Commit Graph

531 Commits

Author SHA1 Message Date
Steven Silvester 5ccdd36bc3 Remove imshow from PIL plugin
Do not provide imshow, show in PIL plugin to prevent conflicts

Make the sphinx install quiet

Fix local linka

Fix literal blocks

Fix another local link

Fix richardson-lucy link

Assert world dominance
2015-02-07 16:40:44 -06:00
Stefan van der Walt 13f9b89023 Merge pull request #1319 from ahojnnes/geom-est
Improve conditioning of geometric transformations
2015-01-28 13:31:25 -08:00
Johannes Schönberger ee5c6fbeb2 Use relative imports in skimage files 2015-01-22 07:36:48 -05:00
Johannes Schönberger 4c781cf5c0 Fix doc string 2015-01-22 07:23:54 -05:00
Johannes Schönberger ad85dfabd5 Disable catch of all warnings, return nan params instead 2015-01-22 06:49:16 -05:00
Johannes Schönberger 91c697c5f7 Handle special case of 1 pixel image 2015-01-21 14:10:09 -05:00
Johannes Schönberger 5dbb6e3257 Improve conditioning of silimarity transform design matrix 2015-01-21 14:10:09 -05:00
Johannes Schönberger 983919404f Improve conditioning of homography design matrix 2015-01-21 14:10:09 -05:00
Johannes Schönberger 2f60de7362 Create function to center and normalize image points 2015-01-21 14:10:09 -05:00
Juan Nunez-Iglesias 7b5dd3b700 Merge pull request #1313 from blink1073/suppress-test-warnings
Handle expected test warnings.
2014-12-27 14:26:59 +11:00
Steven Silvester f898bd0209 Style fixes 2014-12-26 11:26:30 -06:00
Johannes Schönberger 0c2773b9e4 Use typed memoryviews 2014-12-26 11:08:05 +01:00
Steven Silvester 2d3ada19e5 Allow for no exceptions to be raised and cleanup
Allow for no exceptions to be raised

Add some helpful comments

Remove doctest skips

Remove TODO note

Cleanup and skip failing doctest
2014-12-23 16:51:18 -06:00
Steven Silvester c0a0490eed Fix handling of multiple warnings and update tests
Fix handling of multiple warnings

Update all test __init__ files

Update segmentation pkg

Update the color pkg

Update the exposure pkg

Update the filters pkg

Update the io pkg

Update the measure pkg

Update morphology package

Restructure test setup function

Add expected_warnings to __all__

Update restoration pkg.

Remove explicit filter check since it is done elsewhere

Fix the image test helpers

Update the transform pkg

Fix util pkg

Update viewer pkg
2014-12-23 16:51:06 -06:00
Steven Silvester 4680f30466 Add a test setup helper function
Add a function to set up a skimage test

Switch to new test helper function

Import local packages that raise warnings in test setup function

More fixes to doctests

Fix regionprops doc test

Try and fix the test_rank failure.

Remove no longer needed RectangleSelector shim

Skip more doctests in _regionprops

Try importing another scipy subpackage
2014-12-23 16:49:20 -06:00
Steven Silvester f72882fbd2 Import scipy before turning on warnings 2014-12-23 16:49:19 -06:00
Steven Silvester 542cd4fabe Fix some doctest warnings
Fix doctest errors

Suppress warnings when importing scipy.ndimage for the first time
2014-12-23 16:49:01 -06:00
Steven Silvester 2756358f3c Clean up PIL plugin and handle more warnings
Use the pil plugin to load data files

Fix install_requires string formatting

Dead end commit

Make all tools executable

Remove debug print

Suppress PIL resourcewarnings

Handle a few more warnings
2014-12-23 16:48:38 -06:00
Steven Silvester 0debedd82c Handle more warnings and reset io plugins as needed
Reset plugins prior to running collections test

