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4322 Commits
Author SHA1 Message Date
Johannes Schönberger 05aaeef5ac Change default value of sigma 2013-09-14 10:08:07 +02:00
Juan Nunez-Iglesias 2af5c41571 Fix type hierarchy check in remove_small_objects 2013-09-09 13:53:33 +10:00
radioxomaandradioxoma c8c95c0e63 Fix import list sequence 2013-09-07 19:10:40 +03:00
radioxomaandradioxoma 04804cc81c Logarithm optimisation 2013-09-07 19:10:40 +03:00
radioxomaandradioxoma 9e74f4eb70 Added Yen tests, typo fixed 2013-09-07 19:10:40 +03:00
radioxomaandradioxoma 8beb2ae605 Yen PEP8 and docstrings 2013-09-07 19:10:40 +03:00
radioxomaandradioxoma e41887c66d Codestyle improvement 2013-09-07 19:10:40 +03:00
radioxomaandradioxoma a315ae718d Add Yen threshold method 2013-09-07 18:48:46 +03:00
Josh Warner (Mac) 6f5f6a0a7a DOC: Further improvements to naming conventions. 2013-09-07 00:39:04 -05:00
Juan Nunez-Iglesias 34b1b7b414 Fix errors in relabel_from_one docs; PEP8 2013-09-07 00:51:21 +10:00
Johannes Schönberger 22ca0ae457 Fix indentation 2013-09-03 20:31:24 +02:00
Emmanuelle Gouillart 8ed56abb42 Merge pull request #469 from JDWarner/add_marching_cubes 
3D Marching Cubes
 2013-09-03 04:55:29 -07:00
Johannes Schönberger 8137c41e22 Add optional description to parameters 2013-09-03 10:48:53 +02:00
Johannes Schönberger 770e28d2bb Rename clusters to segments 2013-09-03 10:47:49 +02:00
Johannes Schönberger d9e64b43e6 Make image C-contiguous 2013-09-03 08:40:18 +02:00
Josh Warner (Mac) abc7a16a80 STYLE: Use np.array instead of np.r_ and import Poly3DCollection 2013-09-02 15:31:51 -05:00
Josh Warner (Mac) 1174d6fbc5 FIX: Errors in unit tests 2013-09-01 22:05:39 -05:00
Josh Warner (Mac) 50d73fdd62 TEST: Add test suite for draw3d (ellipsoid/ellipsoid_stats) 2013-09-01 21:31:53 -05:00
Josh Warner (Mac) 14a0685838 MAINT: Refactor ellipsoid generator into skimage.draw 2013-09-01 20:51:20 -05:00
Josh Warner (Mac) d0d9fee36e DOC: Minor documentation formatting fixes in marching cubes 2013-09-01 20:49:58 -05:00
Stefan van der Walt b0d3b92e74 Add skip parameter to view_as_windows. 2013-09-01 23:50:54 +02:00
Johannes Schönberger 80ed875147 Add missing rgb2lab import 2013-09-01 17:12:10 +02:00
Johannes Schönberger a6d1b10e25 Use absolute imports 2013-09-01 16:53:05 +02:00
Johannes Schönberger eeddd9e35f Revert multichannel magic and improve parameter docs 2013-09-01 16:46:01 +02:00
Johannes Schönberger e5eea8e135 Improve documentation of sigma 2013-09-01 16:46:01 +02:00
Johannes Schönberger f5cfbcfe97 Reorder variable declarations 2013-09-01 16:46:01 +02:00
Johannes Schönberger bd388383a0 Fix bug in window extent determination 2013-09-01 16:46:01 +02:00
Johannes Schönberger bc7efb01e4 Fix dtype bug 2013-09-01 16:46:01 +02:00
Johannes Schönberger 84579a6c2c Remove legacy comment 2013-09-01 16:46:01 +02:00
Johannes Schönberger 471b293a9e Remove unnecessary parameters and update doc string 2013-09-01 16:46:00 +02:00
Johannes Schönberger 6b5556b279 Reduce memory footprint 2013-09-01 16:46:00 +02:00
Johannes Schönberger fd729a4e30 Improve SLIC 2013-09-01 16:46:00 +02:00
Josh Warner (Mac) 997339beae FEAT: add tests for marching cubes and mesh surface area 2013-08-30 12:36:32 -05:00
Josh Warner (Mac) b6f25906d6 DOCFIX: clarify docstrings and output vertex dimension ordering 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) 19b8831a0d FIX: incorrect name for unpack_unique_verts, revert axis ordering 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) fcd20e5660 FIX: use memoryviews, docfix, and change tri_list to face_list 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) 164b416bd9 FIX: volume now directly cast, docfixes, C-contiguous ordering 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) f8cc4799da FIX: dimension ordering now correct (x, y, z) 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) 165de870d0 fix error in triangulation of case 120 2013-08-30 12:36:31 -05:00
JDWarner 296d102047 fix: symmetric ambiguous dual-plane cases require special treatment 2013-08-30 12:36:31 -05:00
JDWarner 44c04996c7 move unpack_unique_verts to Cython for speed 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) d2e51aa035 fix import error from _marching_cubes_cy 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) 9a86aba226 rename files to conform with naming conventions 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) 9779cd5e4a fix: bug in second _append_tris call in case 125 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) 5b990a0856 fix import of _marching_cubes 2013-08-30 12:36:31 -05:00
Josh Warner (Mac) 855031ad47 add _marching_cubes.pyx to list of Cython modules to build 2013-08-30 12:36:30 -05:00
Josh Warner (Mac) 84618af7c7 import marching_cubes and mesh_surface_area 2013-08-30 12:36:30 -05:00
Josh Warner (Mac) 5eba5a42a7 FEAT: Full 3d anisotropic implementation of marching cubes 
Also includes surface area calculation algorithm from
generated mesh.
Convenient output to visualize with `mayavi.mlab`.
Efficient Cython implementation.
 2013-08-30 12:34:55 -05:00
Juan Nunez-Iglesias 55e42309b8 Merge pull request #712 from emmanuelle/gaussian_filter 
Add a wrapper around `scipy.ndimage.gaussian_filter` with useful default behaviors.
 2013-08-30 10:27:41 -07:00
Emmanuelle Gouillart 9795d3fad4 Gaussian filter function: changed the default value of multichannel 
Now we try to guess automatically whether the image is grayscale or RGB
 2013-08-29 23:14:30 +02:00