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3,049 Commits 8 Branches 45 Tags
a41d74caa426beaa32247ecc4bbdd4db1c4f8a88
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1538 Commits

Author SHA1 Message Date
Stefan van der Walt a41d74caa4 Merge pull request #441 from spotter/color_deconv 
ENH: Adding color deconvolution for immunohistochemical images.
 2013-03-14 06:04:22 -07:00
Xavier Moles Lopez d0a15a7cf9 FIX: Example in combine_stains docstring. 2013-03-13 15:14:39 +01:00
Stefan van der Walt bad3915d2a Merge pull request #463 from ahojnnes/pdf-docs 
DOC: Fix LaTeX documentation.
 2013-03-13 07:02:38 -07:00
Xavier Moles Lopez b75776cc2e ENH: Updated stain separation function docstrings and added matrices to __all__ 2013-03-13 14:35:16 +01:00
Johannes Schönberger 16863535eb Re-enable plots in doc strings and generate PDF images for them 2013-03-13 10:59:26 +01:00
spotter 74acdc9fa9 FIX: changed unicode dash in docstrings. 2013-03-12 17:09:17 +01:00
spotter 6f7158046f FIX: combine_stains docstring. 2013-03-12 16:41:02 +01:00
spotter b3e557b550 FIX: using the new stain separation functions for the special case of hed. 2013-03-12 16:19:51 +01:00
spotter c43986d6d6 ENH: Adding tests for new stain separation functions. 2013-03-12 16:15:41 +01:00
spotter f48097c5ca FIX: fixed docstrings. ENH: Added new stain separation matrices. 2013-03-12 16:06:32 +01:00
spotter 20f27345c3 FIX: rgb2hed and hed2rgb can work with both signed and unsigned image. 2013-03-12 14:22:53 +01:00
Johannes Schönberger 0324737c47 Fix some doc strings for latex docs 2013-03-12 09:39:42 +01:00
Johannes Schönberger 332c21f979 Make deprecation warning in doc string bold 2013-03-12 07:29:39 +01:00
Johannes Schönberger a0d9d3f213 Use double instead of single quotes for doc string 2013-03-12 07:28:15 +01:00
Johannes Schönberger 0cb0fee339 Remove duplicate code for alternative function 2013-03-11 23:21:52 +01:00
Johannes Schönberger 483ebae0c0 Change deprecated decorator to display warning in doc string 2013-03-11 23:18:54 +01:00
Juan Nunez-Iglesias b306f9b70f Revert remove_small_objects to raise TypeError 2013-03-10 19:23:04 +11:00
spotter 5b25e7e961 FIX: Replaced non-ascii double quotes in Ruifrok reference. 2013-03-09 13:23:36 +01:00
spotter 7c371e1662 FIX: img_as_ubyte function threw ValueError due to floating point errors in hed2rgb function. 
Clipping the output of the hed2rgb function between 0 and 1 seems to correct
the bug without affecting the conversion quality.
 2013-03-08 12:58:22 +01:00
Stefan van der Walt d7d87c9461 Merge pull request #390 from tonysyu/canvastools 
ENH: Major overhaul of canvastools.
