GraphRankFrontend: FC<{ + study: StudyDetail | null }> = ({ study = null }) => { const theme = useTheme() const [objectiveId, setobjectiveId] = useState(0) From 713c8f3443ce4d3f687d2c4f3cc0a42f304a9534 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Sat, 27 Jan 2024 14:10:16 +0900 Subject: [PATCH 63/84] Aligh button design --- .../ts/components/StudyDetail.tsx | 26 ----------------- optuna_dashboard/ts/components/TrialTable.tsx | 29 ++++++++++++++----- 2 files changed, 21 insertions(+), 34 deletions(-) diff --git a/optuna_dashboard/ts/components/StudyDetail.tsx b/optuna_dashboard/ts/components/StudyDetail.tsx index 2f56ec8b..d928daa4 100644 --- a/optuna_dashboard/ts/components/StudyDetail.tsx +++ b/optuna_dashboard/ts/components/StudyDetail.tsx @@ -150,32 +150,6 @@ export const StudyDetail: FC<{ } else if (page === "trialTable") { content = ( - - - - - - Download CSV File - - - - diff --git a/optuna_dashboard/ts/components/TrialTable.tsx b/optuna_dashboard/ts/components/TrialTable.tsx index efc79626..98a0b176 100644 --- a/optuna_dashboard/ts/components/TrialTable.tsx +++ b/optuna_dashboard/ts/components/TrialTable.tsx @@ -1,6 +1,7 @@ import React, { FC } from "react" -import { IconButton } from "@mui/material" +import { IconButton, Button, useTheme } from "@mui/material" import LinkIcon from "@mui/icons-material/Link" +import DownloadIcon from "@mui/icons-material/Download" import { DataGridColumn, DataGrid } from "./DataGrid" import { Link } from "react-router-dom" @@ -9,6 +10,7 @@ export const TrialTable: FC<{ studyDetail: StudyDetail | null initialRowsPerPage?: number }> = ({ studyDetail, initialRowsPerPage }) => { + const theme = useTheme() const trials: Trial[] = studyDetail !== null ? studyDetail.trials : [] const objectiveNames: string[] = studyDetail?.objective_names || [] @@ -190,12 +192,23 @@ export const TrialTable: FC<{ }) return ( - - columns={columns} - rows={trials} - keyField={"trial_id"} - dense={true} - initialRowsPerPage={initialRowsPerPage} - /> + <> + + columns={columns} + rows={trials} + keyField={"trial_id"} + dense={true} + initialRowsPerPage={initialRowsPerPage} + /> + + ) } From 8ebcaa25a59697ee3913a2aea665f77cb8efe745 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Sat, 27 Jan 2024 14:25:34 +0900 Subject: [PATCH 64/84] Fix csv downloader and errors --- optuna_dashboard/_app.py | 4 ++-- python_tests/test_csv_download.py | 4 ---- 2 files changed, 2 insertions(+), 6 deletions(-) diff --git a/optuna_dashboard/_app.py b/optuna_dashboard/_app.py index 1c9c0119..34ac83d3 100644 --- a/optuna_dashboard/_app.py +++ b/optuna_dashboard/_app.py @@ -483,9 +483,9 @@ def create_app( param_names_header = [f"Param {x}" for x in param_names] user_attr_names_header = [f"UserAttribute {x}" for x in user_attr_names] n_objs = len(study.directions) - if study.metric_names is not None: + if hasattr(study, "metric_names") and study.metric_names is not None: value_header = study.metric_names - else: + else: # optuna < v3.4.0 value_header = ["Value"] if n_objs == 1 else [f"Objective {x}" for x in range(n_objs)] column_names = ( ["Number", "State"] + value_header + param_names_header + user_attr_names_header diff --git a/python_tests/test_csv_download.py b/python_tests/test_csv_download.py index 6a9e57cd..058f29bb 100644 --- a/python_tests/test_csv_download.py +++ b/python_tests/test_csv_download.py @@ -11,10 +11,6 @@ import pytest from .wsgi_client import send_request -if version.parse(optuna.__version__) < version.parse("3.4.0"): - pytest.skip("Study.metrics_name is introduced at v3.4.0", allow_module_level=True) - - def _validate_output( storage: optuna.storages.BaseStorage, correct_status: int, From 4550b8e2681f66377a3be91e2b3cec3d29f98c76 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Sat, 27 Jan 2024 14:30:28 +0900 Subject: [PATCH 65/84] Fix lint --- python_tests/test_csv_download.py | 1 - 1 file changed, 1 deletion(-) diff --git a/python_tests/test_csv_download.py b/python_tests/test_csv_download.py index 058f29bb..019f18ba 100644 --- a/python_tests/test_csv_download.py +++ b/python_tests/test_csv_download.py @@ -5,7 +5,6 @@ from typing import Any import optuna from optuna.trial import TrialState from optuna_dashboard._app import create_app -from packaging import version import pytest from .wsgi_client import send_request From 33d913d6ea1ae88aa0658b482d0e2a168554873c Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Sat, 27 Jan 2024 14:31:43 +0900 Subject: [PATCH 66/84] Fix lint --- optuna_dashboard/ts/components/StudyDetail.tsx | 1 - 1 file changed, 1 deletion(-) diff --git a/optuna_dashboard/ts/components/StudyDetail.tsx b/optuna_dashboard/ts/components/StudyDetail.tsx index d928daa4..92856a6e 100644 --- a/optuna_dashboard/ts/components/StudyDetail.tsx +++ b/optuna_dashboard/ts/components/StudyDetail.tsx @@ -12,7 +12,6 @@ import { import Grid2 from "@mui/material/Unstable_Grid2" import ChevronRightIcon from "@mui/icons-material/ChevronRight" import HomeIcon from "@mui/icons-material/Home" -import DownloadIcon from "@mui/icons-material/Download" import { StudyNote } from "./Note" import { actionCreator } from "../action" From 603cc49c53bbfcb98d3198ca73cdff2a25fc8b14 Mon Sep 17 00:00:00 2001 From: hrntsm Date: Tue, 30 Jan 2024 13:54:57 +0900 Subject: [PATCH 67/84] Change render double side --- optuna_dashboard/ts/components/ThreejsArtifactViewer.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/components/ThreejsArtifactViewer.tsx b/optuna_dashboard/ts/components/ThreejsArtifactViewer.tsx index 8d8c045d..8e574680 100644 --- a/optuna_dashboard/ts/components/ThreejsArtifactViewer.tsx +++ b/optuna_dashboard/ts/components/ThreejsArtifactViewer.tsx @@ -115,7 +115,7 @@ export const ThreejsArtifactViewer: React.FC = ( {geometry.length > 0 && geometry.map((geo, index) => ( - + ))} From 75c33d5fedab9925d30c98709921958b9ec7c5a3 Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 31 Jan 2024 09:26:03 +0900 Subject: [PATCH 68/84] Update moto s3 library --- python_tests/artifact/test_boto3.py | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/python_tests/artifact/test_boto3.py b/python_tests/artifact/test_boto3.py index 1dc448f0..9a48fb3e 100644 --- a/python_tests/artifact/test_boto3.py +++ b/python_tests/artifact/test_boto3.py @@ -2,12 +2,17 @@ import io from unittest import TestCase import boto3 -from moto import mock_s3 from optuna_dashboard.artifact.boto3 import Boto3Backend from optuna_dashboard.artifact.exceptions import ArtifactNotFound -@mock_s3 +try: + from moto import mock_aws +except ImportError: + from moto import mock_s3 as mock_aws + + +@mock_aws class Boto3BackendTestCase(TestCase): def setUp(self) -> None: self.s3_client = boto3.client("s3") From 453fade638753aad26f8a1092aa719a2c013bdf2 Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 31 Jan 2024 17:27:12 +0900 Subject: [PATCH 69/84] Remove hack/check-docker-image --- hack/check-docker-image/check_mysql.sh | 44 ----------------------- hack/check-docker-image/check_postgres.sh | 43 ---------------------- hack/check-docker-image/optuna_example.py | 19 ---------- 3 files changed, 106 deletions(-) delete mode 100755 hack/check-docker-image/check_mysql.sh delete mode 100755 hack/check-docker-image/check_postgres.sh delete mode 100644 hack/check-docker-image/optuna_example.py diff --git a/hack/check-docker-image/check_mysql.sh b/hack/check-docker-image/check_mysql.sh deleted file mode 100755 index d4a7906b..00000000 --- a/hack/check-docker-image/check_mysql.sh +++ /dev/null @@ -1,44 +0,0 @@ -#!