import os import skimage as si import skimage.io as sio import numpy as np from numpy.testing import * from numpy.testing.decorators import skipif from tempfile import NamedTemporaryFile try: import skimage.io._plugins.tifffile_plugin as tf _plugins = sio.plugin_order() TF_available = True sio.use_plugin('tifffile') except ImportError: TF_available = False np.random.seed(0) def teardown(): sio.reset_plugins() @skipif(not TF_available) def test_imread_uint16(): expected = np.load(os.path.join(si.data_dir, 'chessboard_GRAY_U8.npy')) img = sio.imread(os.path.join(si.data_dir, 'chessboard_GRAY_U16.tif')) assert img.dtype == np.uint16 assert_array_almost_equal(img, expected) @skipif(not TF_available) def test_imread_uint16_big_endian(): expected = np.load(os.path.join(si.data_dir, 'chessboard_GRAY_U8.npy')) img = sio.imread(os.path.join(si.data_dir, 'chessboard_GRAY_U16B.tif')) assert img.dtype == np.uint16 assert_array_almost_equal(img, expected) class TestSave: def roundtrip(self, dtype, x): f = NamedTemporaryFile(suffix='.tif') fname = f.name f.close() sio.imsave(fname, x) y = sio.imread(fname) assert_array_equal(x, y) @skipif(not TF_available) def test_imsave_roundtrip(self): for shape in [(10, 10), (10, 10, 3), (10, 10, 4)]: for dtype in (np.uint8, np.uint16, np.float32, np.float64): x = np.ones(shape, dtype=dtype) * np.random.rand(*shape) if not np.issubdtype(dtype, float): x = (x * 255).astype(dtype) yield self.roundtrip, dtype, x if __name__ == "__main__": run_module_suite()