ecdfd518c6
Add test case for number of labels
2013-04-09 22:54:57 +02:00
644ab324dd
Added test for ball and octahedton selems.
...
Note that only the center slice (in each dimension is tested)
since there is no reference data available for these selems.
I did visualize the 3D shapes to see whether they look right.
2013-03-28 10:03:02 +01:00
b306f9b70f
Revert remove_small_objects to raise TypeError
2013-03-10 19:23:04 +11:00
dae9b7adfd
STY: Minor cleanup.
2013-03-04 11:30:19 +02:00
6b9ecd80b9
Add raise and labeled image tests
2013-03-04 01:32:05 +11:00
b07f7fd9bd
Rename function to remove_small_objects
2013-03-04 01:32:05 +11:00
5222fb5ff7
Add tests for remove_small_connected_components
2013-03-04 01:32:05 +11:00
6c59e04714
MISC remove unused imports, some pep8 corrections.
2012-09-27 20:01:45 +01:00
56b1476789
Add test case for non-square images
2012-09-11 20:27:18 +02:00
f478b6a397
Fix bug in binary dilation and test case
2012-09-11 20:11:55 +02:00
b1d99be735
Fix bug in grey erosion and dilation
2012-09-11 09:09:10 +02:00
373b3293ee
Use numpy testing functions
2012-09-02 13:28:07 +02:00
de47332bd2
Add fast morphological operations for binary images
2012-09-02 13:25:52 +02:00
0644026250
Fixed two tests that were failing because of draw imports
2012-08-27 12:04:30 +02:00
7d8bc48378
ENH: Change assert statement for better error output
2012-08-26 16:36:28 -04:00
544fec7560
Merge pull request #215 from tonysyu/morph-reconstruction
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ENH: Add morphological reconstruction.
2012-08-25 07:42:36 -07:00
d7d1faec46
Fix bug in skeletonize LUT
2012-08-20 21:56:10 +01:00
b614b34eab
ENH: Add test of reconstruction by erosion.
2012-08-18 23:20:49 -04:00
e4dd658daf
STY: PEP8 and other clean up.
2012-08-09 00:23:58 -04:00
25efae8269
Add morphological reconstruction with test and example.
2012-07-13 00:53:51 -04:00
46e959a9d9
COSMIT some manual pep8, removed unused imports, removed unused variables and fixed a bug in a ValueError statement.
2012-06-29 11:27:23 +02:00
f7c56202d0
COSMIT no spaces around power `**`. Fun: https://gist.github.com/1671995
2012-06-29 11:27:23 +02:00
f7b3d8062c
COSMIT pep8
2012-06-29 11:27:23 +02:00
944f79cdce
BUG: Fix background labelling for case when (0, 0) belongs to the background.
2012-06-12 09:51:16 -07:00
dc6c3d0222
Rename test module to match module.
2012-05-03 17:45:36 -04:00
0edefedc50
Replace import * with import grey.
2012-05-03 17:35:11 -04:00
8fb597b141
Fix dtype compatibility for functions in morphology.grey
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Cast input images using ``img_as_ubyte``. Note, tests don't currently pass for integer arrays (test skipped).
2012-05-03 16:22:00 -04:00
284753a7a4
Make test module runnable.
2012-05-03 16:21:59 -04:00
cfa9bbfc40
Rename greyscale morphology functions.
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Remove "greyscale" prefix on functions in ``morphology.grey``. To avoid confusion (and name clashes), ``greyscale_open`` and ``greyscale_close`` were renamed ``opening`` and ``closing`` (instead of ``open`` and ``close``). As a bonus, these names match scipy.ndimage.
2012-05-03 16:21:59 -04:00
29a2fc3c22
Remove unused imports
2012-05-03 16:21:59 -04:00
c78ea107aa
ENH: Add background labelling.
2011-12-22 04:47:24 -08:00
b83ece8b05
ENH: Allow choice between 4 and 8 neighbor mode. Improve documentation.
2011-12-16 23:47:32 -08:00
3495767358
ENH: Rename convex_hull to convex_hull_image to allow later clean API addition of convex_hull with labels.
2011-11-02 09:38:54 -07:00
33469fa69e
BUG: Allow test suite to pass with scipy < 0.9.
2011-10-28 14:56:41 -07:00
2191d29611
ENH: In test, do not compute hull twice.
2011-10-28 14:36:05 -07:00
b34b9d8ddd
ENH: Only perform convex hull on select candidate pixels. Gets us a factor 30 speedup.
2011-10-26 23:17:00 -07:00
74f7e01e42
ENH: Improve convex_hull execution speed.
2011-10-26 19:55:46 -07:00
b5ad567a68
ENH: Add binary convex hull computation.
2011-10-26 17:43:30 -07:00
736802bad4
Medial axis transform (skeletonization) from cell profiler
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* medial_axis function in morphology.skeletonize
* plot_medial_axis.py example for the gallery
Compared to the skeletonize algorithm in morphology.skeletonize,
medial_axis is faster because it processes all pixel in one pass.
However, the resulting skeleton has more branches, that may be unwanted
depending on the application.
2011-10-24 23:22:58 +02:00
0f31034a46
First integration of cell profiler medial axis transform
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(skeletonization in cell profiler)
2011-10-24 23:22:58 +02:00
5ec4fdec09
PKG: Import skimage instead of scikits.image in changes made since rename.
2011-10-23 22:55:55 -07:00
91d9949282
PKG: Move remaining files that changed since skimage rename.
2011-10-23 22:34:28 -07:00
114cf44c77
Renamed scikits.image to skimage
2011-10-18 21:12:27 +02:00
Johannes Schönberger