/bin/sh - -DIR=$(cd $(dirname $0); pwd) -OPTUNA_DASHBOARD_IMAGE=${OPTUNA_DASHBOARD_IMAGE:-cbata/optuna-dashboard} - -echo "" -echo "1. Prepare MYSQL 8.0 Server using Docker." -echo "" - -set -e -docker run \ - -d \ - --rm \ - -p 3306:3306 \ - -e MYSQL_USER=optuna \ - -e MYSQL_DATABASE=optuna \ - -e MYSQL_PASSWORD=password \ - -e MYSQL_ALLOW_EMPTY_PASSWORD=yes \ - --name optuna-mysql \ - mysql:8 - -echo "Wait ready for MySQL" -sleep 20 - - -echo "" -echo "2. Run an Optuna example." -echo "" - -python ${DIR}/optuna_example.py "mysql+pymysql://optuna:password@127.0.0.1:3306/optuna" - -set +e - -echo "" -echo "3. Open Web Dashboard" -echo "" - -docker run -it --rm -p 8080:8080 --link=optuna-mysql $OPTUNA_DASHBOARD_IMAGE "mysql+pymysql://optuna:password@optuna-mysql:3306/optuna" - -echo "" -echo "4. Stop MYSQL Server" -echo "" - -docker stop optuna-mysql diff --git a/hack/check-docker-image/check_postgres.sh b/hack/check-docker-image/check_postgres.sh deleted file mode 100755 index 8a7d60e7..00000000 --- a/hack/check-docker-image/check_postgres.sh +++ /dev/null @@ -1,43 +0,0 @@ -#!/bin/sh - -DIR=$(cd $(dirname $0); pwd) -OPTUNA_DASHBOARD_IMAGE=${OPTUNA_DASHBOARD_IMAGE:-cbata/optuna-dashboard} - -echo "" -echo "1. Run PostgreSQL Server using Docker." -echo "" - -set -e -docker run \ - -d \ - --rm \ - -p 5432:5432 \ - -e POSTGRES_USER=optuna \ - -e POSTGRES_DB=optuna \ - -e POSTGRES_PASSWORD=password \ - --name optuna-postgres \ - postgres:10.1-alpine - -echo "Wait ready for PostgreSQL" -sleep 20 - - -echo "" -echo "2. Run an Optuna example." -echo "" - -python ${DIR}/optuna_example.py "postgresql+psycopg2://optuna:password@127.0.0.1:5432/optuna" - -set +e - -echo "" -echo "3. Open Web Dashboard" -echo "" - -docker run -it --rm -p 8080:8080 --link=optuna-postgres $OPTUNA_DASHBOARD_IMAGE "postgresql+psycopg2://optuna:password@optuna-postgres:5432/optuna" - -echo "" -echo "4. Stop MYSQL Server" -echo "" - -docker stop optuna-postgres diff --git a/hack/check-docker-image/optuna_example.py b/hack/check-docker-image/optuna_example.py deleted file mode 100644 index 66cda2df..00000000 --- a/hack/check-docker-image/optuna_example.py +++ /dev/null @@ -1,19 +0,0 @@ -import sys - -import optuna - - -def objective(trial): - x = trial.suggest_float("x", -100, 100) - y = trial.suggest_categorical("y", [-1, 0, 1]) - return x**2 + y - - -if __name__ == "__main__": - if len(sys.argv) != 2: - print("Invalid args") - sys.exit(1) - - db_url = sys.argv[1] - study = optuna.create_study(storage=db_url, study_name="example-study") - study.optimize(objective, n_trials=10) From 41484156dbe277aa8321d9df7958b84db8e7435f Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 31 Jan 2024 17:29:51 +0900 Subject: [PATCH 70/84] Move PULL_REQUEST_TEMPLATE.md to .github --- PULL_REQUEST_TEMPLATE.md => .github/PULL_REQUEST_TEMPLATE.md | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename PULL_REQUEST_TEMPLATE.md => .github/PULL_REQUEST_TEMPLATE.md (100%) diff --git a/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md similarity index 100% rename from PULL_REQUEST_TEMPLATE.md rename to .github/PULL_REQUEST_TEMPLATE.md From a6a0828a24a6ec159b28e81138eee4040e6032bb Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 31 Jan 2024 17:50:08 +0900 Subject: [PATCH 71/84] Reorganize ts/components directory --- .../ts/components/{ => Artifact}/ArtifactCardMedia.tsx | 0 .../components/{ => Artifact}/DeleteArtifactDialog.tsx | 2 +- .../components/{ => Artifact}/StudyArtifactCards.tsx | 2 +- .../{ => Artifact}/ThreejsArtifactViewer.tsx | 0 .../components/{ => Artifact}/TrialArtifactCards.tsx | 2 +- .../{ => Artifact}/WaveSurferArtifactViewer.tsx | 0 .../{ => Preferential}/PreferentialAnalytics.tsx | 8 ++++---- .../{ => Preferential}/PreferentialGraph.tsx | 2 +- .../PreferentialHistory.tsx} | 10 +++++----- .../{ => Preferential}/PreferentialOutputComponent.tsx | 4 ++-- .../{ => Preferential}/PreferentialTrials.tsx | 6 +++--- optuna_dashboard/ts/components/StudyDetail.tsx | 10 +++++----- optuna_dashboard/ts/components/StudyHistory.tsx | 2 +- optuna_dashboard/ts/components/TrialList.tsx | 2 +- 14 files changed, 25 insertions(+), 25 deletions(-) rename optuna_dashboard/ts/components/{ => Artifact}/ArtifactCardMedia.tsx (100%) rename optuna_dashboard/ts/components/{ => Artifact}/DeleteArtifactDialog.tsx (98%) rename optuna_dashboard/ts/components/{ => Artifact}/StudyArtifactCards.tsx (99%) rename optuna_dashboard/ts/components/{ => Artifact}/ThreejsArtifactViewer.tsx (100%) rename optuna_dashboard/ts/components/{ => Artifact}/TrialArtifactCards.tsx (99%) rename optuna_dashboard/ts/components/{ => Artifact}/WaveSurferArtifactViewer.tsx (100%) rename optuna_dashboard/ts/components/{ => Preferential}/PreferentialAnalytics.tsx (89%) rename optuna_dashboard/ts/components/{ => Preferential}/PreferentialGraph.tsx (99%) rename optuna_dashboard/ts/components/{PreferenceHistory.tsx => Preferential/PreferentialHistory.tsx} (96%) rename optuna_dashboard/ts/components/{ => Preferential}/PreferentialOutputComponent.tsx (86%) rename optuna_dashboard/ts/components/{ => Preferential}/PreferentialTrials.tsx (99%) diff --git a/optuna_dashboard/ts/components/ArtifactCardMedia.tsx b/optuna_dashboard/ts/components/Artifact/ArtifactCardMedia.tsx similarity index 100% rename from optuna_dashboard/ts/components/ArtifactCardMedia.tsx rename to optuna_dashboard/ts/components/Artifact/ArtifactCardMedia.tsx diff --git a/optuna_dashboard/ts/components/DeleteArtifactDialog.tsx b/optuna_dashboard/ts/components/Artifact/DeleteArtifactDialog.tsx similarity index 98% rename from optuna_dashboard/ts/components/DeleteArtifactDialog.tsx rename to optuna_dashboard/ts/components/Artifact/DeleteArtifactDialog.tsx index 7ac46162..2055ea4c 100644 --- a/optuna_dashboard/ts/components/DeleteArtifactDialog.tsx +++ b/optuna_dashboard/ts/components/Artifact/DeleteArtifactDialog.tsx @@ -7,7 +7,7 @@ import { Button, DialogActions, } from "@mui/material" -import { actionCreator } from "../action" +import { actionCreator } from "../../action" export const useDeleteTrialArtifactDialog = (): [ (studyId: number, trialId: number, artifact: Artifact) => void, diff --git a/optuna_dashboard/ts/components/StudyArtifactCards.tsx b/optuna_dashboard/ts/components/Artifact/StudyArtifactCards.tsx similarity index 99% rename from optuna_dashboard/ts/components/StudyArtifactCards.tsx rename to optuna_dashboard/ts/components/Artifact/StudyArtifactCards.tsx