Added sections to gallery of examples

Modified travis_script.sh to account for the new structure of the gallery

Added README.txt files in directories of gallery examples

Fixed references to gallery images in user guide pages

Fixed broken links
This commit is contained in:
emmanuelle
2015-12-19 15:28:15 +01:00
parent 827e4b11c9
commit 55f5103dd8
84 changed files with 45 additions and 31 deletions
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"""
====================
Finding local maxima
====================
The ``peak_local_max`` function returns the coordinates of local peaks (maxima)
in an image. A maximum filter is used for finding local maxima. This operation
dilates the original image and merges neighboring local maxima closer than the
size of the dilation. Locations where the original image is equal to the
dilated image are returned as local maxima.
"""
from scipy import ndimage as ndi
import matplotlib.pyplot as plt
from skimage.feature import peak_local_max
from skimage import data, img_as_float
im = img_as_float(data.coins())
# image_max is the dilation of im with a 20*20 structuring element
# It is used within peak_local_max function
image_max = ndi.maximum_filter(im, size=20, mode='constant')
# Comparison between image_max and im to find the coordinates of local maxima
coordinates = peak_local_max(im, min_distance=20)
# display results
fig, ax = plt.subplots(1, 3, figsize=(8, 3), sharex=True, sharey=True, subplot_kw={'adjustable':'box-forced'})
ax1, ax2, ax3 = ax.ravel()
ax1.imshow(im, cmap=plt.cm.gray)
ax1.axis('off')
ax1.set_title('Original')
ax2.imshow(image_max, cmap=plt.cm.gray)
ax2.axis('off')
ax2.set_title('Maximum filter')
ax3.imshow(im, cmap=plt.cm.gray)
ax3.autoscale(False)
ax3.plot(coordinates[:, 1], coordinates[:, 0], 'r.')
ax3.axis('off')
ax3.set_title('Peak local max')
fig.subplots_adjust(wspace=0.02, hspace=0.02, top=0.9,
bottom=0.02, left=0.02, right=0.98)
plt.show()