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In [ ]:
# ! rm -r unilm
# ! pip install unilmIn [ ]:
# ! wget https://guillaumejaume.github.io/FUNSD/dataset.zip
# ! unzip dataset.zip && mv dataset data && rm -rf dataset.zip __MACOSXIn [ ]:
from PIL import Image, ImageDraw, ImageFont
import os
base_path = "/home/sourab/temp/data/dataset"
image = Image.open(os.path.join(base_path, "training_data/images/0000971160.png"))
image = image.convert("RGB")
imageIn [ ]:
import json
with open(os.path.join(base_path, "training_data/annotations/0000971160.json")) as f:
data = json.load(f)
for annotation in data["form"]:
print(annotation)In [ ]:
draw = ImageDraw.Draw(image, "RGBA")
font = ImageFont.load_default()
label2color = {"question": "blue", "answer": "green", "header": "orange", "other": "violet"}
for annotation in data["form"]:
label = annotation["label"]
general_box = annotation["box"]
draw.rectangle(general_box, outline=label2color[label], width=2)
draw.text((general_box[0] + 10, general_box[1] - 10), label, fill=label2color[label], font=font)
words = annotation["words"]
for word in words:
box = word["box"]
draw.rectangle(box, outline=label2color[label], width=1)
imageIn [4]:
# ! python unilm/layoutlm/examples/seq_labeling/preprocess.py --data_dir data/dataset/training_data/annotations \
# --data_split train \
# --output_dir data \
# --model_name_or_path microsoft/layoutlm-base-uncased \
# --max_len 510
# ! python unilm/layoutlm/examples/seq_labeling/preprocess.py --data_dir data/dataset/testing_data/annotations \
# --data_split test \
# --output_dir data \
# --model_name_or_path microsoft/layoutlm-base-uncased \
# --max_len 510In [5]:
# ! cat data/train.txt | cut -d$'\t' -f 2 | grep -v "^$"| sort | uniq > data/labels.txtIn [6]:
from torch.nn import CrossEntropyLoss
def get_labels(path):
with open(path, "r") as f:
labels = f.read().splitlines()
if "O" not in labels:
labels = ["O"] + labels
return labels
labels = get_labels("data/labels.txt")
num_labels = len(labels)
label_map = {i: label for i, label in enumerate(labels)}
# Use cross entropy ignore index as padding label id so that only real label ids contribute to the loss later
pad_token_label_id = CrossEntropyLoss().ignore_indexIn [7]:
print(labels)['B-ANSWER', 'B-HEADER', 'B-QUESTION', 'E-ANSWER', 'E-HEADER', 'E-QUESTION', 'I-ANSWER', 'I-HEADER', 'I-QUESTION', 'O', 'S-ANSWER', 'S-HEADER', 'S-QUESTION']
In [8]:
import logging
import os
import torch
from torch.utils.data import Dataset
logger = logging.getLogger(__name__)
class FunsdDataset(Dataset):
def __init__(self, args, tokenizer, labels, pad_token_label_id, mode):
if args.local_rank not in [-1, 0] and mode == "train":
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
examples = read_examples_from_file(args.data_dir, mode)
features = convert_examples_to_features(
examples,
labels,
args.max_seq_length,
tokenizer,
cls_token_at_end=bool(args.model_type in ["xlnet"]),
# xlnet has a cls token at the end
cls_token=tokenizer.cls_token,
cls_token_segment_id=2 if args.model_type in ["xlnet"] else 0,
sep_token=tokenizer.sep_token,
sep_token_extra=bool(args.model_type in ["roberta"]),
# roberta uses an extra separator b/w pairs of sentences, cf. github.com/pytorch/fairseq/commit/1684e166e3da03f5b600dbb7855cb98ddfcd0805
pad_on_left=bool(args.model_type in ["xlnet"]),
# pad on the left for xlnet
pad_token=tokenizer.convert_tokens_to_ids([tokenizer.pad_token])[0],
pad_token_segment_id=4 if args.model_type in ["xlnet"] else 0,
pad_token_label_id=pad_token_label_id,
)
# if args.local_rank in [-1, 0]:
# logger.info("Saving features into cached file %s", cached_features_file)
# torch.save(features, cached_features_file)
if args.local_rank == 0 and mode == "train":
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
self.features = features
# Convert to Tensors and build dataset
self.all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
self.all_input_mask = torch.tensor([f.input_mask for f in features], dtype=torch.long)
self.all_segment_ids = torch.tensor([f.segment_ids for f in features], dtype=torch.long)
self.all_label_ids = torch.tensor([f.label_ids for f in features], dtype=torch.long)
self.all_bboxes = torch.tensor([f.boxes for f in features], dtype=torch.long)
def __len__(self):
return len(self.features)
def __getitem__(self, index):
return (
self.all_input_ids[index],
self.all_input_mask[index],
self.all_segment_ids[index],
self.all_label_ids[index],
self.all_bboxes[index],
)
class InputExample(object):
"""A single training/test example for token classification."""
