Josh Warner (Mac)
5cba69a4fa
test: add additional tests for 100% coverage of new peak_local_max
...
Also fix minor bug in label reordering.
2012-12-08 21:12:26 -06:00
Steven Silvester
71f505f71c
Used the new function names in example and test.
2012-12-08 15:03:11 -06:00
Steven Silvester
e91129de53
Renamed functions to equalize_hist/adapthist, with a deprecation warning for equalize
2012-12-08 14:53:34 -06:00
Steven Silvester
9ff0eef53d
Merge branch 'adapthist' of github.com:blink1073/scikits-image into adapthist
...
* 'adapthist' of github.com:blink1073/scikits-image:
Cleaned up adapthist func to use LAB for all RGB->required rest result change
Removed sys.path hack in test, fixed spelling of import in __init__.py
Translated clahe C code to python, added to list of contributors.
Passed all tests with full coverage, PEP8 and Pylint performed.
Improved support for color images using lab transform.
Replaced generic ACM license with the Graphics Gems IV license.
Pep8 fixes.
Added Notes to the docstring.
Tests pass and example works on build.
Initial commit of adapthist modifications.
Conflicts:
CONTRIBUTORS.txt
doc/examples/plot_equalize.py
skimage/exposure/_adapthist.py
skimage/exposure/tests/test_exposure.py
skimage/setup.py
2012-12-08 14:47:18 -06:00
Steven Silvester
08ef1e9b75
Rebased to master, incorporated view_as_blocks, cleaned up interpolate method and example
2012-12-08 14:29:36 -06:00
Steven Silvester
b8844beb79
Cleaned up adapthist func to use LAB for all RGB->required rest result change
2012-12-07 17:25:07 -06:00
Steven Silvester
7f86b0c400
Removed sys.path hack in test, fixed spelling of import in __init__.py
2012-12-07 17:25:06 -06:00
Steven Silvester
94af01cdbd
Translated clahe C code to python, added to list of contributors.
2012-12-07 17:25:04 -06:00
Steven Silvester
269929333b
Passed all tests with full coverage, PEP8 and Pylint performed.
2012-12-07 17:23:40 -06:00
Steven Silvester
c7c4db6e3c
Improved support for color images using lab transform.
2012-12-07 17:22:41 -06:00
Steven Silvester
20f4cee5da
Replaced generic ACM license with the Graphics Gems IV license.
2012-12-07 17:22:41 -06:00
Steven Silvester
715271bde9
Pep8 fixes.
2012-12-07 17:22:41 -06:00
Steven Silvester
ea850757c8
Added Notes to the docstring.
2012-12-07 17:22:41 -06:00
Steven Silvester
9eeb990898
Tests pass and example works on build.
2012-12-07 17:22:40 -06:00
Steven Silvester
c6d0acfdab
Initial commit of adapthist modifications.
2012-12-07 17:22:33 -06:00
Josh Warner (Mac)
4f68f1cd36
doc: fix and clarify peak_local_max docstring
2012-12-03 20:23:01 -06:00
Johannes Schönberger
50c0399aa7
Merge pull request #379 from cpsaltis/fix_rotate
...
Fix resize argument handling in rotate.
2012-12-03 14:48:52 -08:00
Stefan van der Walt
68c2ab205e
BUG: WindowsError not defined under Linux.
2012-12-03 08:49:35 -08:00
Christos Psaltis
298abe1ac0
Add test for resize option in rotate
2012-12-03 15:54:26 +02:00
Sergey Karayev
6953785eab
added rgb2lab test
2012-12-02 22:51:16 -08:00
Tony S Yu
bf28a38f6e
ENH: Make black the default boundary color for mark_boundaries.
...
This improves visibility in light-colored image regions. Note also that the new behavior matches the behavior from the 0.7 release.
2012-12-02 16:02:27 -05:00
Steven Silvester
2e1729a9fb
Cleaned up adapthist func to use LAB for all RGB->required rest result change
2012-12-01 23:46:52 -06:00
Christos Psaltis
22f94d8707
Fix resize argument handling in rotate.
...
It used to have exactly the opposite effect that it supposed to.
2012-12-01 12:30:40 +02:00
Andreas Mueller
b5d1e9f209
FIX quickshift nosetest with different xyz color conversion
2012-11-30 15:36:01 +01:00
Sergey Karayev
43eb33d26b
flake8 on colorconv.py and removed unneeded .copy()
2012-11-30 01:30:59 -08:00
Sergey Karayev
5108d8c346
Fixed RGB<->XYZ conversion.
...
Now correctly follows the algorithm from EasyRGB.
Also fixed a XYZ<->Lab conversion issue by adding
a .copy().
