import os import numpy as np try: import skimage as si except Exception: si = None from numpy.testing import ( assert_array_equal, assert_array_almost_equal, run_module_suite) from numpy.testing.decorators import skipif from tempfile import NamedTemporaryFile from .tifffile import imread, imsave np.random.seed(0) @skipif(si is None) def test_imread_uint16(): expected = np.load(os.path.join(si.data_dir, 'chessboard_GRAY_U8.npy')) img = imread(os.path.join(si.data_dir, 'chessboard_GRAY_U16.tif')) assert img.dtype == np.uint16 assert_array_almost_equal(img, expected) @skipif(si is None) def test_imread_uint16_big_endian(): expected = np.load(os.path.join(si.data_dir, 'chessboard_GRAY_U8.npy')) img = imread(os.path.join(si.data_dir, 'chessboard_GRAY_U16B.tif')) assert img.dtype == np.uint16 assert_array_almost_equal(img, expected) def test_extension(): from .tifffile.tifffile import decodelzw import types assert isinstance(decodelzw, types.BuiltinFunctionType), type(decodelzw) class TestSave: def roundtrip(self, dtype, x): f = NamedTemporaryFile(suffix='.tif') fname = f.name f.close() imsave(fname, x) y = imread(fname) assert_array_equal(x, y) def test_imsave_roundtrip(self): for shape in [(10, 10), (10, 10, 3), (10, 10, 4)]: for dtype in (np.uint8, np.uint16, np.float32, np.int16, np.float64): x = np.random.rand(*shape) if not np.issubdtype(dtype, float): x = (x * np.iinfo(dtype).max).astype(dtype) else: x = x.astype(dtype) yield self.roundtrip, dtype, x if __name__ == "__main__": run_module_suite()