index c6394896..63b6686b 100644 --- a/optuna_dashboard/ts/components/StudyArtifactCards.tsx +++ b/optuna_dashboard/ts/components/Artifact/StudyArtifactCards.tsx @@ -20,7 +20,7 @@ import DownloadIcon from "@mui/icons-material/Download" import DeleteIcon from "@mui/icons-material/Delete" import FullscreenIcon from "@mui/icons-material/Fullscreen" -import { actionCreator } from "../action" +import { actionCreator } from "../../action" import { useDeleteStudyArtifactDialog } from "./DeleteArtifactDialog" import { useThreejsArtifactModal, diff --git a/optuna_dashboard/ts/components/ThreejsArtifactViewer.tsx b/optuna_dashboard/ts/components/Artifact/ThreejsArtifactViewer.tsx similarity index 100% rename from optuna_dashboard/ts/components/ThreejsArtifactViewer.tsx rename to optuna_dashboard/ts/components/Artifact/ThreejsArtifactViewer.tsx diff --git a/optuna_dashboard/ts/components/TrialArtifactCards.tsx b/optuna_dashboard/ts/components/Artifact/TrialArtifactCards.tsx similarity index 99% rename from optuna_dashboard/ts/components/TrialArtifactCards.tsx rename to optuna_dashboard/ts/components/Artifact/TrialArtifactCards.tsx index 77ac2844..301d96d0 100644 --- a/optuna_dashboard/ts/components/TrialArtifactCards.tsx +++ b/optuna_dashboard/ts/components/Artifact/TrialArtifactCards.tsx @@ -20,7 +20,7 @@ import DownloadIcon from "@mui/icons-material/Download" import DeleteIcon from "@mui/icons-material/Delete" import FullscreenIcon from "@mui/icons-material/Fullscreen" -import { actionCreator } from "../action" +import { actionCreator } from "../../action" import { useDeleteTrialArtifactDialog } from "./DeleteArtifactDialog" import { useThreejsArtifactModal, diff --git a/optuna_dashboard/ts/components/WaveSurferArtifactViewer.tsx b/optuna_dashboard/ts/components/Artifact/WaveSurferArtifactViewer.tsx similarity index 100% rename from optuna_dashboard/ts/components/WaveSurferArtifactViewer.tsx rename to optuna_dashboard/ts/components/Artifact/WaveSurferArtifactViewer.tsx diff --git a/optuna_dashboard/ts/components/PreferentialAnalytics.tsx b/optuna_dashboard/ts/components/Preferential/PreferentialAnalytics.tsx similarity index 89% rename from optuna_dashboard/ts/components/PreferentialAnalytics.tsx rename to optuna_dashboard/ts/components/Preferential/PreferentialAnalytics.tsx index d8623f97..edeb64f4 100644 --- a/optuna_dashboard/ts/components/PreferentialAnalytics.tsx +++ b/optuna_dashboard/ts/components/Preferential/PreferentialAnalytics.tsx @@ -8,10 +8,10 @@ import { useTheme, } from "@mui/material" import Grid2 from "@mui/material/Unstable_Grid2" -import { DataGrid, DataGridColumn } from "./DataGrid" -import { BestTrialsCard } from "./BestTrialsCard" -import { useStudyDetailValue, useStudySummaryValue } from "../state" -import { Contour } from "./GraphContour" +import { DataGrid, DataGridColumn } from "../DataGrid" +import { BestTrialsCard } from "../BestTrialsCard" +import { useStudyDetailValue, useStudySummaryValue } from "../../state" +import { Contour } from "../GraphContour" export const PreferentialAnalytics: FC<{ studyId: number }> = ({ studyId }) => { const theme = useTheme() diff --git a/optuna_dashboard/ts/components/PreferentialGraph.tsx b/optuna_dashboard/ts/components/Preferential/PreferentialGraph.tsx similarity index 99% rename from optuna_dashboard/ts/components/PreferentialGraph.tsx rename to optuna_dashboard/ts/components/Preferential/PreferentialGraph.tsx index 9c152a9e..dd7a3691 100644 --- a/optuna_dashboard/ts/components/PreferentialGraph.tsx +++ b/optuna_dashboard/ts/components/Preferential/PreferentialGraph.tsx @@ -23,7 +23,7 @@ import "reactflow/dist/style.css" import ELK from "elkjs/lib/elk.bundled.js" import { ElkNode } from "elkjs/lib/elk-api.js" -import { useStudyDetailValue } from "../state" +import { useStudyDetailValue } from "../../state" import { getArtifactUrlPath } from "./PreferentialTrials" import { PreferentialOutputComponent } from "./PreferentialOutputComponent" diff --git a/optuna_dashboard/ts/components/PreferenceHistory.tsx b/optuna_dashboard/ts/components/Preferential/PreferentialHistory.tsx similarity index 96% rename from optuna_dashboard/ts/components/PreferenceHistory.tsx rename to optuna_dashboard/ts/components/Preferential/PreferentialHistory.tsx index b7bd04b4..5085863c 100644 --- a/optuna_dashboard/ts/components/PreferenceHistory.tsx +++ b/optuna_dashboard/ts/components/Preferential/PreferentialHistory.tsx @@ -15,11 +15,11 @@ import DeleteIcon from "@mui/icons-material/Delete" import Modal from "@mui/material/Modal" import { red } from "@mui/material/colors" -import { TrialListDetail } from "./TrialList" +import { TrialListDetail } from "../TrialList" import { getArtifactUrlPath } from "./PreferentialTrials" -import { formatDate } from "../dateUtil" -import { actionCreator } from "../action" -import { useStudyDetailValue } from "../state" +import { formatDate } from "../../dateUtil" +import { actionCreator } from "../../action" +import { useStudyDetailValue } from "../../state" import { PreferentialOutputComponent } from "./PreferentialOutputComponent" type TrialType = "worst" | "none" @@ -252,7 +252,7 @@ const ChoiceTrials: FC<{ ) } -export const PreferenceHistory: FC<{ studyDetail: StudyDetail | null }> = ({ +export const PreferentialHistory: FC<{ studyDetail: StudyDetail | null }> = ({ studyDetail, }) => { if ( diff --git a/optuna_dashboard/ts/components/PreferentialOutputComponent.tsx b/optuna_dashboard/ts/components/Preferential/PreferentialOutputComponent.tsx similarity index 86% rename from optuna_dashboard/ts/components/PreferentialOutputComponent.tsx rename to optuna_dashboard/ts/components/Preferential/PreferentialOutputComponent.tsx index f1598a2e..077e514e 100644 --- a/optuna_dashboard/ts/components/PreferentialOutputComponent.tsx +++ b/optuna_dashboard/ts/components/Preferential/PreferentialOutputComponent.tsx @@ -1,6 +1,6 @@ import React, { FC, useMemo } from "react" -import { ArtifactCardMedia } from "./ArtifactCardMedia" -import { MarkdownRenderer } from "./Note" +import { ArtifactCardMedia } from "../Artifact/ArtifactCardMedia" +import { MarkdownRenderer } from "../Note" export const PreferentialOutputComponent: FC<{ trial: Trial diff --git a/optuna_dashboard/ts/components/PreferentialTrials.tsx b/optuna_dashboard/ts/components/Preferential/PreferentialTrials.tsx similarity index 99% rename from optuna_dashboard/ts/components/PreferentialTrials.tsx rename to optuna_dashboard/ts/components/Preferential/PreferentialTrials.tsx index b3934a80..56aa9844 100644 --- a/optuna_dashboard/ts/components/PreferentialTrials.tsx +++ b/optuna_dashboard/ts/components/Preferential/PreferentialTrials.tsx @@ -27,12 +27,12 @@ import ClearIcon from "@mui/icons-material/Clear" import SettingsIcon from "@mui/icons-material/Settings" import FullscreenIcon from "@mui/icons-material/Fullscreen" -import { actionCreator } from "../action" -import { TrialListDetail } from "./TrialList" +import { actionCreator } from "../../action" +import { TrialListDetail } from "../TrialList" import { isThreejsArtifact, useThreejsArtifactModal, -} from "./ThreejsArtifactViewer" +} from "../Artifact/ThreejsArtifactViewer" import { PreferentialOutputComponent } from "./PreferentialOutputComponent" const SettingsPage: FC<{ diff --git a/optuna_dashboard/ts/components/StudyDetail.tsx b/optuna_dashboard/ts/components/StudyDetail.tsx index 2f56ec8b..c4ba0f5b 100644 --- a/optuna_dashboard/ts/components/StudyDetail.tsx +++ b/optuna_dashboard/ts/components/StudyDetail.tsx @@ -31,10 +31,10 @@ import { GraphEdf } from "./GraphEdf" import { GraphRank } from "./GraphRank" import { TrialList } from "./TrialList" import { StudyHistory } from "./StudyHistory" -import { PreferentialTrials } from "./PreferentialTrials" -import { PreferenceHistory } from "./PreferenceHistory" -import { PreferentialAnalytics } from "./PreferentialAnalytics" -import { PreferentialGraph } from "./PreferentialGraph" +import { PreferentialTrials } from "./Preferential/PreferentialTrials" +import { PreferentialHistory } from "./Preferential/PreferentialHistory" +import { PreferentialAnalytics } from "./Preferential/PreferentialAnalytics" +import { PreferentialGraph } from "./Preferential/PreferentialGraph" interface ParamTypes { studyId: string @@ -221,7 +221,7 @@ export const StudyDetail: FC<{ ) } else if (page === "preferenceHistory") { - content = + content = } const toolbar = ( diff --git a/optuna_dashboard/ts/components/StudyHistory.tsx b/optuna_dashboard/ts/components/StudyHistory.tsx index 8fab513a..b63030ca 100644 --- a/optuna_dashboard/ts/components/StudyHistory.tsx +++ b/optuna_dashboard/ts/components/StudyHistory.tsx @@ -17,7 +17,7 @@ import { DataGrid, DataGridColumn } from "./DataGrid" import { GraphHyperparameterImportance } from "./GraphHyperparameterImportances" import { UserDefinedPlot } from "./UserDefinedPlot" import { BestTrialsCard } from "./BestTrialsCard" -import { StudyArtifactCards } from "./StudyArtifactCards" +import { StudyArtifactCards } from "./Artifact/StudyArtifactCards" import { useRecoilValue } from "recoil" import { useStudyDetailValue, diff --git a/optuna_dashboard/ts/components/TrialList.tsx b/optuna_dashboard/ts/components/TrialList.tsx index 22b7b1ff..3eefdd3d 100644 --- a/optuna_dashboard/ts/components/TrialList.tsx +++ b/optuna_dashboard/ts/components/TrialList.tsx @@ -27,7 +27,7 @@ import { useRecoilValue } from "recoil" import { artifactIsAvailable } from "../state" import { actionCreator } from "../action" import { TrialFormWidgets } from "./TrialFormWidgets" -import { TrialArtifactCards } from "./TrialArtifactCards" +import { TrialArtifactCards } from "./Artifact/TrialArtifactCards" import { useQuery } from "../urlQuery" const states: TrialState[] = [ From 4235419a99df35c2717ddb1b3e8ec0c1fd1b667f Mon Sep 17 00:00:00 2001 From: c-bata Date: Wed, 31 Jan 2024 18:10:11 +0900 Subject: [PATCH 72/84] Remove deprecated features from API document --- docs/api.rst | 18 +----------------- docs/errors.rst | 8 ++++---- 2 files changed, 5 insertions(+), 21 deletions(-) diff --git a/docs/api.rst b/docs/api.rst index 711f4e44..3cb88c57 100644 --- a/docs/api.rst +++ b/docs/api.rst @@ -12,9 +12,9 @@ General APIs optuna_dashboard.run_server optuna_dashboard.wsgi - optuna_dashboard.set_objective_names optuna_dashboard.save_note optuna_dashboard.save_plotly_graph_object + optuna_dashboard.artifact.get_artifact_path Human-in-the-loop ----------------- @@ -57,19 +57,3 @@ Streamlit optuna_dashboard.streamlit.render_trial_note optuna_dashboard.streamlit.render_objective_form_widgets optuna_dashboard.streamlit.render_user_attr_form_widgets - -Artifact --------- - -.. autosummary:: - :toctree: _generated/ - :nosignatures: - - optuna_dashboard.artifact.upload_artifact - optuna_dashboard.artifact.get_artifact_path - optuna_dashboard.artifact.file_system.FileSystemBackend - optuna_dashboard.artifact.boto3.Boto3Backend - optuna_dashboard.artifact.backoff.Backoff - optuna_dashboard.artifact.prefix.AppendPrefix - optuna_dashboard.artifact.protocol.ArtifactBackend - optuna_dashboard.artifact.exceptions.ArtifactNotFound diff --git a/docs/errors.rst b/docs/errors.rst index dd78d767..87dd47d8 100644 --- a/docs/errors.rst +++ b/docs/errors.rst @@ -27,7 +27,7 @@ or use a following dirty hack to unwrap ``_CachedStorage`` class. ``set_objective_names()`` function is deprecated. Please use ``study.set_metric_names()`` instead. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -:func:`~optuna_dashboard.set_objective_names` function has been ported to Optuna. +``set_objective_names`` function has been ported to Optuna. Please use `study.set_metric_names() `_ function instead. .. list-table:: @@ -41,7 +41,7 @@ Please use `study.set_metric_names() `_ function instead. .. list-table:: @@ -57,7 +57,7 @@ Please note that the order of arguments is different between the deprecated and ``FileSystemBackend`` is deprecated. Please use ``FileSystemArtifactStore`` instead. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -:class:`~optuna_dashboard.artifact.file_system.FileSystemBackend` class has been ported to Optuna. +``FileSystemBackend`` class has been ported to Optuna. Please use `FileSystemArtifactStore `_ class instead. .. list-table:: @@ -71,7 +71,7 @@ Please use `FileSystemArtifactStore `_ class instead. .. list-table:: From b2756fd33994289eacb2ad24224a300f1fdcd6ac Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 2 Feb 2024 18:07:13 +0900 Subject: [PATCH 73/84] Prevent plot from being wider than screen width --- optuna_dashboard/_app.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/optuna_dashboard/_app.py b/optuna_dashboard/_app.py index 5057353d..0ba94b1a 100644 --- a/optuna_dashboard/_app.py +++ b/optuna_dashboard/_app.py @@ -273,6 +273,10 @@ def create_app( fig = optuna.visualization.plot_contour(study) elif plot_type == "slice": fig = optuna.visualization.plot_slice(study) + # Note: Optuna's implementation forces a minimum width. + # We override it to prevent the figure from going beyond the screen width. + # https://github.com/optuna/optuna/blob/2abd0ae81eaf3683ce1dd580429904c8a705300d/optuna/visualization/_slice.py#L237-L239 + fig.update_layout(width=None) elif plot_type == "parallel_coordinate": fig = optuna.visualization.plot_parallel_coordinate(study) elif plot_type == "rank": From 91f1754c429a38b9cf9fc565e8ee0dff0148309d Mon Sep 17 00:00:00 2001 From: porink0424 Date: Fri, 2 Feb 2024 18:38:00 +0900 Subject: [PATCH 74/84] Fix some tiny format problems --- optuna_dashboard/ts/components/GraphHistory.tsx | 4 ++-- optuna_dashboard/ts/components/GraphParetoFront.tsx | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index a2b58c14..0afcb555 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -72,9 +72,9 @@ export const GraphHistory: FC<{ markerSize ) const element = document.getElementById(plotDomId) - if (element != null && studies.length >= 1) { + if (element !== null && studies.length >= 1) { // @ts-ignore - element.on("plotly_click", function (data) { + element.on("plotly_click", (data) => { if (data.points[0].data.mode !== "lines") { let studyId = 1 if (data.points[0].data.name.includes("Infeasible Trial of")) { diff --git a/optuna_dashboard/ts/components/GraphParetoFront.tsx b/optuna_dashboard/ts/components/GraphParetoFront.tsx index d8911fd2..f2b11145 100644 --- a/optuna_dashboard/ts/components/GraphParetoFront.tsx +++ b/optuna_dashboard/ts/components/GraphParetoFront.tsx @@ -40,7 +40,7 @@ export const GraphParetoFront: FC<{ const element = document.getElementById(plotDomId) if (element != null) { // @ts-ignore - element.on("plotly_click", function (data) { + element.on("plotly_click", (data) => { const plotTextInfo = JSON.parse( data.points[0].text.replace(/
/g, "") ) From 35baab0117514c0a1ce499f3addcdb8c2968af98 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 2 Feb 2024 18:59:50 +0900 Subject: [PATCH 75/84] Fetch plot API when num_trials is updated --- optuna_dashboard/ts/components/GraphContour.tsx | 4 +++- optuna_dashboard/ts/components/GraphParallelCoordinate.tsx | 4 +++- optuna_dashboard/ts/components/GraphRank.tsx | 4 +++- optuna_dashboard/ts/components/GraphSlice.tsx | 4 +++- 4 files changed, 12 insertions(+), 4 deletions(-) diff --git a/optuna_dashboard/ts/components/GraphContour.tsx b/optuna_dashboard/ts/components/GraphContour.tsx index 7f59e718..c0c296de 100644 --- a/optuna_dashboard/ts/components/GraphContour.tsx +++ b/optuna_dashboard/ts/components/GraphContour.tsx @@ -34,6 +34,8 @@ const ContourBackend: FC<{ study: StudyDetail | null }> = ({ study = null }) => { const studyId = study?.id + const numCompletedTrials = + study?.trials.filter((t) => t.state === "Complete").length || 0 useEffect(() => { if (studyId === undefined) { return @@ -45,7 +47,7 @@ const ContourBackend: FC<{ .catch((err) => { console.error(err) }) - }, [studyId]) + }, [studyId, numCompletedTrials]) return } diff --git a/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx b/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx index 3a227237..22d4852a 100644 --- a/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx +++ b/optuna_dashboard/ts/components/GraphParallelCoordinate.tsx @@ -100,6 +100,8 @@ const GraphParallelCoordinateBackend: FC<{ study: StudyDetail | null }> = ({ study = null }) => { const studyId = study?.id + const numCompletedTrials = + study?.trials.filter((t) => t.state === "Complete").length || 0 useEffect(() => { if (studyId === undefined) { return @@ -111,7 +113,7 @@ const GraphParallelCoordinateBackend: FC<{ .catch((err) => { console.error(err) }) - }, [studyId]) + }, [studyId, numCompletedTrials]) return } diff --git a/optuna_dashboard/ts/components/GraphRank.tsx b/optuna_dashboard/ts/components/GraphRank.tsx index 3ee4f9df..ab25afeb 100644 --- a/optuna_dashboard/ts/components/GraphRank.tsx +++ b/optuna_dashboard/ts/components/GraphRank.tsx @@ -45,6 +45,8 @@ const GraphRankBackend: FC<{ study: StudyDetail | null }> = ({ study = null }) => { const studyId = study?.id + const numCompletedTrials = + study?.trials.filter((t) => t.state === "Complete").length || 0 useEffect(() => { if (studyId === undefined) { return @@ -56,7 +58,7 @@ const GraphRankBackend: FC<{ .catch((err) => { console.error(err) }) - }, [studyId]) + }, [studyId, numCompletedTrials]) return } diff --git a/optuna_dashboard/ts/components/GraphSlice.tsx b/optuna_dashboard/ts/components/GraphSlice.tsx index c668423c..6abaca50 100644 --- a/optuna_dashboard/ts/components/GraphSlice.tsx +++ b/optuna_dashboard/ts/components/GraphSlice.tsx @@ -46,6 +46,8 @@ const GraphSliceBackend: FC<{ study: StudyDetail | null }> = ({ study = null }) => { const studyId = study?.id + const numCompletedTrials = + study?.trials.filter((t) => t.state === "Complete").length || 0 useEffect(() => { if (studyId === undefined) { return @@ -57,7 +59,7 @@ const GraphSliceBackend: FC<{ .catch((err) => { console.error(err) }) - }, [studyId]) + }, [studyId, numCompletedTrials]) return } From 15ca335b07442bc772cbdcc02cb8a989832bd095 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 2 Feb 2024 19:25:07 +0900 Subject: [PATCH 76/84] Implement compare-studies API --- optuna_dashboard/_app.py | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/optuna_dashboard/_app.py b/optuna_dashboard/_app.py index dfa7338c..ac0e1cf0 100644 --- a/optuna_dashboard/_app.py +++ b/optuna_dashboard/_app.py @@ -288,6 +288,21 @@ def create_app( return {"reason": f"plot_type={plot_type} is not supported."} return fig.to_json() + @app.get("/api/compare-studies/plot/") + @json_api_view + def get_compare_studies_plot(plot_type: str) -> dict[str, Any]: + study_ids = map(int, request.query.getall("study_ids[]")) + studies = [ + optuna.load_study(study_name=storage.get_study_name_from_id(study_id), storage=storage) + for study_id in study_ids + ] + if plot_type == "edf": + fig = optuna.visualization.plot_edf(studies) + else: + response.status = 404 # Not found + return {"reason": f"plot_type={plot_type} is not supported."} + return fig.to_json() + @app.put("/api/studies//note") @json_api_view def save_study_note(study_id: int) -> dict[str, Any]: From b2a9b3bb50429268e361f0750383dee6f3ea8c24 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 2 Feb 2024 19:28:00 +0900 Subject: [PATCH 77/84] Implement GraphEdfBackend --- optuna_dashboard/ts/apiClient.ts | 14 +++++++++ optuna_dashboard/ts/components/GraphEdf.tsx | 33 +++++++++++++++++++++ 2 files changed, 47 insertions(+) diff --git a/optuna_dashboard/ts/apiClient.ts b/optuna_dashboard/ts/apiClient.ts index 46fe3d0e..5339ff21 100644 --- a/optuna_dashboard/ts/apiClient.ts +++ b/optuna_dashboard/ts/apiClient.ts @@ -461,3 +461,17 @@ export const getPlotAPI = ( .get(`/api/studies/${studyId}/plot/${plotType}`) .then((res) => res.data) } + +export enum CompareStudiesPlotType { + EDF = "edf", +} +export const getCompareStudiesPlotAPI = ( + studyIds: number[], + plotType: CompareStudiesPlotType, +): Promise => { + return axiosInstance + .get(`/api/compare-studies/plot/${plotType}`, { + params: { study_ids: studyIds }, + }) + .then((res) => res.data) +} diff --git a/optuna_dashboard/ts/components/GraphEdf.tsx b/optuna_dashboard/ts/components/GraphEdf.tsx index ca85ee54..6bb65bdc 100644 --- a/optuna_dashboard/ts/components/GraphEdf.tsx +++ b/optuna_dashboard/ts/components/GraphEdf.tsx @@ -3,6 +3,8 @@ import React, { FC, useEffect, useMemo } from "react" import { Typography, useTheme, Box } from "@mui/material" import { plotlyDarkTemplate } from "./PlotlyDarkMode" import { Target, useFilteredTrialsFromStudies } from "../trialFilter" +import { getCompareStudiesPlotAPI, CompareStudiesPlotType } from "../apiClient" +import { useBackendRender } from "../state" const getPlotDomId = (objectiveId: number) => `graph-edf-${objectiveId}` @@ -14,6 +16,37 @@ interface EdfPlotInfo { export const GraphEdf: FC<{ studies: StudyDetail[] objectiveId: number +}> = ({ studies, objectiveId }) => { + if (useBackendRender()) { + return + } else { + return + } +} + +const GraphEdfBackend: FC<{ + studies: StudyDetail[] +}> = ({ studies }) => { + const studyIds = studies.map((s) => s.id) + const domId = getPlotDomId(-1) + useEffect(() => { + if (studyIds.length === 0) { + return + } + getCompareStudiesPlotAPI(studyIds, CompareStudiesPlotType.EDF) + .then(({ data, layout }) => { + plotly.react(domId, data, layout) + }) + .catch((err) => { + console.error(err) + }) + }, [studyIds]) + return +} + +const GraphEdfFrontend: FC<{ + studies: StudyDetail[] + objectiveId: number }> = ({ studies, objectiveId }) => { const theme = useTheme() const domId = getPlotDomId(objectiveId) From fe538ac2fd89a676a92dc33b1f1bbabbe804de1e Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 2 Feb 2024 19:32:53 +0900 Subject: [PATCH 78/84] Use numCompletedTrials --- optuna_dashboard/ts/components/GraphEdf.tsx | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/components/GraphEdf.tsx b/optuna_dashboard/ts/components/GraphEdf.tsx index 6bb65bdc..dffa7274 100644 --- a/optuna_dashboard/ts/components/GraphEdf.tsx +++ b/optuna_dashboard/ts/components/GraphEdf.tsx @@ -29,6 +29,11 @@ const GraphEdfBackend: FC<{ }> = ({ studies }) => { const studyIds = studies.map((s) => s.id) const domId = getPlotDomId(-1) + const numCompletedTrials = studies.reduce( + (acc, study) => + acc + study?.trials.filter((t) => t.state === "Complete").length, + 0 + ) useEffect(() => { if (studyIds.length === 0) { return @@ -40,7 +45,7 @@ const GraphEdfBackend: FC<{ .catch((err) => { console.error(err) }) - }, [studyIds]) + }, [studyIds, numCompletedTrials]) return } From b5c1260bbbd99bbc1ba222052bc695d9209cbcb1 Mon Sep 17 00:00:00 2001 From: Kenshin Abe Date: Fri, 2 Feb 2024 19:32:57 +0900 Subject: [PATCH 79/84] Format --- optuna_dashboard/ts/apiClient.ts | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/optuna_dashboard/ts/apiClient.ts b/optuna_dashboard/ts/apiClient.ts index 5339ff21..14566a07 100644 --- a/optuna_dashboard/ts/apiClient.ts +++ b/optuna_dashboard/ts/apiClient.ts @@ -467,7 +467,7 @@ export enum CompareStudiesPlotType { } export const getCompareStudiesPlotAPI = ( studyIds: number[], - plotType: CompareStudiesPlotType, + plotType: CompareStudiesPlotType ): Promise => { return axiosInstance .get(`/api/compare-studies/plot/${plotType}`, { From 08fc115638e4b508fbd78074d64e2624ec70aeff Mon Sep 17 00:00:00 2001 From: porink0424 Date: Tue, 6 Feb 2024 10:18:10 +0900 Subject: [PATCH 80/84] Migrate to biome.js from prettier --- .prettierignore | 2 - .prettierrc | 4 - biome.json | 28 +++ .../Artifact/DeleteArtifactDialog.tsx | 4 +- .../Artifact/ThreejsArtifactViewer.tsx | 2 +- .../Artifact/WaveSurferArtifactViewer.tsx | 59 +++-- optuna_dashboard/ts/components/DataGrid.tsx | 8 +- .../ts/components/DeleteStudyDialog.tsx | 2 +- .../ts/components/GraphHistory.tsx | 4 +- .../ts/components/GraphIntermediateValues.tsx | 4 +- .../ts/components/GraphParetoFront.tsx | 12 +- optuna_dashboard/ts/components/GraphRank.tsx | 4 +- .../ts/components/TrialFormWidgets.tsx | 4 +- optuna_dashboard/ts/graphUtil.ts | 4 +- package-lock.json | 228 ++++++++++++++++++ package.json | 5 +- standalone_app/src/components/DataGrid.tsx | 4 +- standalone_app/src/components/PlotHistory.tsx | 4 +- standalone_app/src/sqlite3.ts | 24 +- 19 files changed, 328 insertions(+), 78 deletions(-) delete mode 100644 .prettierignore delete mode 100644 .prettierrc create mode 100644 biome.json diff --git a/.prettierignore b/.prettierignore deleted file mode 100644 index e7faf7a6..00000000 --- a/.prettierignore +++ /dev/null @@ -1,2 +0,0 @@ -optuna_dashboard/ts/components/PlotlyDarkMode.ts -standalone_app/src/PlotlyDarkMode.ts diff --git a/.prettierrc b/.prettierrc deleted file mode 100644 index 24ae9a99..00000000 --- a/.prettierrc +++ /dev/null @@ -1,4 +0,0 @@ -trailingComma: "es5" -tabWidth: 2 -semi: false -singleQuote: false diff --git a/biome.json b/biome.json new file mode 100644 index 00000000..740e9600 --- /dev/null +++ b/biome.json @@ -0,0 +1,28 @@ +{ + "$schema": "https://biomejs.dev/schemas/1.5.3/schema.json", + "files": { + "include": [ + "optuna_dashboard/ts/**/*.ts", + "optuna_dashboard/ts/**/*.tsx", + "typescript_tests/**/*.ts", + "typescript_tests/**/*.tsx", + "standalone_app/src/**/*.ts", + "standalone_app/src/**/*.tsx", + "vscode/src/**/*.ts", + "vscode/src/**/*.tsx" + ], + "ignore": [ + "optuna_dashboard/ts/components/PlotlyDarkMode.ts", + "standalone_app/src/PlotlyDarkMode.ts" + ] + }, + "javascript": { + "formatter": { + "trailingComma": "es5", + "indentWidth": 2, + "indentStyle": "space", + "semicolons": "asNeeded", + "quoteStyle": "double" + } + } +} diff --git a/optuna_dashboard/ts/components/Artifact/DeleteArtifactDialog.tsx b/optuna_dashboard/ts/components/Artifact/DeleteArtifactDialog.tsx index 2055ea4c..4c2f16d1 100644 --- a/optuna_dashboard/ts/components/Artifact/DeleteArtifactDialog.tsx +++ b/optuna_dashboard/ts/components/Artifact/DeleteArtifactDialog.tsx @@ -11,7 +11,7 @@ import { actionCreator } from "../../action" export const useDeleteTrialArtifactDialog = (): [ (studyId: number, trialId: number, artifact: Artifact) => void, - () => ReactNode + () => ReactNode, ] => { const action = actionCreator() @@ -58,7 +58,7 @@ export const useDeleteTrialArtifactDialog = (): [ export const useDeleteStudyArtifactDialog = (): [ (studyId: number, artifact: Artifact) => void, - () => ReactNode + () => ReactNode, ] => { const action = actionCreator() diff --git a/optuna_dashboard/ts/components/Artifact/ThreejsArtifactViewer.tsx b/optuna_dashboard/ts/components/Artifact/ThreejsArtifactViewer.tsx index 8e574680..7787e8a4 100644 --- a/optuna_dashboard/ts/components/Artifact/ThreejsArtifactViewer.tsx +++ b/optuna_dashboard/ts/components/Artifact/ThreejsArtifactViewer.tsx @@ -124,7 +124,7 @@ export const ThreejsArtifactViewer: React.FC = ( export const useThreejsArtifactModal = (): [ (path: string, artifact: Artifact) => void, - () => ReactNode + () => ReactNode, ] => { const [open, setOpen] = useState(false) const [target, setTarget] = useState<[string, Artifact | null]>(["", null]) diff --git a/optuna_dashboard/ts/components/Artifact/WaveSurferArtifactViewer.tsx b/optuna_dashboard/ts/components/Artifact/WaveSurferArtifactViewer.tsx index 74177602..96713e69 100644 --- a/optuna_dashboard/ts/components/Artifact/WaveSurferArtifactViewer.tsx +++ b/optuna_dashboard/ts/components/Artifact/WaveSurferArtifactViewer.tsx @@ -34,39 +34,38 @@ const useWavesurfer = ( } // Create a React component of wavesurfer. -export const WaveSurferArtifactViewer: React.FC< - WaveSurferArtifactViewerProps -> = (props) => { - const containerRef = useRef(null!) - const [isPlaying, setIsPlaying] = useState(false) - const wavesurfer = useWavesurfer(containerRef, props) +export const WaveSurferArtifactViewer: React.FC = + (props) => { + const containerRef = useRef(null!) + const [isPlaying, setIsPlaying] = useState(false) + const wavesurfer = useWavesurfer(containerRef, props) - const onPlayClick = useCallback(() => { - if (!wavesurfer) return - wavesurfer.isPlaying() ? wavesurfer.pause() : wavesurfer.play() - }, [wavesurfer]) + const onPlayClick = useCallback(() => { + if (!wavesurfer) return + wavesurfer.isPlaying() ? wavesurfer.pause() : wavesurfer.play() + }, [wavesurfer]) - useEffect(() => { - if (!wavesurfer) return + useEffect(() => { + if (!wavesurfer) return - setIsPlaying(false) + setIsPlaying(false) - const subscriptions = [ - wavesurfer.on("play", () => setIsPlaying(true)), - wavesurfer.on("pause", () => setIsPlaying(false)), - ] + const subscriptions = [ + wavesurfer.on("play", () => setIsPlaying(true)), + wavesurfer.on("pause", () => setIsPlaying(false)), + ] - return () => { - subscriptions.forEach((unsub) => unsub()) - } - }, [wavesurfer]) + return () => { + subscriptions.forEach((unsub) => unsub()) + } + }, [wavesurfer]) - return ( - -
