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pytorch-lightning/pytorch_lightning/trainer/trainer.py
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Vismantas 2aba70e228 parse_gpu_ids fix (#382)
* Unit tests for num_gpu property as proxy for __parse_gpu_ids.

* Refactoring __parse_gpu_ids

* Moved the function outside the class as it is
an utility function and did not depend on class in any way.
* Added unit tests for it.

* Mocked torch.cuda.device_count function in tests.

This allows the tests to be run on machines that do not have gpus.

* Fixed the parse_gpu_ids function to handle -1 case.

Function now handles -1 the same way as it does for '-1'.

* Unit tests for root_gpu added.

Added backend as a parameter as currently depending on backend set
or not, code fails with exception in certain circumstances, before
giving a wrong answer.

* Moved __set_root_gpu function out of the class.

This function does not depend on the class and can be tested
more easily this way.
Also added unit tests for this function. They simply reuse
data for the root_gpu property.

* determine_root_gpu_device passes unit tests.

* num_gpus passes unit tests.

Also added a None test for this function.

* parse_gpu_ids tests changed to reflect desired state after refactoring.

Planning to refactor parse_gpu_ids to always return list of ints.
This will simplify code that use output of this function.

* * parse_gpu_ids always returns lists
* parse_gpu_ids checks given ids against available ids
* parse_gpu_ids raises exception for non existant ids
* parse_gpu_ids returns None when no gpus are available
* cleaned up determine_root_gpu_device
* cleaned up num_gpus property
* Updated unit tests to reflect changes in the functions

* Flake8 fixes

* Moved fixture code up before where it is used.

* Updated documentation.

* Changed tests to match the API:
* gpus=-1 or gpus='-1' should use all available gpu devices
* gpus=N
    * N=0: no gpus should be used.
    * N>0: N gpus should be used
* gpus=list of ints or a comma separated string of numbers:
    Use the gpus indicated by the list or the string.

* Fixed code to pass all the changed tests for parsing gpus param.

* Refactoring parse_gpu_ids function.

* flake8 fixes.

* Updating documentation.

* flake8 fixes.

* flake8 fixes.

* flake8 fixes

* Update trainer.py

* Update dp_mixin.py

* Make reduce_distributed_output a stand alone function.
Fix imports.
Fix flake8.

* Add comet_ml dependency to tests requirements.txt

* Revert "Make reduce_distributed_output a stand alone function. Fix imports. Fix flake8."

