split trainer mixins (#209)

* split trainer mixins

* Update multi_node_cluster_template.py

* Update single_cpu_template.py

* Update single_gpu_node_16bit_template.py

* Update single_gpu_node_ddp_template.py

* Update single_gpu_node_dp_template.py

* Update trainer_cpu_template.py

* Update trainer_io.py

* split trainer mixins

* Update multi_node_cluster_template.py

* deconflicted

* deconflicted

* deconflicted
This commit is contained in:
William Falcon
2019-09-06 14:11:07 -04:00
committed by GitHub
parent 60633eaa32
commit 7099f8dbfb
14 changed files with 323 additions and 324 deletions
@@ -1,14 +1,3 @@
import os
import re
import signal
from subprocess import call
import torch
from pytorch_lightning.pt_overrides.override_data_parallel import (
LightningDistributedDataParallel, LightningDataParallel)
class ModelIO(object):
def on_load_checkpoint(self, checkpoint):
@@ -43,304 +32,3 @@ class ModelIO(object):
:return:
"""
pass
class TrainerIO(object):
def __get_model(self):
is_dp_module = isinstance(self.model, (LightningDistributedDataParallel,
LightningDataParallel))
model = self.model.module if is_dp_module else self.model
return model
# --------------------
# CHECK-POINTING
# --------------------
def restore_weights(self, model):
"""
To restore weights we have two cases.
First, if we use the same experiment version, then restore the latest ckpt.
AFTER that, if we find weights from hpc checkpoint, then restore that.
:param model:
:return:
"""
# do nothing if there's not dir or callback
no_ckpt_callback = self.checkpoint_callback is None
if no_ckpt_callback or not os.path.exists(self.checkpoint_callback.filepath):
return
# restore weights if same exp version
self.restore_state_if_checkpoint_exists(model)
# if script called from hpc resubmit, load weights
self.restore_hpc_weights_if_needed(model)
def restore_state_if_checkpoint_exists(self, model):
# restore trainer state and model if there is a weight for this experiment
last_epoch = -1
last_ckpt_name = None
# find last epoch
checkpoints = os.listdir(self.checkpoint_callback.filepath)
for name in checkpoints:
# ignore hpc ckpts
if 'hpc_' in name:
continue
if '.ckpt' in name:
epoch = name.split('epoch_')[1]
epoch = int(re.sub('[^0-9]', '', epoch))
if epoch > last_epoch:
last_epoch = epoch
last_ckpt_name = name
# restore last checkpoint
if last_ckpt_name is not None:
last_ckpt_path = os.path.join(self.checkpoint_callback.filepath, last_ckpt_name)
self.restore(last_ckpt_path, self.on_gpu)
print(f'model and trainer restored from checkpoint: {last_ckpt_path}')
# --------------------
# HPC SIGNAL HANDLING
# --------------------
def register_slurm_signal_handlers(self):
# see if we're using slurm (not interactive)
on_slurm = False
try:
job_name = os.environ['SLURM_JOB_NAME']
if job_name != 'bash':
on_slurm = True
except Exception as e:
pass
if on_slurm and self.proc_rank == 0:
print('set slurm handle signals')
signal.signal(signal.SIGUSR1, self.sig_handler)
signal.signal(signal.SIGTERM, self.term_handler)
def sig_handler(self, signum, frame):
if self.proc_rank == 0:
# save weights
print('handling SIGUSR1')
self.hpc_save(self.checkpoint_callback.filepath, self.experiment)
# find job id
job_id = os.environ['SLURM_JOB_ID']
cmd = 'scontrol requeue {}'.format(job_id)
# requeue job
print('\nrequeing job {}...'.format(job_id))
result = call(cmd, shell=True)
# print result text
if result == 0:
print('requeued exp ', job_id)
else:
print('requeue failed...')
def term_handler(self, signum, frame):
# save
print("bypassing sigterm")
# --------------------
# MODEL SAVE CHECKPOINT
# --------------------
def save_checkpoint(self, filepath):
checkpoint = self.dump_checkpoint()
# do the actual save
torch.save(checkpoint, filepath)
def restore(self, checkpoint_path, on_gpu):
if on_gpu:
checkpoint = torch.load(checkpoint_path)
else:
checkpoint = torch.load(checkpoint_path, map_location=lambda storage, loc: storage)
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
# load model state
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
