a315ae718d
Add Yen threshold method
2013-09-07 18:48:46 +03:00
6f5f6a0a7a
DOC: Further improvements to naming conventions.
2013-09-07 00:39:04 -05:00
34b1b7b414
Fix errors in relabel_from_one docs; PEP8
2013-09-07 00:51:21 +10:00
22ca0ae457
Fix indentation
2013-09-03 20:31:24 +02:00
8ed56abb42
Merge pull request #469 from JDWarner/add_marching_cubes
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3D Marching Cubes
2013-09-03 04:55:29 -07:00
8137c41e22
Add optional description to parameters
2013-09-03 10:48:53 +02:00
770e28d2bb
Rename clusters to segments
2013-09-03 10:47:49 +02:00
d9e64b43e6
Make image C-contiguous
2013-09-03 08:40:18 +02:00
d2bc02c10b
Credit myself for Marching Cubes
2013-09-02 20:23:00 -05:00
abc7a16a80
STYLE: Use np.array instead of np.r_ and import Poly3DCollection
2013-09-02 15:31:51 -05:00
b5806d18ba
Merge pull request #722 from stefanv/shape_step
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Add skip parameter to `view_as_windows`.
2013-09-02 00:10:32 -07:00
1174d6fbc5
FIX: Errors in unit tests
2013-09-01 22:05:39 -05:00
cd306bad57
FIX: Add _marching_cubes_cy.pyx to bento.info
2013-09-01 21:53:01 -05:00
50d73fdd62
TEST: Add test suite for draw3d (ellipsoid/ellipsoid_stats)
2013-09-01 21:31:53 -05:00
c678fa55f4
DOC: Add concise marching cubes example to gallery using Matplotlib
2013-09-01 20:52:06 -05:00
14a0685838
MAINT: Refactor ellipsoid generator into skimage.draw
2013-09-01 20:51:20 -05:00
d0d9fee36e
DOC: Minor documentation formatting fixes in marching cubes
2013-09-01 20:49:58 -05:00
b0d3b92e74
Add skip parameter to view_as_windows.
2013-09-01 23:50:54 +02:00
80ed875147
Add missing rgb2lab import
2013-09-01 17:12:10 +02:00
a6d1b10e25
Use absolute imports
2013-09-01 16:53:05 +02:00
eeddd9e35f
Revert multichannel magic and improve parameter docs
2013-09-01 16:46:01 +02:00
e5eea8e135
Improve documentation of sigma
2013-09-01 16:46:01 +02:00
f5cfbcfe97
Reorder variable declarations
2013-09-01 16:46:01 +02:00
bd388383a0
Fix bug in window extent determination
2013-09-01 16:46:01 +02:00
bc7efb01e4
Fix dtype bug
2013-09-01 16:46:01 +02:00
84579a6c2c
Remove legacy comment
2013-09-01 16:46:01 +02:00
471b293a9e
Remove unnecessary parameters and update doc string
2013-09-01 16:46:00 +02:00
6b5556b279
Reduce memory footprint
2013-09-01 16:46:00 +02:00
fd729a4e30
Improve SLIC
2013-09-01 16:46:00 +02:00
a401cb8d9d
Merge pull request #721 from ahojnnes/travis
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Remove unnecessary mirror option.
2013-09-01 07:45:05 -07:00
74b932e1be
Remove unnecessary mirror option
2013-09-01 16:03:14 +02:00
586a7c9087
Merge pull request #720 from michaelaye/patch-1
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removing some unused selem declarations
2013-08-31 23:31:45 -07:00
1bcc2b418a
removing some unused selem declarations
2013-08-31 22:48:49 -07:00
997339beae
FEAT: add tests for marching cubes and mesh surface area
2013-08-30 12:36:32 -05:00
b6f25906d6
DOCFIX: clarify docstrings and output vertex dimension ordering
2013-08-30 12:36:31 -05:00
19b8831a0d
FIX: incorrect name for unpack_unique_verts, revert axis ordering
2013-08-30 12:36:31 -05:00
fcd20e5660
FIX: use memoryviews, docfix, and change tri_list to face_list
2013-08-30 12:36:31 -05:00
164b416bd9
FIX: volume now directly cast, docfixes, C-contiguous ordering
2013-08-30 12:36:31 -05:00
f8cc4799da
FIX: dimension ordering now correct (x, y, z)
2013-08-30 12:36:31 -05:00
165de870d0
fix error in triangulation of case 120
2013-08-30 12:36:31 -05:00
296d102047
fix: symmetric ambiguous dual-plane cases require special treatment
2013-08-30 12:36:31 -05:00
44c04996c7
move unpack_unique_verts to Cython for speed
2013-08-30 12:36:31 -05:00
d2e51aa035
fix import error from _marching_cubes_cy
2013-08-30 12:36:31 -05:00
9a86aba226
rename files to conform with naming conventions
2013-08-30 12:36:31 -05:00
9779cd5e4a
fix: bug in second _append_tris call in case 125
2013-08-30 12:36:31 -05:00
5b990a0856
fix import of _marching_cubes
2013-08-30 12:36:31 -05:00
855031ad47
add _marching_cubes.pyx to list of Cython modules to build
2013-08-30 12:36:30 -05:00
84618af7c7
import marching_cubes and mesh_surface_area
2013-08-30 12:36:30 -05:00
5eba5a42a7
FEAT: Full 3d anisotropic implementation of marching cubes
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Also includes surface area calculation algorithm from
generated mesh.
Convenient output to visualize with `mayavi.mlab`.
Efficient Cython implementation.
2013-08-30 12:34:55 -05:00
55e42309b8
Merge pull request #712 from emmanuelle/gaussian_filter
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Add a wrapper around `scipy.ndimage.gaussian_filter` with useful default behaviors.
2013-08-30 10:27:41 -07:00
radioxoma