This reverts commit eac0338

* Merge with master.
2019-10-23 05:05:09 -04:00

459 lines
16 KiB
Python

"""
The trainer handles all the logic for running a val loop, training loop, distributing, etc.. .
"""
import os
import warnings
import torch
import torch.distributed as dist
import torch.multiprocessing as mp
import tqdm
from torch.optim.optimizer import Optimizer
from pytorch_lightning.trainer.amp_mixin import TrainerAMPMixin
from pytorch_lightning.trainer.callback_config_mixin import TrainerCallbackConfigMixin
from pytorch_lightning.trainer.data_loading_mixin import TrainerDataLoadingMixin
from pytorch_lightning.trainer.ddp_mixin import TrainerDDPMixin
from pytorch_lightning.trainer.dp_mixin import TrainerDPMixin
from pytorch_lightning.trainer.dp_mixin import (
parse_gpu_ids,
determine_root_gpu_device
)
from pytorch_lightning.trainer.evaluation_loop_mixin import TrainerEvaluationLoopMixin
from pytorch_lightning.trainer.logging_mixin import TrainerLoggingMixin
from pytorch_lightning.trainer.model_hooks_mixin import TrainerModelHooksMixin
from pytorch_lightning.trainer.train_loop_mixin import TrainerTrainLoopMixin
from pytorch_lightning.trainer.trainer_io import TrainerIOMixin
from pytorch_lightning.trainer.training_tricks_mixin import TrainerTrainingTricksMixin
from pytorch_lightning.utilities.debugging import MisconfigurationException
try:
from apex import amp
APEX_AVAILABLE = True
except ImportError:
APEX_AVAILABLE = False
class Trainer(TrainerIOMixin,
TrainerDDPMixin,
TrainerDPMixin,
TrainerDataLoadingMixin,
TrainerAMPMixin,
TrainerEvaluationLoopMixin,
TrainerTrainLoopMixin,
TrainerLoggingMixin,
TrainerTrainingTricksMixin,
TrainerCallbackConfigMixin,
TrainerModelHooksMixin):
def __init__(self,
logger=True,
checkpoint_callback=True,
early_stop_callback=True,
default_save_path=None,
gradient_clip_val=0,
gradient_clip=None, # backward compatible
process_position=0,
nb_gpu_nodes=1,
gpus=None,
log_gpu_memory=None,
show_progress_bar=True,
overfit_pct=0.0,
track_grad_norm=-1,
check_val_every_n_epoch=1,
fast_dev_run=False,
accumulate_grad_batches=1,
max_nb_epochs=1000,
min_nb_epochs=1,
train_percent_check=1.0,
val_percent_check=1.0,
test_percent_check=1.0,
val_check_interval=1.0,
log_save_interval=100,
row_log_interval=10,
add_row_log_interval=None, # backward compatible
distributed_backend=None,
use_amp=False,
print_nan_grads=False,
weights_summary='full',
weights_save_path=None,
amp_level='O1',
nb_sanity_val_steps=5):
"""
:param logger: Logger for experiment tracking
:param checkpoint_callback: Callback for checkpointing
:param early_stop_callback: Callback for early stopping
:param default_save_path: Default path for logs+weights if no logger/ckpt_callback passed
:param gradient_clip_val: int. 0 means don't clip.
:param gradient_clip: int. 0 means don't clip. Deprecated.
:param process_position: shown in the tqdm bar
:param nb_gpu_nodes: number of GPU nodes
:param gpus: int. (ie: 2 gpus) OR list to specify which GPUs [0, 1] OR '0,1'
OR '-1' / -1 to use all available gpus
:param log_gpu_memory: str. None, 'min_max', 'all'
:param show_progress_bar: Bool. If true shows tqdm bar
:param overfit_pct: float. uses this much of all datasets
:param track_grad_norm: int. -1 no tracking. Otherwise tracks that norm
:param check_val_every_n_epoch: int. check val every n train epochs
:param fast_dev_run: Bool. runs full iteration over everything to find bugs
:param accumulate_grad_batches: int. Accumulates grads every k batches
:param max_nb_epochs: int.
:param min_nb_epochs: int.
:param train_percent_check: int. How much of train set to check
:param val_percent_check: int. How much of val set to check
:param test_percent_check: int. How much of test set to check
:param val_check_interval: float/int. If float, % of tng epoch. If int, check every n batch
:param log_save_interval: int. Writes logs to disk this often
:param row_log_interval: int. How often to add logging rows
:param add_row_log_interval: int. How often to add logging rows. Deprecated.
:param distributed_backend: str. Options: 'dp', 'ddp', 'ddp2'.
:param use_amp: Bool. If true uses apex for 16bit precision
:param print_nan_grads: Bool. Prints nan gradients
:param weights_summary: str. Options: 'full', 'top', None to not print.
:param weights_save_path: Bool. Where to save weights if on cluster