def __init__(self, guid, words, labels, boxes, actual_bboxes, file_name, page_size):
"""Constructs a InputExample.
Args:
guid: Unique id for the example.
words: list. The words of the sequence.
labels: (Optional) list. The labels for each word of the sequence. This should be
specified for train and dev examples, but not for test examples.
"""
self.guid = guid
self.words = words
self.labels = labels
self.boxes = boxes
self.actual_bboxes = actual_bboxes
self.file_name = file_name
self.page_size = page_size
class InputFeatures(object):
"""A single set of features of data."""
def __init__(
self,
input_ids,
input_mask,
segment_ids,
label_ids,
boxes,
actual_bboxes,
file_name,
page_size,
):
assert (
0 <= all(boxes) <= 1000
), "Error with input bbox ({}): the coordinate value is not between 0 and 1000".format(boxes)
self.input_ids = input_ids
self.input_mask = input_mask
self.segment_ids = segment_ids
self.label_ids = label_ids
self.boxes = boxes
self.actual_bboxes = actual_bboxes
self.file_name = file_name
self.page_size = page_size
def read_examples_from_file(data_dir, mode):
file_path = os.path.join(data_dir, "{}.txt".format(mode))
box_file_path = os.path.join(data_dir, "{}_box.txt".format(mode))
image_file_path = os.path.join(data_dir, "{}_image.txt".format(mode))
guid_index = 1
examples = []
with open(file_path, encoding="utf-8") as f, open(box_file_path, encoding="utf-8") as fb, open(
image_file_path, encoding="utf-8"
) as fi:
words = []
boxes = []
actual_bboxes = []
file_name = None
page_size = None
labels = []
for line, bline, iline in zip(f, fb, fi):
if line.startswith("-DOCSTART-") or line == "" or line == "\n":
if words:
examples.append(
InputExample(
guid="{}-{}".format(mode, guid_index),
words=words,
labels=labels,
boxes=boxes,
actual_bboxes=actual_bboxes,
file_name=file_name,
page_size=page_size,
)
)
guid_index += 1
words = []
boxes = []
actual_bboxes = []
file_name = None
page_size = None
labels = []
else:
splits = line.split("\t")
bsplits = bline.split("\t")
isplits = iline.split("\t")
assert len(splits) == 2
assert len(bsplits) == 2
assert len(isplits) == 4
assert splits[0] == bsplits[0]
words.append(splits[0])
if len(splits) > 1:
labels.append(splits[-1].replace("\n", ""))
box = bsplits[-1].replace("\n", "")
box = [int(b) for b in box.split()]
boxes.append(box)
actual_bbox = [int(b) for b in isplits[1].split()]
actual_bboxes.append(actual_bbox)
page_size = [int(i) for i in isplits[2].split()]
file_name = isplits[3].strip()
else:
# Examples could have no label for mode = "test"
labels.append("O")
if words:
examples.append(
InputExample(
guid="%s-%d".format(mode, guid_index),
words=words,
labels=labels,
boxes=boxes,
actual_bboxes=actual_bboxes,
file_name=file_name,
page_size=page_size,
)
)
return examples
def convert_examples_to_features(
examples,
label_list,
max_seq_length,
tokenizer,
cls_token_at_end=False,
cls_token="[CLS]",
cls_token_segment_id=1,
sep_token="[SEP]",
sep_token_extra=False,
pad_on_left=False,
pad_token=0,
cls_token_box=[0, 0, 0, 0],
sep_token_box=[1000, 1000, 1000, 1000],
pad_token_box=[0, 0, 0, 0],
pad_token_segment_id=0,
pad_token_label_id=-1,
sequence_a_segment_id=0,
mask_padding_with_zero=True,
):
"""Loads a data file into a list of `InputBatch`s
