bae672f34b
Do not try and save signed integer output, improved signed checks for tif.
2014-10-09 20:18:43 -05:00
047650ce38
Fix reference citation
2014-10-09 20:18:43 -05:00
be279de2fa
Fix handling of temp file removal
2014-10-09 20:18:43 -05:00
fb9f7e7346
Properly handle all image types for PNG, beef up docs
2014-10-09 20:18:43 -05:00
9b768dc681
Add references in docstrings
2014-10-09 20:18:43 -05:00
74c87b583d
Clean up imsave behavior and beef up docstring
2014-10-09 20:18:43 -05:00
8396d59268
Reinstate tifffile test
2014-10-09 20:18:43 -05:00
ee755c6c0b
Remove temporary file and clean up imports
2014-10-09 20:18:43 -05:00
fa5a575743
Reinstate tifffile_plugin for backwards compatibility
2014-10-09 20:18:43 -05:00
d9e169c518
Fix PIL tests, move helpers to _shared, fix widgets test
2014-10-09 20:18:21 -05:00
199c3da307
Clean up tests and add to bento.info.
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Remove "no plugin" test because we will always have a plugin.
Fix handling of bools in ubyte check
Fix integration of tifffile.c
Clean up new tests.
Fix _tifffile import and add to bento.info
Add tifffile.py and fix pil_plugin import
Add tifffile tests to test_pil and remove PIL import checks
2014-10-09 20:18:20 -05:00
2e47ca2d67
Add tifffile.c and associated build target.
2014-10-09 20:18:20 -05:00
c5b2834084
Remove old tifffile plugin in favor of using it in PIL plugin.
2014-10-09 20:18:20 -05:00
8049c642af
Add tests for new behavior.
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Add tests for new behavior
Fix utils import and make io.tests a package
2014-10-09 20:18:20 -05:00
7374f4ac53
Add tifffile.py and its license.
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Add use of tifffile and its license
Actually add the tifffile file and LICENSE
2014-10-09 20:18:20 -05:00
5f769cb4bf
Fix handling of non-uint8 images for PIL imsave.
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Fix handling of non-uint8 imags for PIL imsave.
Update build requirements and documentation
Reorganized dependencies in DEPENDS.txt.
Fix install_requires string formatting
Use img_as_ubyte instead of the previous hack
Add to the docstring notes.
Add to docstring notes
Fix errant changes
Add support for tif floating point and 16bit files
Handle case where format_str is None
Add note about 2D TIFF file support
Add handling for uint16 and integer types.
2014-10-09 20:18:20 -05:00
d16904cfbc
Merge pull request #1175 from blink1073/update-setup
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Update build requirements and instructions
2014-10-09 18:27:22 +02:00
12dab41c39
CLN: Correct dtype typo
2014-10-07 18:05:57 +05:30
39267d103c
CLN: Improve performance of disk and diamond selems
2014-10-07 17:55:44 +05:30
ec55adf4ea
Add pillow to requirements (but allow for PIL)
2014-10-05 10:03:34 -05:00
e6270c52b6
Do not require jpg support from io plugins in novice test
2014-10-05 07:07:19 -05:00
9ea43d777b
Avoid type incompatibility warnings
2014-10-04 21:41:35 -05:00
124db3274f
Fix error in viewer test when mpl is present but not qt.
2014-10-04 15:58:28 -05:00
669b0bf311
Merge pull request #1176 from ahojnnes/ransac
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Add stop_probability for RANSAC
2014-10-02 23:56:01 +02:00
06fd017828
Improve description of stop_probability
2014-10-01 15:30:27 -04:00
c594416b78
Fix stop_probability description
2014-09-30 20:55:35 -04:00
15475516d9
Remove extra space
2014-09-30 20:49:23 -04:00
28df57edc8
Merge pull request #1130 from capitanbatata/more-illuminants
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Add more illuminants to color conversion
2014-10-01 01:46:16 +02:00
e5e83538ca
Merge pull request #1183 from jni/warn-single-labels
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Warn when single int label of 1 is passed to remove_small_objects
2014-09-30 08:18:33 -04:00
d1d7af0efd
Merge pull request #1180 from stefanv/doc/widget_callback
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Add more complete documentation for widget callback
2014-09-30 04:26:47 -05:00
b44d4f7f45
Added Johannes' comments.
2014-09-30 08:32:48 +02:00
8711c74533
Test type warning from remove_small_objects
2014-09-30 15:04:28 +10:00
a2def31fca
Warn users of remove_small_objects about type
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When input type is `int`, we assume that the image is pre-labeled.
However, when only 0 and 1 are present, it may be that the user expects
us to treat it as a binary image. We don't, but now issue a warning
that they might want to use a bool image.
Fixes #1178 .
2014-09-30 14:51:00 +10:00
ea00067b0e
Fix class names
2014-09-30 06:22:24 +02:00
63c92537b1
Also add handle style to ThickLineTool
2014-09-30 06:18:03 +02:00
8a914e55f1
Invoke linetool with properties to increase coverage
2014-09-29 22:28:42 +02:00
f7ee2c28a6
Add more complete documentation for widget callback
2014-09-29 22:25:37 +02:00
b4a6571715
Allow modification of LineTool handle style
2014-09-29 17:13:07 +02:00
eba3d75fa9
Add sanity checks for input parameters
2014-09-28 18:43:32 -04:00
be5d4b19ec
Add stop_probability to RANSAC
2014-09-28 18:38:35 -04:00
d0fb18fded
Merge pull request #1123 from stefanv/pnpoly
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Expose point_in_poly and move to measure module
2014-09-28 09:20:29 -04:00
91f1d80745
Fix typos and grammatical errors in uft.py docs
2014-09-26 19:54:15 +10:00
141d459b71
Fix small errors in the documentation
2014-09-26 19:21:59 +10:00
2b7bf24c1f
Add shape fix for deconvolution functions
2014-09-26 19:13:33 +10:00
d50afed18e
Add test for preserving image shape in deconv
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I can confirm that this test does not pass in the current master.
2014-09-26 19:13:33 +10:00
214613c2a8
Run restoration test suite when run as main
2014-09-26 19:13:33 +10:00
dd96b2483b
Merge pull request #1169 from stefanv/doc/denoise_opt_param
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Fix incorrectly documented non-optional argument
2014-09-22 12:39:45 -04:00
5ba4b7ccd3
Expose point_in_poly and move to measure module
2014-09-22 17:56:18 +02:00
343d1d2ec3
Fix incorrectly documented non-optional argument
2014-09-22 17:54:56 +02:00
6cac05a924
Merge pull request #1163 from blink1073/implement_assert_nD_array
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Implement assert_nD in filter and feature packages
2014-09-23 01:13:14 +10:00
Steven Silvester