:param amp_level: str. Check nvidia docs for level
:param nb_sanity_val_steps: int. How many val steps before a full train loop.
"""
# Transfer params
self.nb_gpu_nodes = nb_gpu_nodes
self.log_gpu_memory = log_gpu_memory
if not (gradient_clip is None):
# Backward compatibility
warnings.warn("gradient_clip has renamed to gradient_clip_val since v0.5.0",
DeprecationWarning)
gradient_clip_val = gradient_clip
self.gradient_clip_val = gradient_clip_val
self.check_val_every_n_epoch = check_val_every_n_epoch
self.track_grad_norm = track_grad_norm
self.on_gpu = gpus is not None and torch.cuda.is_available()
self.process_position = process_position
self.weights_summary = weights_summary
self.max_nb_epochs = max_nb_epochs
self.min_nb_epochs = min_nb_epochs
self.nb_sanity_val_steps = nb_sanity_val_steps
self.print_nan_grads = print_nan_grads
self.fast_dev_run = fast_dev_run
if self.fast_dev_run:
self.nb_sanity_val_steps = 1
self.max_nb_epochs = 1
m = '''
Running in fast_dev_run mode: will run a full train,
val loop using a single batch
'''
print(m)
# set default save path if user didn't provide one
self.default_save_path = default_save_path
if self.default_save_path is None:
self.default_save_path = os.getcwd()
# training bookeeping
self.total_batch_nb = 0
self.running_loss = []
self.avg_loss = 0
self.batch_nb = 0
self.tqdm_metrics = {}
self.callback_metrics = {}
self.nb_val_batches = 0
self.nb_training_batches = 0
self.nb_test_batches = 0
self.get_train_dataloader = None
self.get_test_dataloaders = None
self.get_val_dataloaders = None
self.is_iterable_train_dataloader = False
# training state
self.model = None
self.testing = False
self.lr_schedulers = []
self.optimizers = None
self.global_step = 0
self.current_epoch = 0
self.total_batches = 0
# configure early stop callback
# creates a default one if none passed in
self.early_stop_callback = None
self.configure_early_stopping(early_stop_callback, logger)
# configure checkpoint callback
self.checkpoint_callback = checkpoint_callback
self.weights_save_path = weights_save_path
# accumulated grads
self.configure_accumulated_gradients(accumulate_grad_batches)
# allow int, string and gpu list
self.data_parallel_device_ids = parse_gpu_ids(gpus)
self.root_gpu = determine_root_gpu_device(self.data_parallel_device_ids)
# distributed backend choice
self.use_ddp = False
self.use_ddp2 = False
self.use_dp = False
self.single_gpu = False
self.distributed_backend = distributed_backend
self.set_distributed_mode(distributed_backend, nb_gpu_nodes)
# init flags for SLURM+ddp to work
self.proc_rank = 0
self.world_size = 1
self.node_rank = 0
self.configure_slurm_ddp(nb_gpu_nodes)
# nvidia setup
self.set_nvidia_flags(self.is_slurm_managing_tasks, self.data_parallel_device_ids)
# can't init progress bar here because starting a new process
# means the progress_bar won't survive pickling
self.show_progress_bar = show_progress_bar
# logging
self.log_save_interval = log_save_interval
self.val_check_interval = val_check_interval
if not (add_row_log_interval is None):
# backward compatibility
warnings.warn("gradient_clip has renamed to gradient_clip_val since v0.5.0",
DeprecationWarning)
row_log_interval = add_row_log_interval
self.row_log_interval = row_log_interval
# how much of the data to use
self.determine_data_use_amount(train_percent_check, val_percent_check,
test_percent_check, overfit_pct)
# 16 bit mixed precision training using apex
self.amp_level = amp_level
self.init_amp(use_amp)
@property
def slurm_job_id(self):
try:
job_id = os.environ['SLURM_JOB_ID']
job_id = int(job_id)
except Exception as e:
job_id = None
return job_id
def __parse_gpu_ids(self, gpus):
"""
:param gpus: Int, string or list of ids
:return:
"""
# if gpus = -1 then use all available devices
# otherwise, split the string using commas
if gpus is not None:
if type(gpus) is list:
gpus = gpus
elif type(gpus) is str:
if gpus == '-1':
gpus = list(range(0, torch.cuda.device_count()))
else:
gpus = [int(x.strip()) for x in gpus.split(',')]
elif type(gpus) is int:
gpus = gpus
else:
raise Exception('gpus has to be a string, int or list of ints')
return gpus
def __set_root_gpu(self, gpus):
if gpus is None:
return None
# set root gpu
root_gpu = 0
if type(gpus) is list:
root_gpu = gpus[0]
return root_gpu
@property
def num_gpus(self):
gpus = self.data_parallel_device_ids
if gpus is None:
return 0