`cls_token_at_end` define the location of the CLS token:
- False (Default, BERT/XLM pattern): [CLS] + A + [SEP] + B + [SEP]
- True (XLNet/GPT pattern): A + [SEP] + B + [SEP] + [CLS]
`cls_token_segment_id` define the segment id associated to the CLS token (0 for BERT, 2 for XLNet)
"""
label_map = {label: i for i, label in enumerate(label_list)}
features = []
for ex_index, example in enumerate(examples):
file_name = example.file_name
page_size = example.page_size
width, height = page_size
if ex_index % 10000 == 0:
logger.info("Writing example %d of %d", ex_index, len(examples))
tokens = []
token_boxes = []
actual_bboxes = []
label_ids = []
for word, label, box, actual_bbox in zip(example.words, example.labels, example.boxes, example.actual_bboxes):
word_tokens = tokenizer.tokenize(word)
tokens.extend(word_tokens)
token_boxes.extend([box] * len(word_tokens))
actual_bboxes.extend([actual_bbox] * len(word_tokens))
# Use the real label id for the first token of the word, and padding ids for the remaining tokens
label_ids.extend([label_map[label]] + [pad_token_label_id] * (len(word_tokens) - 1))
# Account for [CLS] and [SEP] with "- 2" and with "- 3" for RoBERTa.
special_tokens_count = 3 if sep_token_extra else 2
if len(tokens) > max_seq_length - special_tokens_count:
tokens = tokens[: (max_seq_length - special_tokens_count)]
token_boxes = token_boxes[: (max_seq_length - special_tokens_count)]
actual_bboxes = actual_bboxes[: (max_seq_length - special_tokens_count)]
label_ids = label_ids[: (max_seq_length - special_tokens_count)]
# The convention in BERT is:
# (a) For sequence pairs:
# tokens: [CLS] is this jack ##son ##ville ? [SEP] no it is not . [SEP]
# type_ids: 0 0 0 0 0 0 0 0 1 1 1 1 1 1
# (b) For single sequences:
# tokens: [CLS] the dog is hairy . [SEP]
# type_ids: 0 0 0 0 0 0 0
#
# Where "type_ids" are used to indicate whether this is the first
# sequence or the second sequence. The embedding vectors for `type=0` and
# `type=1` were learned during pre-training and are added to the wordpiece
# embedding vector (and position vector). This is not *strictly* necessary
# since the [SEP] token unambiguously separates the sequences, but it makes
# it easier for the model to learn the concept of sequences.
#
# For classification tasks, the first vector (corresponding to [CLS]) is
# used as as the "sentence vector". Note that this only makes sense because
# the entire model is fine-tuned.
tokens += [sep_token]
token_boxes += [sep_token_box]
actual_bboxes += [[0, 0, width, height]]
label_ids += [pad_token_label_id]
if sep_token_extra:
# roberta uses an extra separator b/w pairs of sentences
tokens += [sep_token]
token_boxes += [sep_token_box]
actual_bboxes += [[0, 0, width, height]]
label_ids += [pad_token_label_id]
segment_ids = [sequence_a_segment_id] * len(tokens)
if cls_token_at_end:
tokens += [cls_token]
token_boxes += [cls_token_box]
actual_bboxes += [[0, 0, width, height]]
label_ids += [pad_token_label_id]
segment_ids += [cls_token_segment_id]
else:
tokens = [cls_token] + tokens
token_boxes = [cls_token_box] + token_boxes
actual_bboxes = [[0, 0, width, height]] + actual_bboxes
label_ids = [pad_token_label_id] + label_ids
segment_ids = [cls_token_segment_id] + segment_ids
input_ids = tokenizer.convert_tokens_to_ids(tokens)