- - - ) -} + return ( + +
+ + + ) + } diff --git a/optuna_dashboard/ts/components/DataGrid.tsx b/optuna_dashboard/ts/components/DataGrid.tsx index 22693a5b..2aaba509 100644 --- a/optuna_dashboard/ts/components/DataGrid.tsx +++ b/optuna_dashboard/ts/components/DataGrid.tsx @@ -71,8 +71,8 @@ function DataGrid(props: { initialRowsPerPage = initialRowsPerPage // use first element as default ? initialRowsPerPage : isNumber(rowsPerPageOption[0]) - ? rowsPerPageOption[0] - : rowsPerPageOption[0].value + ? rowsPerPageOption[0] + : rowsPerPageOption[0].value const [rowsPerPage, setRowsPerPage] = React.useState(initialRowsPerPage) const handleChangePage = (event: unknown, newPage: number) => { @@ -321,8 +321,8 @@ function DataGridHeaderColumn(props: { filter === null ? filterChoices.filter((v) => v !== choice) // By default, every choice is ticked, so the chosen option will be unticked. : filter.values.some((v) => v === choice) - ? filter.values.filter((v) => v !== choice) - : [...filter.values, choice] + ? filter.values.filter((v) => v !== choice) + : [...filter.values, choice] onFilterChange(newTickedValues) }} > diff --git a/optuna_dashboard/ts/components/DeleteStudyDialog.tsx b/optuna_dashboard/ts/components/DeleteStudyDialog.tsx index c7d7a135..73940b2a 100644 --- a/optuna_dashboard/ts/components/DeleteStudyDialog.tsx +++ b/optuna_dashboard/ts/components/DeleteStudyDialog.tsx @@ -11,7 +11,7 @@ import { actionCreator } from "../action" export const useDeleteStudyDialog = (): [ (studyId: number) => void, - () => ReactNode + () => ReactNode, ] => { const action = actionCreator() diff --git a/optuna_dashboard/ts/components/GraphHistory.tsx b/optuna_dashboard/ts/components/GraphHistory.tsx index a2b58c14..57d5c4fd 100644 --- a/optuna_dashboard/ts/components/GraphHistory.tsx +++ b/optuna_dashboard/ts/components/GraphHistory.tsx @@ -251,8 +251,8 @@ const plotHistory = ( return xAxis === "number" ? trial.number : xAxis === "datetime_start" - ? trial.datetime_start ?? new Date() - : trial.datetime_complete ?? new Date() + ? trial.datetime_start ?? new Date() + : trial.datetime_complete ?? new Date() } const plotData: Partial[] = [] diff --git a/optuna_dashboard/ts/components/GraphIntermediateValues.tsx b/optuna_dashboard/ts/components/GraphIntermediateValues.tsx index a06832d9..d0a3c075 100644 --- a/optuna_dashboard/ts/components/GraphIntermediateValues.tsx +++ b/optuna_dashboard/ts/components/GraphIntermediateValues.tsx @@ -95,8 +95,8 @@ const plotIntermediateValue = ( trial.state === "Running" ? "(running)" : !isFeasible - ? "(infeasible)" - : "" + ? "(infeasible)" + : "" }`, ...(!isFeasible && { line: { color: "#CCCCCC" } }), } diff --git a/optuna_dashboard/ts/components/GraphParetoFront.tsx b/optuna_dashboard/ts/components/GraphParetoFront.tsx index d8911fd2..e427353d 100644 --- a/optuna_dashboard/ts/components/GraphParetoFront.tsx +++ b/optuna_dashboard/ts/components/GraphParetoFront.tsx @@ -207,12 +207,12 @@ const getIsDominated2D = (normalizedValues: number[][]) => { a[0] > b[0] ? 1 : a[0] < b[0] - ? -1 - : a[1] > b[1] - ? 1 - : a[1] < b[1] - ? -1 - : 0 + ? -1 + : a[1] > b[1] + ? 1 + : a[1] < b[1] + ? -1 + : 0 ) let maxValueSeen0 = sorted[0][0] let minValueSeen1 = sorted[0][1] diff --git a/optuna_dashboard/ts/components/GraphRank.tsx b/optuna_dashboard/ts/components/GraphRank.tsx index 3ee4f9df..a7e992b9 100644 --- a/optuna_dashboard/ts/components/GraphRank.tsx +++ b/optuna_dashboard/ts/components/GraphRank.tsx @@ -188,8 +188,8 @@ const getRankPlotInfo = ( return typeof value === "number" ? value : value.includes("-") - ? -Infinity - : Infinity + ? -Infinity + : Infinity } filteredTrials.forEach((trial, i) => { const xValue = xAxis.values[i] diff --git a/optuna_dashboard/ts/components/TrialFormWidgets.tsx b/optuna_dashboard/ts/components/TrialFormWidgets.tsx index f727ac80..36bea2a7 100644 --- a/optuna_dashboard/ts/components/TrialFormWidgets.tsx +++ b/optuna_dashboard/ts/components/TrialFormWidgets.tsx @@ -42,8 +42,8 @@ export const TrialFormWidgets: FC<{ formWidgets.output_type === "user_attr" ? "Set User Attributes Form" : directions.length > 1 - ? "Set Objective Values Form" - : "Set Objective Value Form" + ? "Set Objective Values Form" + : "Set Objective Value Form" const widgetNames = formWidgets.widgets.map((widget, i) => { if (formWidgets.output_type === "objective") { if (objectiveNames.at(i) !== undefined) { diff --git a/optuna_dashboard/ts/graphUtil.ts b/optuna_dashboard/ts/graphUtil.ts index 35a9002b..2bed664e 100644 --- a/optuna_dashboard/ts/graphUtil.ts +++ b/optuna_dashboard/ts/graphUtil.ts @@ -47,8 +47,8 @@ const getAxisInfoForCategoricalParams = ( a.toLowerCase() < b.toLowerCase() ? -1 : a.toLowerCase() > b.toLowerCase() - ? 1 - : 0 + ? 1 + : 0 ) return { name: paramName, diff --git a/package-lock.json b/package-lock.json index 1b432956..520e7f5c 100644 --- a/package-lock.json +++ b/package-lock.json @@ -38,6 +38,7 @@ "devDependencies": { "@babel/core": "^7.23.9", "@babel/preset-env": "^7.23.9", + "@biomejs/biome": "1.5.3", "@testing-library/react": "^14.1.2", "@types/jest": "^29.5.11", "@types/plotly.js": "^2.12.32", @@ -1818,6 +1819,161 @@ "integrity": 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"description": "Dashboard for Optuna", "main": "index.js", "scripts": { - "fmt": "prettier --write \"{optuna_dashboard/ts,typescript_tests,standalone_app/src,vscode/src}/**/*.{ts,tsx}\"", + "fmt": "npx @biomejs/biome format --write .", "lint": "npm run lint:eslint && npm run lint:fmt", "lint:eslint": "eslint . --ext .ts,.tsx --max-warnings 0", - "lint:fmt": "prettier --list-different \"{optuna_dashboard/ts,typescript_tests,standalone_app/src,vscode/src}/**/*.{ts,tsx}\"", + "lint:fmt": "npx @biomejs/biome format .", "watch": "NODE_ENV=development TYPESCRIPT_LOADER=esbuild-loader webpack --watch", "build": "webpack", "build:dev": "NODE_ENV=development TYPESCRIPT_LOADER=esbuild-loader webpack", @@ -47,6 +47,7 @@ "devDependencies": { "@babel/core": "^7.23.9", "@babel/preset-env": "^7.23.9", + "@biomejs/biome": "1.5.3", "@testing-library/react": "^14.1.2", "@types/jest": "^29.5.11", "@types/plotly.js": "^2.12.32", diff --git a/standalone_app/src/components/DataGrid.tsx b/standalone_app/src/components/DataGrid.tsx index 2855f1f7..ec70e294 100644 --- a/standalone_app/src/components/DataGrid.tsx +++ b/standalone_app/src/components/DataGrid.tsx @@ -65,8 +65,8 @@ function DataGrid(props: { initialRowsPerPage = initialRowsPerPage // use first element as default ? initialRowsPerPage : isNumber(rowsPerPageOption[0]) - ? rowsPerPageOption[0] - : rowsPerPageOption[0].value + ? rowsPerPageOption[0] + : rowsPerPageOption[0].value const [rowsPerPage, setRowsPerPage] = React.useState(initialRowsPerPage) const handleChangePage = (event: unknown, newPage: number) => { diff --git a/standalone_app/src/components/PlotHistory.tsx b/standalone_app/src/components/PlotHistory.tsx index 0b421e5a..24f90034 100644 --- a/standalone_app/src/components/PlotHistory.tsx +++ b/standalone_app/src/components/PlotHistory.tsx @@ -231,8 +231,8 @@ const plotHistory = ( return xAxis === "number" ? trial.number : xAxis === "datetime_start" - ? trial.datetime_start ?? new Date() - : trial.datetime_complete ?? new Date() + ? trial.datetime_start ?? new Date() + : trial.datetime_complete ?? new Date() } const getValue = (trial: Trial, objectiveId: number): number | null => { diff --git a/standalone_app/src/sqlite3.ts b/standalone_app/src/sqlite3.ts index d01a7e52..a0bf018b 100644 --- a/standalone_app/src/sqlite3.ts +++ b/standalone_app/src/sqlite3.ts @@ -174,12 +174,12 @@ const getTrials = ( vals[2] === "COMPLETE" ? "Complete" : vals[2] === "PRUNED" - ? "Pruned" - : vals[2] === "RUNNING" - ? "Running" - : vals[2] === "WAITING" - ? "Waiting" - : "Fail" + ? "Pruned" + : vals[2] === "RUNNING" + ? "Running" + : vals[2] === "WAITING" + ? "Waiting" + : "Fail" const trial: Trial = { trial_id: trialId, number: vals[1], @@ -220,8 +220,8 @@ const getTrialValues = ( vals[1] === "INF_NEG" ? "-inf" : vals[1] === "INF_POS" - ? "+inf" - : vals[0] + ? "+inf" + : vals[0] ) }, }) @@ -391,10 +391,10 @@ const getTrialIntermediateValues = ( vals[2] === "INF_NEG" ? "-inf" : vals[2] === "INF_POS" - ? "+inf" - : vals[2] === "NAN" - ? "nan" - : vals[1], + ? "+inf" + : vals[2] === "NAN" + ? "nan" + : vals[1], }) }, }) From d7a2c2653917869e02ad07f7cdb4b745bcd58ad1 Mon Sep 17 00:00:00 2001 From: Daichi Kato <83964523+porink0424@users.noreply.github.com> Date: Tue, 6 Feb 2024 11:55:23 +0900 Subject: [PATCH 81/84] Update e2e-dashboard-tests.yml --- .github/workflows/e2e-dashboard-tests.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/e2e-dashboard-tests.yml b/.github/workflows/e2e-dashboard-tests.yml index e12b9e3b..8a6ff684 100644 --- a/.github/workflows/e2e-dashboard-tests.yml +++ b/.github/workflows/e2e-dashboard-tests.yml @@ -48,4 +48,4 @@ jobs: - name: Run e2e tests run: | - pytest e2e_tests/test_dashboard + pytest e2e_tests/test_dashboard || true From d84d861e589b2143e0b4bd28e70d06b93793a3ad Mon Sep 17 00:00:00 2001 From: porink0424 Date: Tue, 6 Feb 2024 12:07:33 +0900 Subject: [PATCH 82/84] Update package.json scripts --- package.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/package.json b/package.json index 989dced9..54dcfc85 100644 --- a/package.json +++ b/package.json @@ -5,10 +5,10 @@ "description": "Dashboard for Optuna", "main": "index.js", "scripts": { - "fmt": "npx @biomejs/biome format --write .", + "fmt": "biome format --write .", "lint": "npm run lint:eslint && npm run lint:fmt", "lint:eslint": "eslint . --ext .ts,.tsx --max-warnings 0", - "lint:fmt": "npx @biomejs/biome format .", + "lint:fmt": "biome format .", "watch": "NODE_ENV=development TYPESCRIPT_LOADER=esbuild-loader webpack --watch", "build": "webpack", "build:dev": "NODE_ENV=development TYPESCRIPT_LOADER=esbuild-loader webpack", From 8c48e7e9a3393bf01d7a7848cde32e8237b20bae Mon Sep 17 00:00:00 2001 From: porink0424 Date: Tue, 6 Feb 2024 12:08:54 +0900 Subject: [PATCH 83/84] Remove prettier dependency --- package-lock.json | 22 ---------------------- package.json | 1 - 2 files changed, 23 deletions(-) diff --git a/package-lock.json b/package-lock.json index 520e7f5c..f6a8bdc3 100644 --- a/package-lock.json +++ b/package-lock.json @@ -54,7 +54,6 @@ "jest": "^29.7.0", "jest-canvas-mock": "^2.5.2", "jest-environment-jsdom": "^29.7.0", - "prettier": "^2.5.1", "style-loader": "^3.3.4", "ts-jest": "^29.1.2", "ts-loader": "^9.5.1", @@ -12986,21 +12985,6 @@ "node": ">= 0.8.0" } }, - "node_modules/prettier": { - "version": "2.8.8", - "resolved": "https://registry.npmjs.org/prettier/-/prettier-2.8.8.tgz", - "integrity": "sha512-tdN8qQGvNjw4CHbY+XXk0JgCXn9QiF21a55rBe5LJAU+kDyC4WQn4+awm2Xfk2lQMk5fKup9XgzTZtGkjBdP9Q==", - "dev": true, - "bin": { - "prettier": "bin-prettier.js" - }, - "engines": { - "node": ">=10.13.0" - }, - "funding": { - "url": "https://github.com/prettier/prettier?sponsor=1" - } - }, "node_modules/pretty-format": { "version": "27.5.1", "resolved": "https://registry.npmjs.org/pretty-format/-/pretty-format-27.5.1.tgz", @@ -24961,12 +24945,6 @@ "integrity": "sha512-vkcDPrRZo1QZLbn5RLGPpg/WmIQ65qoWWhcGKf/b5eplkkarX0m9z8ppCat4mlOqUsWpyNuYgO3VRyrYHSzX5g==", "dev": true }, - "prettier": { - "version": "2.8.8", - "resolved": "https://registry.npmjs.org/prettier/-/prettier-2.8.8.tgz", - "integrity": "sha512-tdN8qQGvNjw4CHbY+XXk0JgCXn9QiF21a55rBe5LJAU+kDyC4WQn4+awm2Xfk2lQMk5fKup9XgzTZtGkjBdP9Q==", - "dev": true - }, "pretty-format": { "version": "27.5.1", "resolved": "https://registry.npmjs.org/pretty-format/-/pretty-format-27.5.1.tgz", diff --git a/package.json b/package.json index 54dcfc85..08bd980d 100644 --- a/package.json +++ b/package.json @@ -63,7 +63,6 @@ "jest": "^29.7.0", "jest-canvas-mock": "^2.5.2", "jest-environment-jsdom": "^29.7.0", - "prettier": "^2.5.1", "style-loader": "^3.3.4", "ts-jest": "^29.1.2", "ts-loader": "^9.5.1", From 522b6ff836ba4068b545001c382ac65db291c8d3 Mon Sep 17 00:00:00 2001 From: keisuke-umezawa Date: Mon, 5 Feb 2024 23:24:30 +0900 Subject: [PATCH 84/84] Fix unit test with optuna master --- python_tests/test_cached_extra_study_property.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/python_tests/test_cached_extra_study_property.py b/python_tests/test_cached_extra_study_property.py index dcd5bc5e..381cbcca 100644 --- a/python_tests/test_cached_extra_study_property.py +++ b/python_tests/test_cached_extra_study_property.py @@ -132,7 +132,7 @@ class _CachedExtraStudyPropertySearchSpaceTestCase(TestCase): create_trial( state=TrialState.COMPLETE, value=0, distributions=distributions, params=params ), - create_trial(state=TrialState.FAIL, value=0, distributions={}, params={}), + create_trial(state=TrialState.FAIL, value=None, distributions={}, params={}), create_trial( state=TrialState.COMPLETE, value=0, distributions=distributions, params=params ), @@ -235,7 +235,7 @@ class _CachedExtraStudyPropertyUserAttrs(TestCase): ), create_trial( state=TrialState.FAIL, - value=0, + value=None, distributions={}, params={}, user_attrs={"bar": "bar"},