Commit Graph

4757 Commits

Author SHA1 Message Date
Steven Silvester 5b8fd77b80 Merge pull request #1691 from juliusbierk/active-contour-model
New feature: Active contour model
2015-12-13 14:57:10 -06:00
Steven Silvester 683ecde2e1 Start deprecation of python 2.6 2015-12-12 20:27:21 -06:00
Juan Nunez-Iglesias 8b0d5113eb Merge pull request #1818 from blink1073/improve_downcast
Add support for casting from 64bit integers and use smart downcast
2015-12-13 10:54:39 +11:00
Juan Nunez-Iglesias 5eaf2010df Merge pull request #953 from syedTabish/Issue949
Update integral image to support nD images
2015-12-13 10:53:09 +11:00
Steven Silvester 4e00d45f68 Improve warning message 2015-12-12 17:07:36 -06:00
Steven Silvester f3965885e8 Fix failing test 2015-12-12 16:42:54 -06:00
Steven Silvester be7161d350 Add debug print 2015-12-12 16:20:26 -06:00
Steven Silvester a6f4419da4 Update failing tests 2015-12-12 14:20:38 -06:00
Steven Silvester f8d19ae7f0 Allow 64bit integer conversions and direct downcast 2015-12-12 13:40:32 -06:00
Steven Silvester 4b6db6425e Fix matplotlib backend
Add a debug print

Try with qtagg

Try with qt4agg

Comment out failing test for now
2015-12-11 10:49:11 -06:00
emmanuelle a16c530322 Some minor PEP8 issues 2015-12-11 17:21:17 +01:00
Juan Nunez-Iglesias 966e0fd685 Merge pull request #1770 from stefanv/list_regionprops
Only iterate over available region properties
2015-12-09 11:21:56 +11:00
Juan Nunez-Iglesias 1a05b130e8 Merge pull request #1449 from stefanv/clear_border_non_binary
Allow clear_border to operate on labeled images
2015-12-09 11:18:40 +11:00
Stefan van der Walt c133d5fd59 Merge pull request #1803 from JDWarner/mesh_orientation_cleanup
Guarantee correct mesh orientation from marching cubes
2015-12-07 20:13:58 -08:00
Josh Warner (Mac) 443f4cc0eb DOC: Correct docstring to correctly reflect defaults 2015-12-07 21:12:17 -07:00
emmanuelle bff2ce0bc4 Missing line 2015-12-08 12:27:24 +11:00
emmanuelle bb64e8cfcb Added test for slic segmentation: case where more segments than pixels
are asked for.
2015-12-08 12:27:24 +11:00
Gael Varoquaux 12c173908f BUX: in _slic.pyx slice can has steps=None
int(None) fails, and slice.steps == None is valid. It is equivalent to 1.
2015-12-08 12:27:24 +11:00
Josh Warner 29725068ce Guarantee correct mesh orientation from marching cubes 2015-12-06 00:28:18 -06:00
Josh Warner 6f016c9087 Merge pull request #1771 from noahtreb/fix-correct_mesh_orientation
FIX: Fix `correct_mesh_orientation` for spacing != (1,1,1)
2015-12-05 12:22:18 -06:00
Josh Warner f25b46c9bb Merge pull request #1799 from ahojnnes/linemodelnd
FIX: Fix LineModelND test cases and linalg.norm axis error
2015-12-05 11:48:26 -06:00
Steven Silvester 219d08ad7b Fix errant docstring 2015-12-05 10:35:11 -06:00
Johannes Schönberger 50f2a0b4ed Create helper function to compute norm along axis 2015-12-04 23:11:19 -05:00
Johannes Schönberger f88694e5a3 Fix LineModelND test cases 2015-12-04 23:05:59 -05:00
Johannes Schönberger 198ce0250b Merge pull request #1764 from glemaitre/geometric_mean
Geometric mean
2015-12-04 18:02:44 -05:00
Johannes Schönberger 99484e3a77 Merge pull request #1795 from kevin-keraudren/ransac-linemodel3D
Adding LineModel3D for RANSAC, unit test and example.
2015-12-04 17:58:52 -05:00
Kevin Keraudren 0bdf4251c6 documentation updates; added "3D" to example title 2015-12-04 22:25:13 +00:00
Guillaume Lemaitre 0c1fc76f4b Update the reference 2015-12-04 19:27:44 +01:00
Guillaume Lemaitre 54043de4b4 Change the import of round function to be compatible with visual studio compiler 2015-12-04 19:26:38 +01:00
Guillaume Lemaitre 3a2acb2adf Update the documentation with spelling error 2015-12-04 19:26:37 +01:00
Guillaume Lemaitre 4bc1c587ed Add local geometric mean filter
Add the filter in cython with a specific kernnel.
The implementatio is based on the log-average method.
The test were added the npz.
2015-12-04 19:26:37 +01:00
Kevin Keraudren 6f9a55c987 added deprecation warning for LineModel and added note in TODO.txt 2015-12-04 08:48:08 +00:00
Kevin Keraudren 61b7c20e03 cleaned tests and documentation, added deprecation note in doc for LineModel. 2015-12-03 22:16:56 +00:00
Kevin Keraudren 6a2961fdee we now have the old LineModel with params (dist, theta), and the new LineModelND with params (origin, direction). 2015-12-03 22:03:10 +00:00
Kevin Keraudren 040a53456d Merged LineModel3D with LineModel in order to form a unified model.
- model.params holds the legacy params (2D representation),
 - model.new_params holds the true ND line representation.

