import os.path import numpy as np from numpy.testing import assert_raises, assert_equal, assert_allclose from skimage import data_dir from skimage.io.collection import ImageCollection, alphanumeric_key def test_string_split(): test_string = 'z23a' test_str_result = ['z', 23, 'a'] assert_equal(alphanumeric_key(test_string), test_str_result) def test_string_sort(): filenames = ['f9.10.png', 'f9.9.png', 'f10.10.png', 'f10.9.png', 'e9.png', 'e10.png', 'em.png'] sorted_filenames = ['e9.png', 'e10.png', 'em.png', 'f9.9.png', 'f9.10.png', 'f10.9.png', 'f10.10.png'] sorted_filenames = sorted(filenames, key=alphanumeric_key) assert_equal(sorted_filenames, sorted_filenames) class TestImageCollection(): pattern = [os.path.join(data_dir, pic) for pic in ['camera.png', 'color.png']] pattern_matched = [os.path.join(data_dir, pic) for pic in ['camera.png', 'moon.png']] def setUp(self): # Generic image collection with images of different shapes. self.images = ImageCollection(self.pattern) # Image collection with images having shapes that match. self.images_matched = ImageCollection(self.pattern_matched) def test_len(self): assert len(self.images) == 2 def test_getitem(self): num = len(self.images) for i in range(-num, num): assert type(self.images[i]) is np.ndarray assert_allclose(self.images[0], self.images[-num]) # assert_raises expects a callable, hence this thin wrapper function. def return_img(n): return self.images[n] assert_raises(IndexError, return_img, num) assert_raises(IndexError, return_img, -num - 1) def test_slicing(self): assert type(self.images[:]) is ImageCollection assert len(self.images[:]) == 2 assert len(self.images[:1]) == 1 assert len(self.images[1:]) == 1 assert_allclose(self.images[0], self.images[:1][0]) assert_allclose(self.images[1], self.images[1:][0]) assert_allclose(self.images[1], self.images[::-1][0]) assert_allclose(self.images[0], self.images[::-1][1]) def test_files_property(self): assert isinstance(self.images.files, list) def set_files(f): self.images.files = f assert_raises(AttributeError, set_files, 'newfiles') def test_custom_load(self): load_pattern = [(1, 'one'), (2, 'two')] def load_fn(x): return x ic = ImageCollection(load_pattern, load_func=load_fn) assert_equal(ic[1], (2, 'two')) def test_concatenate(self): array = self.images_matched.concatenate() expected_shape = (len(self.images_matched),) + self.images[0].shape assert_equal(array.shape, expected_shape) def test_concatentate_mismatched_image_shapes(self): assert_raises(ValueError, self.images.concatenate) if __name__ == "__main__": from numpy.testing import run_module_suite run_module_suite()