# The mask has 1 for real tokens and 0 for padding tokens. Only real
# tokens are attended to.
input_mask = [1 if mask_padding_with_zero else 0] * len(input_ids)
# Zero-pad up to the sequence length.
padding_length = max_seq_length - len(input_ids)
if pad_on_left:
input_ids = ([pad_token] * padding_length) + input_ids
input_mask = ([0 if mask_padding_with_zero else 1] * padding_length) + input_mask
segment_ids = ([pad_token_segment_id] * padding_length) + segment_ids
label_ids = ([pad_token_label_id] * padding_length) + label_ids
token_boxes = ([pad_token_box] * padding_length) + token_boxes
else:
input_ids += [pad_token] * padding_length
input_mask += [0 if mask_padding_with_zero else 1] * padding_length
segment_ids += [pad_token_segment_id] * padding_length
label_ids += [pad_token_label_id] * padding_length
token_boxes += [pad_token_box] * padding_length
assert len(input_ids) == max_seq_length
assert len(input_mask) == max_seq_length
assert len(segment_ids) == max_seq_length
assert len(label_ids) == max_seq_length
assert len(token_boxes) == max_seq_length
if ex_index < 5:
logger.info("*** Example ***")
logger.info("guid: %s", example.guid)
logger.info("tokens: %s", " ".join([str(x) for x in tokens]))
logger.info("input_ids: %s", " ".join([str(x) for x in input_ids]))
logger.info("input_mask: %s", " ".join([str(x) for x in input_mask]))
logger.info("segment_ids: %s", " ".join([str(x) for x in segment_ids]))
logger.info("label_ids: %s", " ".join([str(x) for x in label_ids]))
logger.info("boxes: %s", " ".join([str(x) for x in token_boxes]))
logger.info("actual_bboxes: %s", " ".join([str(x) for x in actual_bboxes]))
features.append(
InputFeatures(
input_ids=input_ids,
input_mask=input_mask,
segment_ids=segment_ids,
label_ids=label_ids,
boxes=token_boxes,
actual_bboxes=actual_bboxes,
file_name=file_name,
page_size=page_size,
)
)
return featuresIn [9]:
from transformers import LayoutLMTokenizer
# from .unilm.layoutlm.data.funsd import FunsdDataset, InputFeatures
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler
batch_size = 16
args = {
"local_rank": -1,
"overwrite_cache": True,
"data_dir": "/home/sourab/temp/data/",
"model_name_or_path": "microsoft/layoutlm-base-uncased",
"max_seq_length": 512,
"model_type": "layoutlm",
}
# class to turn the keys of a dict into attributes (thanks Stackoverflow)
class AttrDict(dict):
def __init__(self, *args, **kwargs):
super(AttrDict, self).__init__(*args, **kwargs)
self.__dict__ = self
args = AttrDict(args)
tokenizer = LayoutLMTokenizer.from_pretrained("microsoft/layoutlm-base-uncased")
# the LayoutLM authors already defined a specific FunsdDataset, so we are going to use this here
train_dataset = FunsdDataset(args, tokenizer, labels, pad_token_label_id, mode="train")
train_sampler = RandomSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=batch_size)
eval_dataset = FunsdDataset(args, tokenizer, labels, pad_token_label_id, mode="test")
eval_sampler = SequentialSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=batch_size)In [10]:
len(train_dataloader)Out [10]:
10
In [11]:
len(eval_dataloader)Out [11]:
4
In [ ]:
batch = next(iter(train_dataloader))
input_ids = batch[0][0]
tokenizer.decode(input_ids)In [13]:
from peft import get_peft_config, PeftModel, get_peft_model, LoraConfig, TaskType
peft_config = LoraConfig(
task_type=TaskType.TOKEN_CLS, inference_mode=False, r=16, lora_alpha=16, lora_dropout=0.1, bias="all"
)
peft_configOut [13]:
LoRAConfig(pet_type='LORA', task_type='TOKEN_CLS', inference_mode=False, r=16, target_modules=None, lora_alpha=16, lora_dropout=0.1, merge_weights=False, fan_in_fan_out=False, enable_lora=None, bias='all')
In [ ]:
from transformers import LayoutLMForTokenClassification
import torch
from transformers import set_seed
