(1) normalize_indices in _mcp.pyx should convert indices to ints: fixed
(2) huge (order of magnitude) performance problems in heap.pyx from changing
lines like:
ii = (i-1)/2 # CalcPrevAbs
to:
ii = (int)(i-1)/2 # CalcPrevAbs
for some reason, the latter goes through the python division machinery!
However, the former is invalid for cython >=0.12, so the proper solution is:
ii = (i-1)//2 # CalcPrevAbs
spath.shortest_path presents the same interface, but now uses the new mcp
classes internally, which means that it is now fully n-d, and can also find
the shortest path along any given axis. The old output format has been
retained, but is a bit weird for non-2d arrays. A more sensible n-d output
format is available, but not enabled by default.
Zachary Pincus