984e542425
Use missing memoryviews for bilateral kernels
2013-07-12 23:16:08 +02:00
7fa8e70495
Fix README for full 16bit support
2013-07-12 23:16:08 +02:00
d1fb013788
Fix test cases for full 16bit support
2013-07-12 23:16:08 +02:00
e9fcdc4a56
Fix attack-release border initialization
2013-07-12 23:16:08 +02:00
ccd902fcb4
Extend bitdepth from 12bit to full 16bit
2013-07-12 23:16:08 +02:00
c9e81053f7
Capitalize parameter description in doc string
2013-07-12 23:16:08 +02:00
aa973aeff2
Fix wrong module name
2013-07-12 23:16:08 +02:00
cd7959dd08
Fix styling of some comments
2013-07-12 23:16:08 +02:00
ea8111d0e3
Use typed memoryviews for diff array
2013-07-12 23:16:08 +02:00
d251fd8891
Improve code layout and styling
2013-07-12 23:16:08 +02:00
2641df3497
Use typed memoryviews in rank filter package
2013-07-12 23:16:08 +02:00
9a17db19da
Refactor rank filter package for consistent naming
2013-07-12 23:16:07 +02:00
4d307f5315
iradon_sart: Fix docstring typo.
2013-07-09 11:44:28 +02:00
1cc42bd943
iradon_sart: Reformat references.
2013-07-09 11:44:03 +02:00
18a06a0add
iradon_sart: Format docs correctly.
2013-07-08 14:50:06 +02:00
bea50aa608
iradon: use util.pad for sinogram padding.
2013-07-06 20:55:54 +02:00
b3746b9090
iradon: Cleanup by locating related code in one place.
2013-07-06 20:55:54 +02:00
643a1bc1f5
iradon: Add test for cubic interpolation.
2013-07-06 20:55:53 +02:00
b90ba783ef
iradon: Only allow interpolation methods working well.
...
Of the interpolation methods provided by scipy.interpolate.interp1d,
only cubic has been found to work well with the tests in skimage (other
methods are either identical to linear or nearest, or they produce bad
reconstructions).
2013-07-06 20:55:53 +02:00
2be327815e
radon: Use numpy.interp/scipy.interpolate.
...
Scipy supports all interpolation kinds (nearest, linear) we need, while
numpy supports only linear interpolation. The numpy interpolation is
substantially faster, so this is used even though it complicates the
code slightly.
2013-07-06 20:55:53 +02:00
5955e4e612
iradon: Reduce code duplication.
2013-07-06 20:55:53 +02:00
ac460a9777
iradon: Use util.pad for array padding.
...
This depends on util.pad accepting 0s in pad_width, which has a proposed
solution in gh-634.
2013-07-06 20:55:53 +02:00
237fb989b0
radon: Use util.pad for array padding.
2013-07-06 20:55:53 +02:00
6edd707a1b
Merge pull request #637 from sciunto/minorfix
...
STYLE : PEP8 + import fix in hough_transform tests
2013-07-06 11:06:48 -07:00
15ed7bdf59
Merge pull request #584 from josteinbf/iradon-algebraic
...
SART algorithm for tomography reconstruction
2013-07-06 10:24:24 -07:00
cf3efba3c1
use previous import
2013-07-06 16:12:09 +02:00
de9d2662b1
MIN: fix pep8
2013-07-06 14:45:54 +02:00
f316abbfbe
DOC: add doctrings
2013-07-06 14:34:55 +02:00
e74b971335
erode & dilate -> private functions
2013-07-06 14:30:17 +02:00
2dfeab83df
PEP8 + import
2013-07-06 13:49:01 +02:00
794a4d7dae
arraypad: allow padding with zero entries (i.e. no padding).
2013-07-05 14:29:09 +02:00
3cdfeccc7a
iradon_sart: flip signs to reflect changes to radon.
...
The changes to radon were introduced in gh-596.
2013-07-05 13:14:39 +02:00
af47941435
iradon_sart: fix comment spelling.
2013-07-05 13:14:39 +02:00
f2790d658c
iradon_sart: redefine projection center.
...
This reflects the bugfixes related to issue gh-592 implemented in
gh-596.
2013-07-05 13:14:39 +02:00
06857d3b92
Radon tests: Check the correct error metric.
2013-07-05 13:14:39 +02:00
a4870242b6
iradon_sart: Test clip functionality and add a test for it.
2013-07-05 13:14:39 +02:00
dde4288865
test_radon_transform: Style fixes.
2013-07-05 13:14:39 +02:00
266b202226
iradon_sart: Style fixes.
2013-07-05 13:14:38 +02:00
116e1dd571
iradon_sart: Also test accuracy with a missing wedge.
2013-07-05 13:14:38 +02:00
ace07a0b18
iradon_sart: Add test for order_angles_golden_ratio.
2013-07-05 13:14:38 +02:00
2082b57e41
iradon_sart: Order angles using a golden ratio approach.
2013-07-05 13:14:38 +02:00
dcd31c1882
radon_transform: Declare encoding.
2013-07-05 13:14:38 +02:00
8d4b1e6710
iradon_sart: Add Kaczmarz reference and reformat citations.
2013-07-05 13:14:38 +02:00
89f227c5ff
iradon_sart: Remove needless memoryview/ndarray conversion.
...
image_update is not manipulated in sart_projection_update and the
conversion to memoryview will happen when it is passed to the
subroutines anyway.
2013-07-05 13:14:38 +02:00
5baaf78564
iradon_sart: Reduce code duplication in interpolation.
2013-07-05 13:14:38 +02:00
91aeb658dd
iradon_sart's cython exts: Use typed memoryviews, not ndarrays.
2013-07-05 13:14:38 +02:00
c977c5974d
iradon_sart: Improve argument checking.
2013-07-05 13:14:38 +02:00
59bdb24c92
iradon_sart: Clean up cython code to minimize python calls.
2013-07-05 13:14:38 +02:00
1b620a0a12
Tests for iradon_sart: Robust path handling.
2013-07-05 13:14:38 +02:00
94eba1c911
iradon_sart: Clarify how constants are chosen.
2013-07-05 13:14:38 +02:00
Johannes Schönberger