The proposed LineModel behaves identically as the implementation in master in the 2D case. In the 3D case, it behaves similarly to the previously proposed LineModel3D, as long as new_params is used instead of params. This implementation thus takes advantage that the 2D case is a special case of the ND general model.
2015-12-02 08:58:16 +00:00
Kshitij Saraogi 428db535cd added support for boolean types in segementation 2015-12-02 10:57:07 +05:30
Kevin Keraudren 5bb206233d fixed typo and added blank line 2015-12-01 15:18:57 +00:00
Kevin Keraudren c1c0d18ba1 reformatting code to wrap at 80 characters per line 2015-12-01 14:32:25 +00:00
Julius Bier Kirkegaard 320977c8b9 Fixed doctest problem 2015-12-01 12:42:12 +00:00
Kevin Keraudren a606a53875 Adding LineModel3D for RANSAC, unit test and example. 2015-12-01 12:17:22 +00:00
Julius Bier Kirekgaard ea33891c60 Skip doctest 2015-11-29 14:15:10 +00:00
Juan Nunez-Iglesias 3b525987f5 Merge pull request #1787 from ahojnnes/rpropsfix
Various fixes and improvements
2015-11-19 15:16:16 +11:00
Johannes Schönberger ba3c0c02cd Fix circular import loop 2015-11-18 09:02:02 -05:00
Johannes Schönberger 9d3a7b4ecd Remove redundant type conversion 2015-11-18 08:58:01 -05:00
Juan Nunez-Iglesias 015c57c307 Merge pull request #1689 from oew1v07/remove_small_holes
Remove small holes
2015-11-18 22:36:33 +11:00
Johannes Schönberger a63b746e6c Move import test to top of function and import outside of function 2015-11-17 10:25:05 -05:00
Johannes Schönberger 6e644c4aa6 Remove single author from header, fix typo
Functions in this file are from multiple authors, the original
author is attributed in the contributors section and the Git history.
2015-11-17 10:22:44 -05:00
Johannes Schönberger 1278b02161 Fix circular import between regionprops and convex_hull_image 2015-11-17 10:19:09 -05:00
Johannes Schönberger 3437eb89b0 Fix deprecated filter module import 2015-11-17 10:09:42 -05:00
Johannes Schönberger 1a598be98e Fix region props deprecation problem with label function 2015-11-17 10:07:29 -05:00