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Author SHA1 Message Date
Josh Warner (Mac) da5a2a8221 BUG - Now parsing all unique labels != 0 properly, and set threshold_rel=0 in is_local_maximum() wrapper. 2012-11-20 01:11:31 -06:00
Josh Warner (Mac) 233b368195 BUG - Fixed a bug where the image was not properly masked for each unique label. 2012-11-20 00:45:01 -06:00
Josh Warner (Mac) 33c9514062 BUG - Fixed a bug where, when indices = False, output was not Boolean. 2012-11-20 00:36:12 -06:00
Josh Warner (Mac) 226eaaff92 FEAT - Unified peak finder backend 
Detailed changelist:
  * Fully documented new API for peak_local_max()
  * Removed commented-out old code for is_local_maximum()
  * Added "See also" and "Notes" to is_local_maximum() redirecting to peak_local_max()
 2012-11-20 00:12:47 -06:00
Josh Warner (Mac) 63b5c5a4a0 FEAT - combined API from is_local_maximum() into peak_local_max() 
is_local_maximum() is a wrapper function for peak_local_max()
is_local_maximum() runs much faster (~20% of prior runtime, nearly = to peak_local_max())
All tests in .feature and .morphology subpackages pass as written with these changes.

Todo:
  * Fully document API
  * remove commented-out old algorithm in is_local_maximum()
  * add new tests for full coverage of new, more complex peak_local_max()
 2012-11-19 23:38:58 -06:00
Johannes Schönberger a7527adf31 Add example for hough_peaks function 2012-11-17 22:27:11 +01:00
Tony S Yu 13c61b9694 Merge pull request #361 from ahojnnes/hough-peaks 
Add hough transform peak detection
 2012-11-17 07:30:08 -08:00
Tony S Yu 9d653fec78 BUG: Clean up imports 2012-11-15 23:53:47 -05:00
Tony S Yu 0d411e21dc STY: Refactor parts of LineTool to CanvasToolBase 2012-11-15 22:04:02 -05:00
Tony S Yu d219a76f58 BUG: Fix blitting behavior in canvastools 2012-11-15 21:56:51 -05:00
Johannes Schönberger 2df0cdb443 Merge pull request #374 from tonysyu/add-rank-to-bentoinfo 
Add rank extensions to bento.info
 2012-11-15 00:42:53 -08:00
Tony S Yu 5be5813070 STY: Reuse ThickLineTool in LineProfile 2012-11-15 00:16:19 -05:00
Tony S Yu 2ff3e78c52 BUG: Move callback connection to parent class 2012-11-15 00:16:19 -05:00
Tony S Yu 4f6f25efe9 ENH: Add canvastools subpckages with base class and line tools 2012-11-15 00:16:19 -05:00
Tony S Yu d6a0b08859 ENH: Add filter.rank extensions to bento.info 2012-11-14 20:46:47 -05:00
Tony S Yu 2a8466a549 ENH: Compare full paths of cython extensions. 
If setup.py defined an extension in a subdirectory, the extension name in bento.info didn't match the one found in setup.py. Comparing the full extension path fixes the issue.
 2012-11-14 20:43:52 -05:00
Tony S Yu 22a73fc0cb BUG: Adapt to whitespace in text search 2012-11-14 20:08:16 -05:00
Johannes Schönberger 80a9a5aba5 Apply numpy reference style to rank filter descriptions 2012-11-14 08:33:27 +01:00
Johannes Schönberger 2403bee27c Merge pull request #348 from odebeir/rank_filters 
Rank filters
 2012-11-13 23:30:12 -08:00
Olivier Debeir 70f2b67ef7 fix: ref and test_otsu doc 2012-11-14 08:00:59 +01:00
Olivier Debeir 698d6ae13f fix:< Py_ssize_t > 0 and & pop 2012-11-13 17:07:21 +01:00
Olivier Debeir 411d4686d5 fix:wrap lines in tests 2012-11-13 17:02:08 +01:00
Olivier Debeir f133158792 autopep8 for plot_* and rank sources 2012-11-13 09:37:58 +01:00
Olivier Debeir 114f3a84f3 Merge pull request #2 from ahojnnes/rank-filters 2012-11-12 22:25:27 -08:00
Johannes Schönberger af55d712ee PEP8 fixes for long rank filter example 2012-11-12 20:10:56 +01:00
Johannes Schönberger 4a0b22aff5 Use common spelling for greylevel 2012-11-12 20:07:02 +01:00
Johannes Schönberger d0d5df0d68 Improve description of long rank filter example 2012-11-12 20:04:42 +01:00
Johannes Schönberger eaf48a71e9 Use numpy reference style 2012-11-12 19:31:06 +01:00
Johannes Schönberger a376a07c3b PEP8 fixes in doc string examples 2012-11-12 19:29:00 +01:00
Johannes Schönberger fce2ae3f5f Fix spelling of X-bit 2012-11-12 19:25:46 +01:00
Johannes Schönberger f724b97f90 Fix typos and spelling of readme 2012-11-12 19:24:02 +01:00
Olivier Debeir 542ec6fdc5 fix: local otsu doc 2012-11-12 14:57:08 +01:00
Olivier Debeir da391089cb add: local Otsu synthetic example 2012-11-12 14:48:38 +01:00
Olivier Debeir db2e066f4c add: test otsu 2012-11-12 14:40:49 +01:00
Olivier Debeir add437a9f2 add: test entropy 8- & 16-bit 2012-11-12 10:39:12 +01:00
Olivier Debeir c9f1b67c7b fix: check pop==0 for some kernels 2012-11-12 10:05:52 +01:00
Olivier Debeir fd82ac9959 add new tests 2012-11-12 09:54:10 +01:00
Olivier Debeir a09ec78977 remove local demo from git 2012-11-12 09:34:33 +01:00
Olivier Debeir 47b0a72b32 fix: plt.show() removed in doc 2012-11-12 09:02:40 +01:00
odebeir 08b748c379 local Otsu returns now the threshold values 2012-11-11 14:39:09 +01:00
Olivier Debeir c3fc8c636b Merge pull request #1 from ahojnnes/rank-filters 
Rank filters
 2012-11-10 08:50:32 -08:00
Johannes Schönberger 8fea5d15d1 Change data type of pop variable to float 2012-11-10 13:49:52 +01:00
Johannes Schönberger f5ad204aca Use single file for test cases and rename file 2012-11-10 11:23:43 +01:00
Johannes Schönberger c9f95db67f Fix, improve and extend test cases 2012-11-10 11:21:55 +01:00
Johannes Schönberger 8c55640d60 Do not ignore exceptions in core functions 2012-11-10 11:20:56 +01:00
Johannes Schönberger c00fedde6c Fix, improve and extend histogram test cases 2012-11-10 09:43:15 +01:00
Johannes Schönberger 7ea3a754e0 Remove duplicate contiguous conversion 2012-11-10 08:59:48 +01:00
Johannes Schönberger 2bb139fb03 Wrap lines 2012-11-10 08:39:27 +01:00
Johannes Schönberger 804b426787 Clean Readme 2012-11-10 08:35:23 +01:00
Johannes Schönberger 045eb88e9f Change type of pop variable from float to Py_ssize_t 2012-11-10 08:31:20 +01:00