4644bdd347
Merge pull request #874 from emmanuelle/nlm_denoise
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FEAT: NL-means denoising
2015-02-19 16:53:58 -06:00
3eb775542f
Added some comments inside Cython functions.
2015-02-10 23:22:42 +01:00
5ccdd36bc3
Remove imshow from PIL plugin
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Do not provide imshow, show in PIL plugin to prevent conflicts
Make the sphinx install quiet
Fix local linka
Fix literal blocks
Fix another local link
Fix richardson-lucy link
Assert world dominance
2015-02-07 16:40:44 -06:00
4c9dbe1e18
Added a comment about normalization.
2015-02-02 22:55:49 +01:00
0f4b092578
Added comment for inner loops.
2015-02-01 23:31:09 +01:00
bcd24eab86
Removed a few redundant lines.
2015-02-01 23:11:34 +01:00
6770e9e557
Modified name of image dtype.
2015-02-01 22:51:00 +01:00
50907cd8e7
Modified variables' names.
2015-02-01 22:43:18 +01:00
ee81e00c0e
Helper functions for computing the integral of the difference between
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image and shifted image.
2015-02-01 22:30:00 +01:00
4dbf33b9ca
PEP 8: spaces and operators
2015-02-01 20:33:57 +01:00
009e761411
[ENH] Docstring cleaning
2015-01-29 22:40:46 +01:00
112b0b4fcd
Global constant defined for distance cutoff
2015-01-29 21:36:08 +01:00
4697d66c85
[ENH] Removed eps parameter that was not needed.
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Added a test for the case when no denoising at all is performed when h is
very small.
Corrected a bug in looping range in the classical algorithm.
2015-01-26 22:06:38 +01:00
2e0b37b11d
Changed variable names for coordinates for better consistency with
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skimage conventions. Moved some code to inline functions to improve
clarity.
2015-01-25 19:21:23 +01:00
e83873d563
Removed blank lines in docstring
2015-01-25 16:42:39 +01:00
065bc18253
Merged 2D and 2D RGB functions for non-local means denoising
2015-01-25 16:40:07 +01:00
fa13744d59
Changed API of nl_means_denoising function to have a multichannel flag
2015-01-25 11:49:45 +01:00
ec6aa2a017
Added docstring to helper functions in cython submodule
2015-01-25 11:49:07 +01:00
ee5c6fbeb2
Use relative imports in skimage files
2015-01-22 07:36:48 -05:00
738953b946
image_unwrapped created as ndarray always
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In unwrap_phase the image_unwrapped variable is created as an
ndarray even when image is a masked array.
2015-01-21 19:37:23 -06:00
8eebb17bac
No SegFault when unwrapping a 3D fully masked array
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The unwrap_phase function no longer causes a Segmentation fault when passed
a 3D array in which all elements are masked.
Closes #1347
2015-01-21 16:45:23 -06:00
d3024b5c73
No SegFault when unwrapping a 2D fully masked array
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The unwrap_phase function no longer causes a Segmentation fault when passed
a 2D array in which all elements are masked.
2015-01-21 16:36:58 -06:00
de01ea56ae
unwrap_phase returns masked array when image is masked
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With commit e3b84ed
2015-01-21 16:23:50 -06:00
eef3734bfe
Remove end of line whitespace in test_unwrap.py
2015-01-21 16:03:18 -06:00
8ebe073ad5
BUG: unwrap_phase on compressed masked array
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unwrap_phase works on masked arrays with a compressed mask (no elements masked)
Closes #1346
2015-01-21 16:01:13 -06:00
60d0c81aed
Changed type of error returned for image dimension strictly greater than 3.
2015-01-20 22:11:24 +01:00
dd9030d44c
Implemented fast algorithm also for 3-D and 2D-RGB images. Changed API so
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that there is only one function for fast and classic algorithms.
2015-01-18 22:18:29 +01:00
8b9a777c79
Bug correction: I had forgotten to add __init__.py
2015-01-11 22:37:42 +01:00
c5e38dc5b1
Renamed module, since tests were breaking because module and function
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had the same name.
2015-01-10 19:11:15 +01:00
ecaa959195
Implemented asymmetric distance computation to save speed factor of 2
2015-01-10 16:40:43 +01:00
1d8e02bf38
Removed normalization of h parameters because float images will be
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normalized anyway.
2015-01-10 12:15:26 +01:00
f898bd0209
Style fixes
2014-12-26 11:26:30 -06:00
c0a0490eed
Fix handling of multiple warnings and update tests
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Fix handling of multiple warnings
Update all test __init__ files
Update segmentation pkg
Update the color pkg
Update the exposure pkg
Update the filters pkg
Update the io pkg
Update the measure pkg
Update morphology package
Restructure test setup function
Add expected_warnings to __all__
Update restoration pkg.
Remove explicit filter check since it is done elsewhere
Fix the image test helpers
Update the transform pkg
Fix util pkg
Update viewer pkg
2014-12-23 16:51:06 -06:00
4680f30466
Add a test setup helper function
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Add a function to set up a skimage test
Switch to new test helper function
Import local packages that raise warnings in test setup function
More fixes to doctests
Fix regionprops doc test
Try and fix the test_rank failure.
Remove no longer needed RectangleSelector shim
Skip more doctests in _regionprops
Try importing another scipy subpackage
2014-12-23 16:49:20 -06:00
f72882fbd2
Import scipy before turning on warnings
2014-12-23 16:49:19 -06:00
0debedd82c
Handle more warnings and reset io plugins as needed
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Reset plugins prior to running collections test
Handle warnings in morphology pkg
Add __init__ for morpohology tests
Handle warnings for novice pkg
Handle warnings for restoration pkg
Handle warnings for segmentation pkg
Handle warnings for _shared pkg
Handle warnings for transform pkg
Handle warnings for util pkg
Handle warnings in viewer module
2014-12-23 16:48:16 -06:00
03be934e6d
Set seed for test cases
2014-12-16 16:38:01 +01:00
3b0651c202
Expose seed parameter, fix doc string
2014-12-16 16:36:30 +01:00
b72a960670
DOC: Misc spell corrections
2014-12-16 11:41:24 +05:30
1da86def59
Make the initialization deterministic
2014-12-16 00:54:32 +01:00
8a790bf884
Improve code style
2014-12-16 00:52:42 +01:00
3a1079a180
Misc PEP8 fixes
2014-12-14 02:56:14 +01:00
873a2bab4f
Modified a few docstrings that made doctesting fail
2014-12-07 16:58:36 +01:00
4004f048ef
Faster version of non-local means denoising for 2D greyscale images
2014-12-07 12:02:05 +01:00
e26f9028eb
Modified import to be compatible with Python 3
2014-12-06 13:58:09 +01:00
2e91b0db95
Moved non-local means denoising to restoration submodule
2014-12-06 13:16:40 +01:00
034a7adab3
Use equal_nulp for more robust test comparison
2014-11-07 16:04:54 +02:00
1b217f971e
replacing lena in examples and most tests
2014-11-07 16:01:23 +02:00
8bba07a7f2
Merge pull request #1171 from jjhelmus/unwrap_phase_3d_bug
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BUG: segmentation fault when unwrapping 3d image
2014-11-07 13:39:18 +02:00
25653dc288
TST: Unit test to check for 3d unwrap seg fault
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Added a unit test to check for bug in unwrap_phase which causes
a segmentation fault when the middle dimension is connected.
2014-11-06 21:03:14 -06:00
Josh Warner