 2013-03-07 23:18:30 -08:00
spotter 7439fe96e8 FIX: Testing for ubyte and float images. Input dtypes are converted beforehand. 2013-03-07 00:14:06 +01:00
Christoph Gohlke 45f53c9e3a Fix MSVC error C2036: 'void *' : unknown size 2013-03-06 10:09:59 -08:00
Johannes Schönberger 387c72b018 Remove colon as multi-line comment symbol 2013-03-06 16:43:41 +01:00
Johannes Schönberger 44350f56c9 Fix vectorized_ops for bento 2013-03-06 16:42:18 +01:00
Thouis (Ray) Jones e6ee2c0db6 BUG: not all histogram memory was aligned correctly 2013-03-05 18:32:09 -05:00
Christoph Gohlke 211d64644f Use np.intp type for indices 2013-03-04 22:45:46 -08:00
Christoph Gohlke 97fd434314 Fix ValueError: Buffer dtype mismatch on win-amd64 2013-03-04 17:33:15 -08:00
Christoph Gohlke 7ca08cf763 Fix ValueError: Buffer dtype mismatch on win-amd64 2013-03-04 17:32:22 -08:00
Christoph Gohlke dda83fdb55 Fix ValueError: Buffer dtype mismatch on win-amd64 2013-03-04 17:30:40 -08:00
Christoph Gohlke 19e938a3de Fix ValueError: Buffer dtype mismatch on win-amd64 2013-03-04 17:29:44 -08:00
Stefan van der Walt f3924da90b DOC: Fix typo in remove_small_objects docstring. 2013-03-04 18:36:32 +02:00
Stefan van der Walt 9cb354e9d0 Merge pull request #450 from ahojnnes/hough-circle 
RF: Hough circle improvements.
 2013-03-04 08:09:08 -08:00
Johannes Schönberger 25f16f4a82 Merge pull request #452 from stefanv/jni-morphology-functions 
STY: Minor cleanup on small object removal.
 2013-03-04 08:03:34 -08:00
Johannes Schönberger 4925205082 Improve performance of normalization 2013-03-04 16:26:06 +01:00
Johannes Schönberger eee2342814 Merge pull request #446 from jni/morphology-functions 
Morphology functions
 2013-03-04 06:09:40 -08:00
Johannes Schönberger 2e3f82e9d9 Remove unnecessary statement breaks 2013-03-04 15:01:03 +01:00
Johannes Schönberger dec104e9ff Improve performance and usage of data types of hough circle transformation 2013-03-04 15:00:37 +01:00
Xavier Moles Lopez 0a6b72bfe4 FIX: Fixed test_hed_rgb_roundtrip. 2013-03-04 12:15:35 +01:00
Xavier Moles Lopez 7f5b331f22 FIX: import rgb2hed and hed2rgb in the test_colorconv script. 2013-03-04 12:04:44 +01:00
Xavier Moles Lopez e4629ed856 FIX: modified color.data.ihc docstring. 2013-03-04 11:45:58 +01:00
Xavier Moles Lopez 40e7aee4de FIX: Ran autopep8 on colorconv.py FIX: modified color.data.ihc function FIX: smaller ihc.jpg image 2013-03-04 10:50:17 +01:00
Stefan van der Walt dae9b7adfd STY: Minor cleanup. 2013-03-04 11:30:19 +02:00
Juan Nunez-Iglesias 3249faf308 Add specific error messages and exceptions 2013-03-04 16:54:29 +11:00
Stefan van der Walt 0b97d48742 Merge pull request #444 from jmargeta/MSVC_uint16_fix 
BUG: Fixing MSVC build by adding appropriate typedefs for uint16_t.
 2013-03-03 20:20:45 -08:00
Jan Margeta 3869d1ef8a Removing unnecessary typedefs for uint16_t in MSVC build 2013-03-03 22:45:09 +01:00
Johannes Schönberger dc83c64d44 Change data type of index variables 2013-03-03 15:37:45 +01:00
Juan Nunez-Iglesias 6b9ecd80b9 Add raise and labeled image tests 2013-03-04 01:32:05 +11:00
Juan Nunez-Iglesias b07f7fd9bd Rename function to remove_small_objects 2013-03-04 01:32:05 +11:00
Juan Nunez-Iglesias d6c5ba38ef Improve docstring for remove_small_connected_components 
- Explain behavior if input is of int type.
- Add `Raises` section for possible errors.
- Remove explicit numpy import from example.
 2013-03-04 01:32:05 +11:00
Juan Nunez-Iglesias 5222fb5ff7 Add tests for remove_small_connected_components 2013-03-04 01:32:05 +11:00