Almar
644ab324dd
Added test for ball and octahedton selems.
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Note that only the center slice (in each dimension is tested)
since there is no reference data available for these selems.
I did visualize the 3D shapes to see whether they look right.
2013-03-28 10:03:02 +01:00
Almar
77192b6e9a
Adding octahedron selem (3D equivalent of diamond).
2013-03-28 09:48:25 +01:00
Almar
fa6a30198c
Fix typo in docstring of disk().
2013-03-27 21:54:49 +01:00
Almar
42c72ab106
Add ball selem. I verified in 2D that this usage of np.mgrid yields the exact same results as np.meshgrid (np.meshgrid is not available for 3D).
2013-03-27 21:52:07 +01:00
Almar
cbf1657ee7
Add cube selem.
2013-03-27 21:50:08 +01:00
François Boulogne
35d6973215
fix deprecated variable
2013-03-24 16:34:27 +01:00
François Boulogne
96d0e677dd
cosmectics (flake8)
2013-03-24 15:52:14 +01:00
François Boulogne
0e4d107754
fix signature
2013-03-24 15:39:07 +01:00
François Boulogne
42e872f926
fix names
2013-03-24 15:22:42 +01:00
François Boulogne
a68434b330
big clean-up!
2013-03-24 15:11:55 +01:00
François Boulogne
caee53c83c
doc, minor improv.
2013-03-22 23:31:06 +01:00
François Boulogne
29b91ca01d
minor doc improv.
2013-03-22 23:16:13 +01:00
François Boulogne
33060e3343
Fix docstring
2013-03-22 23:12:18 +01:00
François Boulogne
22158fc9da
improve unittests
2013-03-22 23:11:29 +01:00
François Boulogne
12d2cd6855
be consistant with python implementation
2013-03-22 22:07:39 +01:00
Josh Warner (Mac)
4b43e9f33e
workaround: convert dtype(image) to image.astype(dtype)
2013-03-21 00:17:56 -05:00
François Boulogne
4e0db80c24
remove docstring
2013-03-20 18:30:52 +01:00
François Boulogne
30af0a66a2
replace hough() by hough_line() in doc
2013-03-20 18:30:19 +01:00
François Boulogne
1ddf37b6b6
add note for distance/angle convention. Thanks to Emre Safak.
2013-03-20 08:51:04 +01:00
François Boulogne
ee915cd9ea
Merge branch 'docstring' of github.com:sciunto/scikit-image
2013-03-20 08:37:54 +01:00
François Boulogne
6b1c809a78
DOC: add docstring for deprecation
2013-03-19 21:16:34 +01:00
Johannes Schönberger
18b3d1f7e3
Fix reference syntax for corner detectors
2013-03-19 09:33:10 +01:00
Johannes Schönberger
9968dfd8fe
Merge pull request #467 from malcolmreynolds/fix-num-peaks-typo
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FIX: number of peaks returned from feature.corner_peaks
2013-03-18 08:55:17 -07:00
Malcolm Reynolds
042b75d05f
FIX: changed xrange to range so Python 3 works.
2013-03-18 15:31:45 +00:00
Malcolm Reynolds
920e41398d
FIX: move corner detection outside loop in test_num_peaks.
2013-03-18 15:23:35 +00:00
Malcolm Reynolds
0fde67bb56
TEST: added test for num_peaks kwarg in peak_local_max.
2013-03-18 15:13:18 +00:00
Johannes Schönberger
c5bdf00e82
Fix parameter list format error of rotate
2013-03-16 18:03:04 +01:00
François Boulogne
a3d73bdd61
DOC: minor fix ellipse_perim.
2013-03-16 13:25:01 +01:00
Malcolm Reynolds
44095eef81
FIX: number of peaks returned from feature.corner_peaks
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corner_peaks accepted a num_peaks argument, but the call
to peak_local_max inside the function used np.inf instead
of the value of this keyword argument, leading to an unbounded
number of peaks being returned.
2013-03-15 18:50:43 +00:00
Stefan van der Walt
a41d74caa4
Merge pull request #441 from spotter/color_deconv
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ENH: Adding color deconvolution for immunohistochemical images.
2013-03-14 06:04:22 -07:00
Xavier Moles Lopez
d0a15a7cf9
FIX: Example in combine_stains docstring.
2013-03-13 15:14:39 +01:00
Stefan van der Walt
bad3915d2a
Merge pull request #463 from ahojnnes/pdf-docs
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DOC: Fix LaTeX documentation.
2013-03-13 07:02:38 -07:00
Xavier Moles Lopez
b75776cc2e
ENH: Updated stain separation function docstrings and added matrices to __all__
2013-03-13 14:35:16 +01:00
Johannes Schönberger
16863535eb
Re-enable plots in doc strings and generate PDF images for them
2013-03-13 10:59:26 +01:00
spotter
74acdc9fa9
FIX: changed unicode dash in docstrings.
2013-03-12 17:09:17 +01:00
spotter
6f7158046f
FIX: combine_stains docstring.
2013-03-12 16:41:02 +01:00
spotter
b3e557b550
FIX: using the new stain separation functions for the special case of hed.
2013-03-12 16:19:51 +01:00
spotter
c43986d6d6
ENH: Adding tests for new stain separation functions.
2013-03-12 16:15:41 +01:00
spotter
f48097c5ca
FIX: fixed docstrings. ENH: Added new stain separation matrices.
2013-03-12 16:06:32 +01:00
spotter
20f27345c3
FIX: rgb2hed and hed2rgb can work with both signed and unsigned image.
2013-03-12 14:22:53 +01:00
Johannes Schönberger
0324737c47
Fix some doc strings for latex docs
2013-03-12 09:39:42 +01:00
Johannes Schönberger
332c21f979
Make deprecation warning in doc string bold
2013-03-12 07:29:39 +01:00
Johannes Schönberger
a0d9d3f213
Use double instead of single quotes for doc string
2013-03-12 07:28:15 +01:00
Johannes Schönberger
0cb0fee339
Remove duplicate code for alternative function
2013-03-11 23:21:52 +01:00
Johannes Schönberger
483ebae0c0
Change deprecated decorator to display warning in doc string
2013-03-11 23:18:54 +01:00
Juan Nunez-Iglesias
b306f9b70f
Revert remove_small_objects to raise TypeError
2013-03-10 19:23:04 +11:00
spotter
5b25e7e961
FIX: Replaced non-ascii double quotes in Ruifrok reference.
2013-03-09 13:23:36 +01:00
spotter
7c371e1662
FIX: img_as_ubyte function threw ValueError due to floating point errors in hed2rgb function.
...
Clipping the output of the hed2rgb function between 0 and 1 seems to correct
the bug without affecting the conversion quality.
2013-03-08 12:58:22 +01:00
Stefan van der Walt
d7d87c9461
Merge pull request #390 from tonysyu/canvastools
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ENH: Major overhaul of canvastools.
2013-03-07 23:18:30 -08:00
spotter
7439fe96e8
FIX: Testing for ubyte and float images. Input dtypes are converted beforehand.
2013-03-07 00:14:06 +01:00
Almar