Commit Graph

30 Commits

Author SHA1 Message Date
Johannes Schönberger 3b3bb01270 Fix denoise tests 2014-08-08 08:27:57 -04:00
Steven Silvester e3b84edf1b Fix python 2.6 restoration/unwrap error 2014-08-02 10:30:32 -05:00
blink1073 b6dcf3c336 Update Travis build to use Anaconda.
Update Travis build to use Anaconda

Travis updates and fixes

More travis fixes

Another travis attempt

Revert changes

Use PIL and Pillow

Refactor travis into 4 different builds

Fix activation error

Remove explicit mpl in build_versions.py

Make matplotlib an explicit requirement

Rearrange travis

Make pillow a hard requirement

Try again to make Pillow optional

Fix bash syntax error

Fix bash syntax error

Bump required cython version

More rearrangments

Remove mpl from build_versions, rearrange travis

Fix version check

Make matplotlib explicit again

Conda install into test env

Check for proper install

Allow tests to skip if networkx is not available

Allow tests to skip if networkx is not available

Try swapping pillow for matplotlib

Allow tests to pass when matplotlib is not present

Remove matplotlib from build_versions

Print PIL version

Get pillow from PIP

Allow tests to skip if matplotlib is not present.

Allow tests to skip if networkx is not present.

travis fix

Remove unused mpl import that caused test error

Use nose-cov and do not run doctests without optional libs

Bump required numpy version and fix nose calls

Make overlay test repeatable

bump numpy version again

Move low-end numpy to python 2.7

Play with minimum versions

Add version requirements and use functions

Add version requirements and use functions

Allow require to skip a test

More implementation of require decorator

Update require decorator and clean up tests

Only use requires decorator when needed

Fix python3 error in version_requirements

Fix build errors

Fix handling of require with tests

More fixes for require handler

Use latest miniconda

Fix more build errors

Fix another dict comprehension and travis file.

Fix missing imports

Fix dictionary again

Fix import warning

Fix last failing test on 2.6

Skip doc examples on python2.6

Do not run doctests on python2.6

Fix typo in travis.yml

Make numpy-1.6 compatibility changes

Use numpy-1.6 in travis python2.6

Add tests for version requirements

Fix line noise in PR

Add additional io plugins

Fix simpleitk test.

Fix python 3 error in freeimage_plugin.

Install imread in Travis.

Put matplotlib settings in XDG recommended directory

Fix formatting in travis yml

Fix formatting in travis yml

Make sure to close PIL file atexit

Fix name of apt package xcftools

Fix pil fp closing

Fix matplotlibrc creation

Only download SimpleITK on py2x, run coverage on py27

Fix travis yml syntax error

Run coveralls on py2.7

Install SimpleITK on py3.3 and run coverage on py3.3

Make simpleitk install quiet

Use standard nose and clean up incantation

Fix travis yml syntax error

Put in miniconda workout for libc error.

Fix imread plugin.

Fix travis syntax

Remove unused import

Remove miniconda libpng in favor of system png

Fix imread install and move libm removal to after optional pkg install.

Fix png header copy in travis yml

Another attempt to use png headers

Debug freeimage

Add jpeg library for freeimage and debug imread.

More debug for imread and freeimage

More freeimage and imread debugging

More debugging

Use correct paths for test env

Make sure imread is tied to libpng15

Add a TODO note for simpleitk test causing error.

Fix typo in yml

Cleanup and add more comments to travis yml

Update comment

Try and add 3.2 support.

Docstring formatting

Add more travis comments.

Try numpy 1.6 on python 2.7

Fix travis syntax error

Rename CONDA to ENV for clarity

Alias python on python 3.2

Use python 3.2 as the system python

Clean up libfreeimage install

Fix order on py3.2 pre_install

Move old numpy back to py26

Use the appropriate python calls.

Debug 3.2 build.

Update comment

Fix syntax error

Another fix for syntax error.

Install scipy after downloading import tools

More debugging for py32

Do not install conda on py3.2 (duh)

Fix typo in travis yml

Fix py32 qt install, separate pyfits and imread to find error

Fix syntax error and front-load option lib check for debug

pyfits is not supported in py3.2, try imread now

imread is also not supported on py3.2

install imread before pyfits to show relationship with libs

Make pip builds quiet

Minor formatting to retrigger build

Allow simpleitk to fail to download without breaking the build

Use travis_retry for SimpleITK

See what breaks when we keep libm in

Now remove libm again
2014-08-02 06:47:09 -05:00
blink1073 5677dafe41 Move away from random.random in favor of random.rand 2014-07-19 18:18:23 -05:00
Johannes Schönberger e8ab5559d5 Test invalid input for unwrap_phase 2014-05-10 10:47:52 -04:00
Johannes Schönberger ef63523ab0 Move denoise functions to restoration submodule 2014-03-13 19:39:54 -04:00
Johannes Schönberger 107f1d607c Move phase unwrapping algorithms to restoration submodule 2014-03-13 18:50:39 -04:00
François Orieux 9eb878e440 Remove credit field (and others). Pep8 small fix. 2013-12-14 01:31:00 +01:00
François Orieux e0bb826e9e Update test file because of the new clip param default to True 2013-12-10 23:30:46 +01:00
François Orieux cf41cf4521 Remove own licence for skimage licence 2013-12-10 22:45:16 +01:00
François Orieux 44f27e5460 Docstring fix. Clip parameter addition. 2013-12-10 22:45:16 +01:00
François Orieux 15a96d5300 Fix python3 test and real values image. 2013-12-10 22:45:16 +01:00
François Orieux bda9b4fb3c Fix travis test 2013-12-10 22:45:16 +01:00
François Orieux b0b0b112db Add tests, coverage improvement. 2013-12-10 22:45:16 +01:00
François Orieux 4e2a5a9644 Better docstring. Better test coverage. 2013-12-10 22:45:16 +01:00
François Orieux 587ec48874 Better handle of non real case. Some docstring fix. 2013-12-10 22:45:15 +01:00
François Orieux 0fdb5b2e0a Change example scaling. Fix ref in doc. 2013-12-10 22:45:15 +01:00
François Orieux 9849d9d419 Add doctest to uft. 2013-12-10 22:45:15 +01:00
François Orieux 29f953d6a9 Fix iscomplex to iscomplexobj. Replace circshift with numpy roll. 2013-12-10 22:45:15 +01:00
François Orieux e67bdd3471 PR fixs. 2013-12-10 22:45:15 +01:00
François Orieux 8206695afd Remove import numpy from docstring doctest 2013-12-10 22:45:15 +01:00
François Orieux 6c0c4350b1 Docstring convention about "Input image". 2013-12-10 22:45:15 +01:00
François Orieux 5b2985976d Blank line remove 2013-12-10 22:45:15 +01:00
François Orieux 43cfff9328 PR review.
Copyrigth, dtype check and typo.
2013-12-10 22:45:15 +01:00
François Orieux cb687d1ac9 Small cleanup, keywords changes. 2013-12-10 22:45:15 +01:00
François Orieux fe684b845d Fix circshift. Rename wiener.py to deconvolution (no API change). 2013-12-10 22:45:15 +01:00
François Orieux 2c170ca0b1 Fix doctest 2013-12-10 22:45:15 +01:00
François Orieux 66372a2405 Typo and doc fixs. 2013-12-10 22:45:15 +01:00
François Orieux a3b360f84a Fix test_restoration.py rename. 2013-12-10 22:45:14 +01:00
François Orieux def48f1909 Rename deconvolution to restoration 2013-12-10 22:45:14 +01:00