45a91aa9c5
doc: deprecated string and docstring formatting fixes in is_local_maximum
2012-11-25 22:56:45 -06:00
d2262227d9
BUG - rank_order now imported.
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Also changed (peak.py):
* Standardized documentation as requested.
* Removed `threshold` as an optional kwarg.
* Removed extra line break incorrect by PEP8 standards.
Also changed (watershed.py):
* Added @deprecated decorator and import statement
2012-11-24 17:24:14 -06:00
da5a2a8221
BUG - Now parsing all unique labels != 0 properly, and set threshold_rel=0 in is_local_maximum() wrapper.
2012-11-20 01:11:31 -06:00
226eaaff92
FEAT - Unified peak finder backend
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Detailed changelist:
* Fully documented new API for peak_local_max()
* Removed commented-out old code for is_local_maximum()
* Added "See also" and "Notes" to is_local_maximum() redirecting to peak_local_max()
2012-11-20 00:12:47 -06:00
63b5c5a4a0
FEAT - combined API from is_local_maximum() into peak_local_max()
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is_local_maximum() is a wrapper function for peak_local_max()
is_local_maximum() runs much faster (~20% of prior runtime, nearly = to peak_local_max())
All tests in .feature and .morphology subpackages pass as written with these changes.
Todo:
* Fully document API
* remove commented-out old algorithm in is_local_maximum()
* add new tests for full coverage of new, more complex peak_local_max()
2012-11-19 23:38:58 -06:00
c17ffe6c32
Merge pull request #351 from ahojnnes/test-coverage
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Test coverage
2012-10-09 14:51:23 -07:00
9b5cb1ca8a
Merge pull request #360 from tonysyu/fix-doctest-imports
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DOC: Add imports to doctests to fix errors
2012-10-08 22:50:38 -07:00
ab2411cd19
DOC: Add imports to doctests to fix errors
2012-10-08 20:30:33 -04:00
b4b090271d
complete singularization of scikit-image
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I've updated references in the code and documentation to the new name.
2012-10-08 16:29:55 -07:00
0ab93bbf36
Remove redundant dtype conversion
2012-10-06 21:54:12 +02:00
48572fd0a3
Remove obsolete license note as code has been refactored
2012-10-06 21:52:15 +02:00
6c59e04714
MISC remove unused imports, some pep8 corrections.
2012-09-27 20:01:45 +01:00
538ce329a5
DOC: fix numpy dtype print out.
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This fix may be very dependent on numpy version since print out has change over time.
2012-09-11 23:47:18 -04:00
56b1476789
Add test case for non-square images
2012-09-11 20:27:18 +02:00
f478b6a397
Fix bug in binary dilation and test case
2012-09-11 20:11:55 +02:00
b1d99be735
Fix bug in grey erosion and dilation
2012-09-11 09:09:10 +02:00
84ac91927d
DOC: Fix citation syntax
2012-09-02 18:03:55 -04:00
8b15656feb
Change import to silence import errors in docs.
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`import skimage` in submodules seems to cause issues with Sphinx autodocs. (Maybe some sort of circular import issue.) Note the `ImportErrors` fixed by this commit don't actually cause sphinx build errors; Sphinx seems to capture the errors, but it's annoyingly noisy, nonetheless.
2012-09-02 12:23:52 -04:00
aa08e8a559
Fix for predefined output array
2012-09-02 13:41:25 +02:00
2c37c70ca3
Fix support for predefined output array
2012-09-02 13:35:12 +02:00
373b3293ee
Use numpy testing functions
2012-09-02 13:28:07 +02:00
de47332bd2
Add fast morphological operations for binary images
2012-09-02 13:25:52 +02:00
2842515dc3
Improve doc string layout
2012-09-02 10:34:09 +02:00
224fcb5d01
Convert selem to uint8
2012-09-02 09:58:02 +02:00
a5fe574bd9
Remove unused imports and add missing types
2012-09-01 14:57:56 +02:00
b05c062d24
Refactor erosion and dilation for better performance
2012-09-01 14:54:17 +02:00
0644026250
Fixed two tests that were failing because of draw imports
2012-08-27 12:04:30 +02:00
7d8bc48378
ENH: Change assert statement for better error output
2012-08-26 16:36:28 -04:00
8084faf1f6
BUG: Fix division error for Python 3
2012-08-26 16:33:25 -04:00
69207c003b
BUG: fix import of rank_order
2012-08-25 14:06:20 -04:00
e350db23a2
Change reconstruction to support Cython 0.15.
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This removes use of Cython's typed memoryviews.
This reverts commit b5d9106966
2012-08-25 14:04:48 -04:00
ce423e169e
Merge pull request #257 from ahojnnes/shared
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ENH: Add shared package.
2012-08-25 10:35:29 -07:00
544fec7560
Merge pull request #215 from tonysyu/morph-reconstruction
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ENH: Add morphological reconstruction.
2012-08-25 07:42:36 -07:00
945349f963
DOC: Improve description of reconstruction
2012-08-25 08:48:03 -04:00
878554ac35
Fix indentation
2012-08-21 15:45:18 +02:00
c471d475eb
Refactor pnpoly function in Cython and add to shared package
2012-08-21 15:43:26 +02:00
1c3aeec2a8
BUG: Remove uses of xrange for py3 compatibility.
2012-08-20 15:25:40 -07:00
39569e8f9e
Merge pull request #256 from NeilYager/skeleton_fix
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BUG: Fix skeletonize LUT.
2012-08-20 14:50:51 -07:00
b4fa79d6dd
Merge pull request #206 from amueller/felsenzwalb
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ENH: MRG Segmentation algorithms.
2012-08-20 14:43:33 -07:00
d7d1faec46
Fix bug in skeletonize LUT
2012-08-20 21:56:10 +01:00
682f064f86
DOC: Fix docstring to match rank order.
2012-08-19 16:23:14 -04:00
b5d9106966
ENH: Use Cython data types instead of Numpy dtypes.
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Conversion to Memoryviews didn't improve performance, unfortunately. Minor slow-down of 5--10%.
2012-08-19 11:56:16 -04:00
b614b34eab
ENH: Add test of reconstruction by erosion.
2012-08-18 23:20:49 -04:00
79fca0e20d
DOC: Reorder docstring sections.
2012-08-18 21:54:06 -04:00
ab7626da3d
STY: Rename variables for clarity.
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In particular, it wasn't clear whether `image` was the seed image or the mask image rnd `values` was used to refer to both image intensity values and their rank-order.
2012-08-18 21:41:01 -04:00
7a56a7f35e
DOC: Clarify code comments and docstring
2012-08-18 18:04:01 -04:00
969772c036
ENH: Add reconstruction by erosion.
2012-08-18 17:59:44 -04:00
29c84a8a7b
STY: Rename returned image to distinguish input from output.
2012-08-17 23:02:08 -04:00
33a19a8c7b
DOC: add comments to clarify algorithm
2012-08-17 22:48:02 -04:00
90e61e22ae
Merge pull request #240 from tonysyu/rename-duplicates
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BUG: Rename modules with duplicate function names.
2012-08-16 23:01:48 -07:00
Josh Warner (Mac)