e9c5f666ae
Use educated guesses for presence of color channels in SLIC
2013-07-02 13:22:13 +02:00
e757b9ae06
Rename slic.py to avoid name conflicts
2013-07-02 13:22:13 +02:00
99f905bc54
Always convert image to float in [0, 1]
2013-07-02 13:22:13 +02:00
5c4d0218ce
bug fix: 3d test working
2013-07-02 13:22:13 +02:00
215439b43c
Add 3D slic tests (gray not working yet)
2013-07-02 13:22:13 +02:00
57cc86d7c8
Bug fix: remove unnecessary __get__ in test_slic
2013-07-02 13:22:13 +02:00
e9aa78b937
Bug fix: don't add singleton dimension to 3D gray images
2013-07-02 13:22:13 +02:00
8e4ab32ed9
Bug fixes: concatenation order and shape assignments
2013-07-02 13:22:13 +02:00
6dc8e6300b
Separate inner loop of SLIC computation
2013-07-02 13:22:12 +02:00
620210025f
Modify SLIC to allow uneven step sizes
2013-07-02 13:22:12 +02:00
a2e32cc90c
Add initial 3D modifications (not working)
2013-07-02 13:21:17 +02:00
a48de8dea9
add optional + default in pyx docstring
2013-05-29 20:18:19 +02:00
69eafa95df
Add __all__ to segmentation package
2013-04-28 23:20:00 +02:00
81479ca591
BUG: Fix integer type in Felzenwalb cython.
2013-04-22 17:27:01 +02:00
e3c3a69560
add assertion checks to ensure data shape is unchanged
2013-04-14 20:16:18 -05:00
8e0eb4a2b1
fix: remove unnecessary forced copy
2013-04-14 20:15:19 -05:00
28c7d8afd3
Use force_copy argument of img_as_float
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Also three PEP8 fixes
2013-04-12 10:02:33 -05:00
f1ef7d5da2
PEP8 fixes; remove unneeded pyamg import; add data shape check
2013-04-11 14:02:10 -05:00
1edbf3e6f4
fix to preserve input image shape upon executing random_walker
2013-04-11 11:49:10 -05:00
dda83fdb55
Fix ValueError: Buffer dtype mismatch on win-amd64
2013-03-04 17:30:40 -08:00
17e7ba3de7
DOC: Fix Sphinx errors.
2013-03-02 17:22:10 -06:00
62d83ad42c
Globally change np to cnp if cimported
2013-02-24 14:14:14 +01:00
7e578b5dec
Fix index type error in SLIC function
2013-02-22 17:05:39 +01:00
983cb76319
Remove print statement
2013-02-22 17:05:39 +01:00
614023b941
Replace ssize_t with Py_ssize_t globally
2013-02-22 17:05:38 +01:00
9f55fa2112
Change type to ssize_t for all index and size variables
2013-02-22 17:05:10 +01:00
c9f72e93d6
Change type to ssize_t for all index and size variables
2013-02-22 17:05:10 +01:00
18aef47100
Merge pull request #395 from jni/jni-slic-bw
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ENH: Allow grayscale input images to SLIC segmentation.
2012-12-22 11:42:19 -08:00
7c0424fd83
Merge pull request #378 from sergeyk/master
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Fixed RGB<->XYZ conversion (was incorrect before).
2012-12-18 07:57:06 -08:00
08da07b1cd
Merge pull request #377 from jni/jni-segmentation-join
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Add functions to join and relabel segmentations
2012-12-17 06:44:47 -08:00
35e8ad2ccc
Allow grayscale input images to SLIC segmentation
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There is no reason for SLIC to be restricted to colour/RGB images. I
have added a few lines that allow single-channel input.
2012-12-17 16:45:23 +11:00
2ebac38c4d
Rename ar to label_field for clarity
2012-12-17 16:37:41 +11:00
e3951a2a78
Rename ar_relabeled to relabeled for simplicity
2012-12-12 14:31:05 +11:00
33c58ad854
Fix some doc string formatting issues of random walker
2012-12-09 23:19:42 +01:00
a410f1c47e
UmfPack warning is now only raised if random walker is explicitly called
2012-12-09 23:17:06 +01:00
bf28a38f6e
ENH: Make black the default boundary color for mark_boundaries.
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This improves visibility in light-colored image regions. Note also that the new behavior matches the behavior from the 0.7 release.
2012-12-02 16:02:27 -05:00
b5d1e9f209
FIX quickshift nosetest with different xyz color conversion
2012-11-30 15:36:01 +01:00
b906082034
Add testing functions for join and relabel
2012-11-28 12:48:13 +11:00
dc377970f5
Add functions to join and relabel segmentations
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The join of two segmentations is the segmentation in which two voxels
are in the same segment if and only if they are in the same segment in
both input segmentations.
2012-11-28 12:22:14 +11:00
b4b090271d
complete singularization of scikit-image
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I've updated references in the code and documentation to the new name.
2012-10-08 16:29:55 -07:00
ad53159d60
STY: Rename highlight_boundaries to mark_boundaries
2012-10-07 19:23:38 -04:00
694ac11f93
STY: Rename visualize_boundaries to highlight_boundaries
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Add @deprecated decorator to ease the transition.
2012-10-07 15:43:28 -04:00
500b1c507c
ENH: Add grayscale support and color adjustment to visualize_boundaries
2012-10-07 15:33:03 -04:00
e9790800d3
Fix ValueError: Buffer dtype mismatch on 64 bit platforms
2012-09-29 15:36:55 -07:00
6c59e04714
MISC remove unused imports, some pep8 corrections.
2012-09-27 20:01:45 +01:00
03a701c831
Merge pull request #323 from emmanuelle/bug_rw
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BUG: Correct a newly appeared bug in the random walker.
2012-09-19 17:53:25 -07:00
6635cf16db
[BUG] Corrected a bug in the random walker that appeared
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* when returning the full probability instead of the segmentation
* for three or more labels (two was OK)
2012-09-18 19:56:52 +02:00
9cc77d1138
Merge pull request #317 from tonysyu/testing-compatibility
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Add `assert_greater` compatibility function.
2012-09-17 22:34:26 -07:00
ee2092c6fa
Documentation fix for labels input in random_walker.
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This fix was needed because `labels` claimed it should be "of same
shape as `data`", but this is no longer always the case. When
multichannel=True, `labels` should be shaped like a SINGLE channel
of `data`, i.e. without the final dimension denoting channels.
2012-09-17 16:38:59 -05:00
f2d5b109e9
Add assert_greater compatibility function.
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Fix tests to work with nose < 1.1.3. Compatibility functions borrowed from scikit-learn.
2012-09-13 22:17:24 -04:00
Juan Nunez-Iglesias