else:
return len(gpus)
@property
def data_parallel(self):
return self.use_dp or self.use_ddp or self.use_ddp2
@property
def training_tqdm_dict(self):
"""
Read-only for tqdm metrics
:return:
"""
tqdm_dict = {
'loss': '{0:.3f}'.format(self.avg_loss),
'epoch': '{}'.format(self.current_epoch),
'batch_nb': '{}'.format(self.batch_nb),
}
if self.logger is not None and self.logger.version is not None:
tqdm_dict['v_nb'] = self.logger.version
tqdm_dict.update(self.tqdm_metrics)
if self.on_gpu:
tqdm_dict['gpu'] = '{}'.format(torch.cuda.current_device())
return tqdm_dict
@property
def tng_tqdm_dic(self):
"""
* Deprecated in v0.5.0. use training_tqdm_dict instead. *
:return:
"""
warnings.warn("tng_tqdm_dict has renamed to training_tqdm_dict since v0.5.0",
DeprecationWarning)
return self.training_tqdm_dict
# -----------------------------
# MODEL TRAINING
# -----------------------------
def fit(self, model):
# when using multi-node or DDP within a node start each module in a separate process
if self.use_ddp2:
task = int(os.environ['SLURM_LOCALID'])
self.ddp_train(task, model)
elif self.use_ddp:
if self.is_slurm_managing_tasks:
task = int(os.environ['SLURM_LOCALID'])
self.ddp_train(task, model)
else:
mp.spawn(self.ddp_train, nprocs=self.num_gpus, args=(model,))
# 1 gpu or dp option triggers training using DP module
# easier to avoid NCCL issues
elif self.use_dp:
self.dp_train(model)
elif self.single_gpu:
self.single_gpu_train(model)
# ON CPU
else:
# run through amp wrapper
if self.use_amp:
raise MisconfigurationException('amp + cpu is not supported.'
' Please use a GPU option')
# CHOOSE OPTIMIZER
# allow for lr schedulers as well
self.optimizers, self.lr_schedulers = self.init_optimizers(model.configure_optimizers())
self.run_pretrain_routine(model)
# return 1 when finished
# used for testing or when we need to know that training succeeded
return 1
def init_optimizers(self, optimizers):
# single optimizer
if isinstance(optimizers, Optimizer):
return [optimizers], []
# two lists
elif len(optimizers) == 2 and isinstance(optimizers[0], list):
optimizers, lr_schedulers = optimizers
return optimizers, lr_schedulers
# single list or tuple
elif isinstance(optimizers, list) or isinstance(optimizers, tuple):
return optimizers, []
def run_pretrain_routine(self, model):
"""
Sanity check a few things before starting actual training
:param model:
:return:
"""
ref_model = model
if self.data_parallel:
ref_model = model.module
# give model convenience properties
ref_model.trainer = self
# set local properties on the model
self.copy_trainer_model_properties(ref_model)
# link up experiment object
if self.logger is not None:
ref_model.logger = self.logger
# save exp to get started
if hasattr(ref_model, "hparams"):
self.logger.log_hyperparams(ref_model.hparams)
self.logger.save()
if self.use_ddp or self.use_ddp2:
dist.barrier()
# set up checkpoint callback
self.configure_checkpoint_callback()
# register auto-resubmit when on SLURM
self.register_slurm_signal_handlers()
# transfer data loaders from model
self.get_dataloaders(ref_model)
# init training constants
self.layout_bookeeping()
# print model summary
if self.proc_rank == 0 and self.weights_summary is not None:
if self.weights_summary in ['full', 'top']:
ref_model.summarize(mode=self.weights_summary)
else:
m = "weights_summary can be None, 'full' or 'top'"
raise MisconfigurationException(m)
# track model now.
# if cluster resets state, the model will update with the saved weights
self.model = model
# restore training and model before hpc call
self.restore_weights(model)
# progress bar init
if self.show_progress_bar:
self.progress_bar = tqdm.tqdm(0, position=self.process_position)
# when testing requested only run test and return
if self.testing:
self.run_evaluation(test=True)
return
# run tiny validation (if validation defined)
# to make sure program won't crash during val
ref_model.on_sanity_check_start()
if self.get_val_dataloaders() is not None and self.nb_sanity_val_steps > 0:
# reset progress_bar limit for sanity check
if self.show_progress_bar:
self.progress_bar.reset(self.nb_sanity_val_steps)
self.evaluate(model, self.get_val_dataloaders(), self.nb_sanity_val_steps, self.testing)
# CORE TRAINING LOOP
self.train()
def test(self, model=None):
self.testing = True
if model is not None:
self.fit(model)
else:
self.run_evaluation(test=True)