def dump_checkpoint(self):
checkpoint = {
'epoch': self.current_epoch,
'global_step': self.global_step
}
if self.checkpoint_callback is not None:
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
if self.early_stop_callback is not None:
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
# save optimizers
optimizer_states = []
for i, optimizer in enumerate(self.optimizers):
optimizer_states.append(optimizer.state_dict())
checkpoint['optimizer_states'] = optimizer_states
# save lr schedulers
lr_schedulers = []
for i, scheduler in enumerate(self.lr_schedulers):
lr_schedulers.append(scheduler.state_dict())
checkpoint['lr_schedulers'] = lr_schedulers
# add the state_dict from the model
model = self.__get_model()
checkpoint['state_dict'] = model.state_dict()
# give the model a chance to add a few things
model.on_save_checkpoint(checkpoint)
return checkpoint
# --------------------
# HPC IO
# --------------------
def restore_hpc_weights_if_needed(self, model):
"""
If there is a set of hpc weights, use as signal to restore model
:param model:
:return:
"""
# look for hpc weights
folderpath = self.checkpoint_callback.filepath
if os.path.exists(folderpath):
files = os.listdir(folderpath)
hpc_weight_paths = [x for x in files if 'hpc_ckpt' in x]
# if hpc weights exist restore model
if len(hpc_weight_paths) > 0:
self.hpc_load(folderpath, self.on_gpu)
def restore_training_state(self, checkpoint):
"""
Restore trainer state.
Model will get its change to update
:param checkpoint:
:return:
"""
if self.checkpoint_callback is not None:
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
if self.early_stop_callback is not None:
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
# restore the optimizers
optimizer_states = checkpoint['optimizer_states']
for optimizer, opt_state in zip(self.optimizers, optimizer_states):
optimizer.load_state_dict(opt_state)
# restore the lr schedulers
lr_schedulers = checkpoint['lr_schedulers']
for scheduler, lrs_state in zip(self.lr_schedulers, lr_schedulers):
scheduler.load_state_dict(lrs_state)
# ----------------------------------
# PRIVATE OPS
# ----------------------------------
def hpc_save(self, folderpath, experiment):
# make sure the checkpoint folder exists
os.makedirs(folderpath, exist_ok=True)
# save exp to make sure we get all the metrics
experiment.save()
# close experiment to avoid issues
experiment.close()
ckpt_number = self.max_ckpt_in_folder(folderpath) + 1
if not os.path.exists(folderpath):
os.makedirs(folderpath, exist_ok=True)
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
# give model a chance to do something on hpc_save
model = self.__get_model()
checkpoint = self.dump_checkpoint()
model.on_hpc_save(checkpoint)
# do the actual save
torch.save(checkpoint, filepath)
return filepath
def hpc_load(self, folderpath, on_gpu):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, self.max_ckpt_in_folder(folderpath))
if on_gpu:
checkpoint = torch.load(filepath)
else:
checkpoint = torch.load(filepath, map_location=lambda storage, loc: storage)
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
# load model state
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
# call model hook
model.on_hpc_load(checkpoint)
def max_ckpt_in_folder(self, path, name_key='ckpt_'):
files = os.listdir(path)
files = [x for x in files if name_key in x]
if len(files) == 0:
return 0
ckpt_vs = []
for name in files:
name = name.split(name_key)[-1]
name = re.sub('[^0-9]', '', name)
ckpt_vs.append(int(name))
return max(ckpt_vs)
def load_hparams_from_tags_csv(tags_csv):
from argparse import Namespace
import pandas as pd
tags_df = pd.read_csv(tags_csv)
dic = tags_df.to_dict(orient='records')
ns_dict = {row['key']: convert(row['value']) for row in dic}
ns = Namespace(**ns_dict)
return ns
def convert(val):
constructors = [int, float, str]
if type(val) is str:
if val.lower() == 'true':
return True
if val.lower() == 'false':
return False
for c in constructors:
try:
return c(val)
except ValueError:
pass
return val