seed = 100
set_seed(seed)
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
model = LayoutLMForTokenClassification.from_pretrained("microsoft/layoutlm-base-uncased", num_labels=num_labels)
model = get_peft_model(model, peft_config)
model.to(device)In [ ]:
print(model.model.layoutlm.encoder.layer[0].attention.self.query.weight)
print(model.model.layoutlm.encoder.layer[0].attention.self.query.lora_A.weight)
print(model.model.classifier.weight)In [ ]:
from transformers import AdamW, get_linear_schedule_with_warmup
from tqdm import tqdm
num_train_epochs = 100
optimizer = torch.optim.AdamW(model.parameters(), lr=3e-3)
lr_scheduler = get_linear_schedule_with_warmup(
optimizer=optimizer,
num_warmup_steps=0.06 * (len(train_dataloader) * num_train_epochs),
num_training_steps=(len(train_dataloader) * num_train_epochs),
)
global_step = 0
t_total = len(train_dataloader) * num_train_epochs # total number of training steps
# put the model in training mode
model.train()
for epoch in range(num_train_epochs):
for batch in tqdm(train_dataloader, desc="Training"):
input_ids = batch[0].to(device)
bbox = batch[4].to(device)
attention_mask = batch[1].to(device)
token_type_ids = batch[2].to(device)
labels = batch[3].to(device)
# forward pass
outputs = model(
input_ids=input_ids, bbox=bbox, attention_mask=attention_mask, token_type_ids=token_type_ids, labels=labels
)
loss = outputs.loss
# print loss every 100 steps
if global_step % 10 == 0:
print(f"Loss after {global_step} steps: {loss.item()}")
# backward pass to get the gradients
loss.backward()
# print("Gradients on classification head:")
# print(model.classifier.weight.grad[6,:].sum())
# update
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
global_step += 1In [17]:
import numpy as np
from seqeval.metrics import (
classification_report,
f1_score,
precision_score,
recall_score,
)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
# put model in evaluation mode
model.eval()
for batch in tqdm(eval_dataloader, desc="Evaluating"):
with torch.no_grad():
input_ids = batch[0].to(device)
bbox = batch[4].to(device)
attention_mask = batch[1].to(device)
token_type_ids = batch[2].to(device)
labels = batch[3].to(device)
# forward pass
outputs = model(
input_ids=input_ids, bbox=bbox, attention_mask=attention_mask, token_type_ids=token_type_ids, labels=labels
)
# get the loss and logits
tmp_eval_loss = outputs.loss
logits = outputs.logits
eval_loss += tmp_eval_loss.item()
nb_eval_steps += 1
# compute the predictions
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = labels.detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, labels.detach().cpu().numpy(), axis=0)
# compute average evaluation loss
eval_loss = eval_loss / nb_eval_steps
preds = np.argmax(preds, axis=2)
out_label_list = [[] for _ in range(out_label_ids.shape[0])]
preds_list = [[] for _ in range(out_label_ids.shape[0])]
for i in range(out_label_ids.shape[0]):
for j in range(out_label_ids.shape[1]):
if out_label_ids[i, j] != pad_token_label_id:
out_label_list[i].append(label_map[out_label_ids[i][j]])
preds_list[i].append(label_map[preds[i][j]])
results = {
"loss": eval_loss,
"precision": precision_score(out_label_list, preds_list),
"recall": recall_score(out_label_list, preds_list),
"f1": f1_score(out_label_list, preds_list),
}
print(results)Evaluating: 100%|█████████████████████████████████████████████████████| 4/4 [00:00<00:00, 9.73it/s]
{'loss': 1.7456395626068115, 'precision': 0.7407071622846781, 'recall': 0.817408704352176, 'f1': 0.7771700356718193}
In [18]:
model.print_trainable_parameters()trainable params: 702733 || all params: 113227789 || trainable%: 0.6206365117665593
In [19]:
model.save_pretrained("peft_layoutlm")In [21]:
!du -h "peft_layoutlm/adapter_model.bin"2,8M layoutlm_funsd.pt
In [ ]: