Commit Graph

168 Commits

Author SHA1 Message Date
Steven Silvester 0e61374a89 Add a helper function to check for low contrast
Add a helper function to check for low contrast

Add a check for low contrast when using imsave

Use the low contrast helper in imshow and make sure warnings are always shown

Clean up parameter names and add doctests

Remove unnecessary warning context

Remove unnecessary warning context

Add dtype ranges for 64bit types

Update tests with new warnings

Fix doctest logic

Fix doctest logic

Add a low contrast test with multiple dtypes

Fix check for color images

Fix color check again

Add support for int32 types

Relax assertion for 32bit builds

Add a low contrast test with multiple dtypes

Add a low contrast test with multiple dtypes

Fix check for color images

Fix color check again

Add support for int32 types
2015-03-09 21:34:58 -05:00
Steven Silvester 09876408fc Fix some sphinx warnings and add to build
Fix some sphinx warnings

Add documentation build to test

Add documentation build to test

Remove change in numpydoc

Remove change in apigen

Add makefile target for html and add to travis script

Add a makefile target for html and add to travis script

Fix more sphinx warnings
2015-02-07 16:40:26 -06:00
Juan Nunez-Iglesias 7935e51596 Clarify and fix docstrings 2015-01-22 11:38:37 +11:00
Juan Nunez-Iglesias d538abdb97 Fix order kwarg for some versions of numpy.copy
It seems it isn't always a valid kwarg. This bypasses that problem
by calling `np.array` directly (which is just what `np.copy` does
under the hood anyway).
2015-01-22 11:38:36 +11:00
Juan Nunez-Iglesias 92433b2961 Fix and test 0-end bug in crop 2015-01-22 11:38:35 +11:00
Juan Nunez-Iglesias 893c3be289 Import crop into util package namespace 2015-01-22 11:38:35 +11:00
Juan Nunez-Iglesias c96fdb9338 Fix automatic copy even when copy=False in crop 2015-01-22 11:38:35 +11:00
Juan Nunez-Iglesias d7138f1a51 Fix incorrect crop tests 2015-01-22 11:38:35 +11:00
Juan Nunez-Iglesias eaa2aec3cc Add test functions for crop 2015-01-22 11:38:35 +11:00
Juan Nunez-Iglesias fb7ed1d253 Add crop function, inverse to pad 2015-01-22 11:29:09 +11:00
Josh Warner (Mac) aa2215ccfc ENH: Fully cover pad and backports from NumPy 0.10dev 2015-01-16 21:54:02 -07:00
Steven Silvester f898bd0209 Style fixes 2014-12-26 11:26:30 -06:00
Steven Silvester 2d3ada19e5 Allow for no exceptions to be raised and cleanup
Allow for no exceptions to be raised

Add some helpful comments

Remove doctest skips

Remove TODO note

Cleanup and skip failing doctest
2014-12-23 16:51:18 -06:00
Steven Silvester c0a0490eed Fix handling of multiple warnings and update tests
Fix handling of multiple warnings

Update all test __init__ files

Update segmentation pkg

Update the color pkg

Update the exposure pkg

Update the filters pkg

Update the io pkg

Update the measure pkg

Update morphology package

Restructure test setup function

Add expected_warnings to __all__

Update restoration pkg.

Remove explicit filter check since it is done elsewhere

Fix the image test helpers

Update the transform pkg

Fix util pkg

Update viewer pkg
2014-12-23 16:51:06 -06:00
Steven Silvester 4680f30466 Add a test setup helper function
Add a function to set up a skimage test

Switch to new test helper function

Import local packages that raise warnings in test setup function

More fixes to doctests

Fix regionprops doc test

Try and fix the test_rank failure.

Remove no longer needed RectangleSelector shim

Skip more doctests in _regionprops

Try importing another scipy subpackage
2014-12-23 16:49:20 -06:00
Steven Silvester f72882fbd2 Import scipy before turning on warnings 2014-12-23 16:49:19 -06:00
Steven Silvester 0debedd82c Handle more warnings and reset io plugins as needed
Reset plugins prior to running collections test

Handle warnings in morphology pkg

Add __init__ for morpohology tests

Handle warnings for novice pkg

Handle warnings for restoration pkg

Handle warnings for segmentation pkg

Handle warnings for _shared pkg

Handle warnings for transform pkg

Handle warnings for util pkg

Handle warnings in viewer module
2014-12-23 16:48:16 -06:00
Johannes Schönberger 3a1079a180 Misc PEP8 fixes 2014-12-14 02:56:14 +01:00
Almar Klein 0e7daf41dc Update docs in dtype.py: mention scaling of values 2014-11-25 08:43:58 +01:00
Almar Klein 9bccefbc5e Update docs for img_as_ubyte
The line in `img_as_ubyte` needs correction; ubyte cannot hold negative data. From a quick experiment it seems like both `img_as_uint` and `img_as_ubyte` clip negative values (and not shift them to the positive domain).
2014-11-21 22:36:04 +01:00
Josh Warner (Mac) 1ca0eef825 FIX: Non-integer indexing deprecation warnings 2014-05-08 00:39:54 -05:00
Stefan van der Walt 86beb21e5a Move all_warnings to skimage._shared.utils 2014-04-27 03:23:22 +02:00
Stefan van der Walt 8fdd5a270d In all_warnings context manager, return warnings for examination 2014-04-27 02:16:41 +02:00
Stefan van der Walt 337f3d175f Update shape tests to use all_warnings 2014-04-27 02:10:29 +02:00
Stefan van der Walt 132aa8bbd3 Add all_warnings context manager
The context manager searches for __warningregistry__ entries that
Python leaves all over the place, clearing them, thereby ensuring
that warnings will always be raised.  This is necessary for the test
suite to detect warnings even if they were raised before under
the "once" filter.
2014-04-27 02:08:33 +02:00
Stefan van der Walt 717f5feb51 Fix typo in docstring 2014-04-08 11:15:24 +02:00
Stefan van der Walt c18d4bbe59 Update view_as_windows docstring 2014-04-07 18:18:09 +02:00
Stefan van der Walt 12af2ef7ed Take a softer approach and raise a warning when a non-contiguous input is provided 2014-04-07 18:15:49 +02:00
Stefan van der Walt 5733a02853 Do not allow view_as_* to return copies (closes #866) 2014-04-07 14:41:56 +02:00
François Boulogne ced3f5656f DOC: specify range for step 2014-03-15 07:42:08 -04:00
François Boulogne cf7a184ba7 TEST: add test on step 2014-03-15 07:40:39 -04:00
François Boulogne 217b0aa697 MAINT: remove blank lines 2014-03-15 07:39:06 -04:00
Johannes Schönberger f280e0b13e Fix regular grid doctest 2014-03-13 18:24:59 -04:00
Josh Warner faa4f571d4 Merge pull request #847 from ahojnnes/template
Fix bugs in array padding and template matching
2014-01-13 19:13:55 -08:00
Juan Nunez-Iglesias a67c5e1e2b Explicity cast start, step to int in regular_grid 2013-12-13 00:54:57 +11:00
Johannes Schönberger 33d00e7411 Update arraypad tests 2013-12-09 00:07:00 +01:00
Johannes Schönberger 783c04baec Fix bug in array padding, template matching 2013-12-08 18:54:02 +01:00
Johannes Schönberger 5038a0e958 Remove numpy prefix from pad function examples 2013-11-03 18:16:25 +01:00
Johannes Schönberger 256a0bad07 Fix montage2d doctest 2013-11-03 09:55:06 +01:00
Stefan van der Walt eb6867cfe2 Make six an external dependency. 2013-10-27 14:06:26 +02:00
François Boulogne 65f73ee171 DOC: fix syntax error 2013-10-14 16:25:29 +02:00
François Boulogne 69bdfe0339 PEP8 another one 2013-10-14 16:22:29 +02:00
Josh Warner (Mac) 1c5dc10f4d FEAT: Add 'localvar' mode to random_noise 2013-10-13 12:21:29 -05:00
Josh Warner (Mac) f20aa5e661 FIX: Better handling of skimage.data.camera for Python3 compatibility 2013-10-12 09:32:46 -05:00
Josh Warner (Mac) 9f7a2f4fbc ENH: Tighten tests, all noise types now support signed I/O 2013-10-11 16:53:16 -05:00
Josh Warner (Mac) f435afebd5 ENH: Add optional clip kwarg, docs, & handling of signed inputs. 2013-10-11 16:39:22 -05:00
Josh Warner (Mac) c2e4442eaf ENH: More concise next-power-of-2 calculation 2013-10-11 10:51:07 -05:00
Josh Warner (Mac) de42ba831a FIX: Fix and improve Poisson random noise generator
The Poissson generator now works.

The improved Poisson generator now infers the bit depth of the image
after conversion to a floating point image, by analyzing the unique
values present and finding the next power of two. This value is then
used to scale the floating point image up, after which Poisson
noise is generated, and then image is then scaled back down.
2013-10-11 01:53:15 -05:00
Johannes Schönberger 3e3a52331d Misc doc string fixes 2013-10-02 17:07:23 +02:00
Johannes Schönberger 445dd7e859 Merge pull request #630 from JDWarner/improve_noise
ENH: Improve random_noise with better param names & docfixes
2013-09-14 01:41:08 -07:00