2012-11-29 12:06:01 -08:00
Juan Nunez-Iglesias
b906082034
Add testing functions for join and relabel
2012-11-28 12:48:13 +11:00
Juan Nunez-Iglesias
dc377970f5
Add functions to join and relabel segmentations
...
The join of two segmentations is the segmentation in which two voxels
are in the same segment if and only if they are in the same segment in
both input segmentations.
2012-11-28 12:22:14 +11:00
Josh Warner (Mac)
98ce475113
style: initialize out at beginning of function
...
* remove API compatibility comment
* remove unnecessary `del maskim`
2012-11-25 23:09:06 -06:00
Josh Warner (Mac)
45a91aa9c5
doc: deprecated string and docstring formatting fixes in is_local_maximum
2012-11-25 22:56:45 -06:00
Josh Warner (Mac)
d2262227d9
BUG - rank_order now imported.
...
Also changed (peak.py):
* Standardized documentation as requested.
* Removed `threshold` as an optional kwarg.
* Removed extra line break incorrect by PEP8 standards.
Also changed (watershed.py):
* Added @deprecated decorator and import statement
2012-11-24 17:24:14 -06:00
Luis Pedro Coelho
38f699471e
TST Remove unneeded test
...
Per stefanv's comment on github, this was testing functionality higher
up in skimage.io
2012-11-24 19:04:55 +00:00
Luis Pedro Coelho
10ce9b89ab
RFCT Use skimage.utils.convert for type conversion
2012-11-24 19:04:16 +00:00
Luis Pedro Coelho
6ebc43bad8
ENH Add imread io plugin
...
This relies on imread (https://github.com/luispedro/imread ) which
supports a few microscopy formats otherwise hard to read (LSM and
MetaMorph STK) as well as basic ones.
2012-11-24 19:04:01 +00:00
Josh Warner (Mac)
e7288f9140
BUG - Dtype conversion to Boolean in a new code path not included in current tests.
2012-11-20 01:17:42 -06:00
Josh Warner (Mac)
da5a2a8221
BUG - Now parsing all unique labels != 0 properly, and set threshold_rel=0 in is_local_maximum() wrapper.
2012-11-20 01:11:31 -06:00
Josh Warner (Mac)
233b368195
BUG - Fixed a bug where the image was not properly masked for each unique label.
2012-11-20 00:45:01 -06:00
Josh Warner (Mac)
33c9514062
BUG - Fixed a bug where, when indices = False, output was not Boolean.
2012-11-20 00:36:12 -06:00
Josh Warner (Mac)
226eaaff92
FEAT - Unified peak finder backend
...
Detailed changelist:
* Fully documented new API for peak_local_max()
* Removed commented-out old code for is_local_maximum()
* Added "See also" and "Notes" to is_local_maximum() redirecting to peak_local_max()
2012-11-20 00:12:47 -06:00
Josh Warner (Mac)
63b5c5a4a0
FEAT - combined API from is_local_maximum() into peak_local_max()
...
is_local_maximum() is a wrapper function for peak_local_max()
is_local_maximum() runs much faster (~20% of prior runtime, nearly = to peak_local_max())
All tests in .feature and .morphology subpackages pass as written with these changes.
Todo:
* Fully document API
* remove commented-out old algorithm in is_local_maximum()
* add new tests for full coverage of new, more complex peak_local_max()
2012-11-19 23:38:58 -06:00
Tony S Yu
13c61b9694
Merge pull request #361 from ahojnnes/hough-peaks
...
Add hough transform peak detection
2012-11-17 07:30:08 -08:00
Tony S Yu
9d653fec78
BUG: Clean up imports
2012-11-15 23:53:47 -05:00
Tony S Yu
0d411e21dc
STY: Refactor parts of LineTool to CanvasToolBase
2012-11-15 22:04:02 -05:00
Tony S Yu
d219a76f58
BUG: Fix blitting behavior in canvastools
2012-11-15 21:56:51 -05:00
Tony S Yu
5be5813070
STY: Reuse ThickLineTool in LineProfile
2012-11-15 00:16:19 -05:00
Tony S Yu
2ff3e78c52
BUG: Move callback connection to parent class
2012-11-15 00:16:19 -05:00
Tony S Yu
4f6f25efe9
ENH: Add canvastools subpckages with base class and line tools
2012-11-15 00:16:19 -05:00
Johannes Schönberger
80a9a5aba5
Apply numpy reference style to rank filter descriptions
2012-11-14 08:33:27 +01:00
Olivier Debeir
70f2b67ef7
fix: ref and test_otsu doc
2012-11-14 08:00:59 +01:00
Olivier Debeir
698d6ae13f
fix:< Py_ssize_t > 0 and & pop
2012-11-13 17:07:21 +01:00
Josh Warner (Mac)