Handle warnings in morphology pkg

Add __init__ for morpohology tests

Handle warnings for novice pkg

Handle warnings for restoration pkg

Handle warnings for segmentation pkg

Handle warnings for _shared pkg

Handle warnings for transform pkg

Handle warnings for util pkg

Handle warnings in viewer module
2014-12-23 16:48:16 -06:00
Johannes Schönberger e38ed91c24 Add missing return value description 2014-12-23 15:22:22 +01:00
Johannes Schönberger e070274355 Add more description to doc string of helper function 2014-12-23 15:20:46 +01:00
Johannes Schönberger 0d2c5def06 Use in-place operation for clipping 2014-12-23 13:51:25 +01:00
Johannes Schönberger 515ec9fe98 Rename keep_range to preserve_range, fix test cases 2014-12-22 20:28:00 +01:00
Johannes Schönberger e35f9c303e Remove test for invalid shape 2014-12-22 20:28:00 +01:00
Johannes Schönberger 313032d487 Make sure 1x1 images are 2-D 2014-12-22 20:28:00 +01:00
Johannes Schönberger 3e881fe35c Create helper function for image conversion 2014-12-22 20:28:00 +01:00
Johannes Schönberger dedcee6543 Fix keep_range and add test cases 2014-12-22 20:28:00 +01:00
Johannes Schönberger 0779167477 Introduce parameter to keep range of values 2014-12-22 20:28:00 +01:00
Johannes Schönberger 0ae8c4a74b Clip to min and max range of input image, add missing clip parameter to other functions 2014-12-22 20:28:00 +01:00
François Boulogne f8fba67dbb DOC remplace iff by if and only if 2014-12-21 08:57:08 -05:00
Stefan van der Walt a2a8696ee9 Merge pull request #1051 from ahojnnes/bicubic-interp
Bicubic interpolation fix and reference
2014-12-15 23:15:13 +02:00
Johannes Schönberger 3a1079a180 Misc PEP8 fixes 2014-12-14 02:56:14 +01:00
Johannes Schönberger 00c3a978aa Remove broken test case 2014-12-13 14:51:19 +01:00
Johannes Schönberger dcc021c903 Use SciPy for second order interpolation, add warnings to buggy functions 2014-12-13 14:45:43 +01:00
Johannes Schönberger 84871a6d6f Fix bug in get_pixel3d 2014-12-13 13:32:16 +01:00
Johannes Schönberger 5e3d805cf0 Fix broken test case, which used black image 2014-12-13 13:32:16 +01:00
Johannes Schönberger c63c5e3239 Fix bug in bicubic interpolation and extend test cases to higher orders 2014-12-13 13:31:06 +01:00
emmanuelle 873a2bab4f Modified a few docstrings that made doctesting fail 2014-12-07 16:58:36 +01:00
Rebecca 1b217f971e replacing lena in examples and most tests 2014-11-07 16:01:23 +02:00
Stefan van der Walt 97e4599e1c Merge pull request #1168 from ahojnnes/rot-center
Add option to rotate around specific center. Closes gh-1166.
2014-09-22 16:03:37 +02:00
Johannes Schönberger 8432b90eb8 Add option to rotate around specific center 2014-09-22 08:56:14 -04:00
Johannes Schönberger f846320d78 Add option to combine tform with inverse tform 2014-09-22 08:45:51 -04:00
Johannes Schönberger d367ff479b Use for mgrid for Py26 compatibility 2014-09-19 13:34:00 -04:00
Johannes Schönberger 877a7ba109 Add test for N-D warping 2014-09-18 21:03:56 -04:00
Johannes Schönberger f5c627493e Extend description of clipping behavior 2014-09-18 20:52:55 -04:00
Johannes Schönberger fdf0908ab7 Add option to skip clipping of output, and detect if input float image has negative values 2014-09-18 20:49:25 -04:00
Johannes Schönberger 46305eeeec Remove legacy parameter 2014-09-18 20:36:34 -04:00
Johannes Schönberger 6e26f3a7c7 Fix indendation of parameter description 2014-09-18 20:27:38 -04:00
Johannes Schönberger 6ff1bf26ee Move comments into if scope 2014-09-18 20:22:35 -04:00
Johannes Schönberger da36750d55 Make row, col ordering clearer in doc string 2014-09-16 08:19:48 -04:00