ee5c6fbeb2
Use relative imports in skimage files
2015-01-22 07:36:48 -05:00
9eed552ee7
Replace em-dash with regular dash in comment
2015-01-22 11:38:37 +11:00
7935e51596
Clarify and fix docstrings
2015-01-22 11:38:37 +11:00
ac5c0c30a9
Fix incorrect call to mark_boundaries in test
2015-01-22 11:38:37 +11:00
9b9730b058
Specify mode for mark_boundary tests
2015-01-22 11:38:37 +11:00
6586d1eb3f
Test subpixel mark_boundaries
2015-01-22 11:38:37 +11:00
307d4b6137
Simplify code for coloring boundaries
2015-01-22 11:38:37 +11:00
242dbf9b2b
Don't outline boundaries by default
...
mark_boundaries used to draw outlines by default. This was necessary
partly because of the asymmetric way boundaries were being drawn. Now,
boundaries are either thick or drawn around background or drawn with
subpixel precision, so I suggest that outlines are less needed.
2015-01-22 11:38:37 +11:00
cb2002c367
Allow custom background_label in mark_boundaries
2015-01-22 11:38:36 +11:00
257502c099
Prevent unnecessary array copy for RGB images
2015-01-22 11:38:36 +11:00
28591cc3ee
Allow different modes in mark_boundaries
2015-01-22 11:38:36 +11:00
a406f8dd2a
Make subpixel find_boundary doctest more readable
2015-01-22 11:38:36 +11:00
a55e3346f7
Set up correct type for find_boundaries test
2015-01-22 11:38:36 +11:00
fb893c277d
Add correct subpixel boundary estimation.
2015-01-22 11:38:36 +11:00
9c78fce4cd
Remove unused deprecation warning
2015-01-22 11:38:36 +11:00
32a960db0d
Fix 'outer' mode of find_boundaries
2015-01-22 11:38:36 +11:00
ff1631c717
Update find_boundaries with new modes
2015-01-22 11:38:36 +11:00
b1891dc24e
Make find_boundaries symmetric
...
Fixes #738
2015-01-22 11:38:35 +11:00
72125aac07
Add underscore for ReST reference
2015-01-19 09:03:30 +11:00
879a7b0bb5
Update treatment of convert2lab in slic
...
It still defaults to `True` but only when the last dimension of the
input array could be construed as RGB.
Also, update ValueError description in docstring.
2015-01-16 13:11:25 +11:00
c102a0bf0e
Add reference to SLIC0 in SLIC docstring
2015-01-16 12:08:13 +11:00
f898bd0209
Style fixes
2014-12-26 11:26:30 -06:00
d760c0adda
Fix scipy.sparse.sparsetools warning
2014-12-24 11:20:52 -06:00
bea57315fb
Update docstring and fix pyamg warning check
2014-12-24 09:10:11 -06:00
23ae571689
Fix final failing test on Py2.6 build
2014-12-24 08:49:51 -06:00
c0a0490eed
Fix handling of multiple warnings and update tests
...
Fix handling of multiple warnings
Update all test __init__ files
Update segmentation pkg
Update the color pkg
Update the exposure pkg
Update the filters pkg
Update the io pkg
Update the measure pkg
Update morphology package
Restructure test setup function
Add expected_warnings to __all__
Update restoration pkg.
Remove explicit filter check since it is done elsewhere
Fix the image test helpers
Update the transform pkg
Fix util pkg
Update viewer pkg
2014-12-23 16:51:06 -06:00
a4e4e57ba5
Create new expected_warnings helper and some cleanup
...
Add new helper function for expected warnings during test
Indentation cleanups and avoid skipping doctests if possible.
2014-12-23 16:50:18 -06:00
4680f30466
Add a test setup helper function
...
Add a function to set up a skimage test
Switch to new test helper function
Import local packages that raise warnings in test setup function
More fixes to doctests
Fix regionprops doc test
Try and fix the test_rank failure.
Remove no longer needed RectangleSelector shim
Skip more doctests in _regionprops
Try importing another scipy subpackage
2014-12-23 16:49:20 -06:00
f72882fbd2
Import scipy before turning on warnings
2014-12-23 16:49:19 -06:00
0debedd82c
Handle more warnings and reset io plugins as needed
...
Reset plugins prior to running collections test
Handle warnings in morphology pkg
Add __init__ for morpohology tests
Handle warnings for novice pkg
Handle warnings for restoration pkg
Handle warnings for segmentation pkg
Handle warnings for _shared pkg
Handle warnings for transform pkg
Handle warnings for util pkg
Handle warnings in viewer module
2014-12-23 16:48:16 -06:00
3a1079a180
Misc PEP8 fixes
2014-12-14 02:56:14 +01:00
78a7b7307a
Rename and deprecate filter module to prevent shadowing of built-in keyword
2014-11-10 12:53:50 +02:00
1b217f971e
replacing lena in examples and most tests
2014-11-07 16:01:23 +02:00
caaf75ebd1
Fix failing doctests
2014-07-19 19:16:46 -05:00
5677dafe41
Move away from random.random in favor of random.rand
2014-07-19 18:18:23 -05:00
7a074d5dd1
BUG: Fix slicing error revealed by numpy 1.9.0.
...
Numpy 1.9.0 no longer allows oversize data to be assigned to a
boolean indexed 1-d array by discarding excess elements.
Closes #1050 .
2014-07-04 20:12:46 -06:00
6546b9dba4
Merge pull request #1007 from stefanv/label_refactor
...
Move `morphology.label` to `measure.label` and prepare for 0-label transition
2014-05-25 21:56:42 -04:00
3fab7c0057
Remove incorrect np.round statement (directly cast m)
2014-05-08 18:54:52 -05:00
46829c6a33
Move implementation of label to measure submodule
2014-05-08 18:04:03 +02:00
26793068b1
Fix documentation, handle internal variable more efficiently.
2014-05-08 02:32:39 -05:00
069cba50ef
FIX: Address non-int DeprecationWarning from NumPy
2014-05-07 23:54:17 -05:00
4aa162fc78
FIX: Remove unnecessary .transpose introduced in PR #984
2014-05-07 22:10:27 -05:00
0d775c3aab
Remove check for non-numeric values in spacing.
2014-05-07 02:42:38 -05:00
0ac86b3e96
STY: More elegant and maintainable style per code review
2014-05-06 02:16:45 -05:00
88f08ebea2
TST: Add unit test for length-2 spacing with rank-2 input
2014-04-19 11:40:16 -05:00
7847287f46
FIX: Shortcut output or catch trivial cases in random_walker
...
Also:
* New tests to cover these new checks
* Improvements to docstrings and user warnings
* Generalize handling of `sampling` in accordance with docstring
* Some extra whitespace to improve readability
2014-04-18 18:47:20 -05:00
7161175e43
DOC: Clarify UMFPACK warning; use if statements instead of assert
2014-04-18 16:52:19 -05:00
44f3e1b136
Remove deprecated skimage.segmentation.visualize_boundaries
2014-04-11 10:05:51 -04:00
18ce9d2b95
Remove depth from random_walker tests
2014-04-09 23:44:34 +10:00
264ca6ebd9
Remove deprecated depth parameter in random_walker
...
This has been supplanted by the `spacing` parameter.
2014-04-09 23:41:37 +10:00
Johannes Schönberger