from numpy.testing import assert_equal, assert_almost_equal import numpy as np from skimage.measure import profile_line image = np.arange(100).reshape((10, 10)).astype(np.float) def test_horizontal_rightward(): prof = profile_line(image, (0, 2), (0, 8), order=0) expected_prof = np.arange(2, 9) assert_equal(prof, expected_prof) def test_horizontal_leftward(): prof = profile_line(image, (0, 8), (0, 2), order=0) expected_prof = np.arange(8, 1, -1) assert_equal(prof, expected_prof) def test_vertical_downward(): prof = profile_line(image, (2, 5), (8, 5), order=0) expected_prof = np.arange(25, 95, 10) assert_equal(prof, expected_prof) def test_vertical_upward(): prof = profile_line(image, (8, 5), (2, 5), order=0) expected_prof = np.arange(85, 15, -10) assert_equal(prof, expected_prof) def test_45deg_right_downward(): prof = profile_line(image, (2, 2), (8, 8), order=0) expected_prof = np.array([22, 33, 33, 44, 55, 55, 66, 77, 77, 88]) # repeats are due to aliasing using nearest neighbor interpolation. # to see this, imagine a diagonal line with markers every unit of # length traversing a checkerboard pattern of squares also of unit # length. Because the line is diagonal, sometimes more than one # marker will fall on the same checkerboard box. assert_almost_equal(prof, expected_prof) def test_45deg_right_downward_interpolated(): prof = profile_line(image, (2, 2), (8, 8), order=1) expected_prof = np.linspace(22, 88, 10) assert_almost_equal(prof, expected_prof) def test_45deg_right_upward(): prof = profile_line(image, (8, 2), (2, 8), order=1) expected_prof = np.arange(82, 27, -6) assert_almost_equal(prof, expected_prof) def test_45deg_left_upward(): prof = profile_line(image, (8, 8), (2, 2), order=1) expected_prof = np.arange(88, 21, -22. / 3) assert_almost_equal(prof, expected_prof) def test_45deg_left_downward(): prof = profile_line(image, (2, 8), (8, 2), order=1) expected_prof = np.arange(28, 83, 6) assert_almost_equal(prof, expected_prof) def test_pythagorean_triangle_right_downward(): prof = profile_line(image, (1, 1), (7, 9), order=0) expected_prof = np.array([11, 22, 23, 33, 34, 45, 56, 57, 67, 68, 79]) assert_equal(prof, expected_prof) def test_pythagorean_triangle_right_downward_interpolated(): prof = profile_line(image, (1, 1), (7, 9), order=1) expected_prof = np.linspace(11, 79, 11) assert_almost_equal(prof, expected_prof) pyth_image = np.zeros((6, 7), np.float) line = ((1, 2, 2, 3, 3, 4), (1, 2, 3, 3, 4, 5)) below = ((2, 2, 3, 4, 4, 5), (0, 1, 2, 3, 4, 4)) above = ((0, 1, 1, 2, 3, 3), (2, 2, 3, 4, 5, 6)) pyth_image[line] = 1.8 pyth_image[below] = 0.6 pyth_image[above] = 0.6 def test_pythagorean_triangle_right_downward_linewidth(): prof = profile_line(pyth_image, (1, 1), (4, 5), linewidth=3, order=0) expected_prof = np.ones(6) assert_almost_equal(prof, expected_prof) def test_pythagorean_triangle_right_upward_linewidth(): prof = profile_line(pyth_image[::-1, :], (4, 1), (1, 5), linewidth=3, order=0) expected_prof = np.ones(6) assert_almost_equal(prof, expected_prof) def test_pythagorean_triangle_transpose_left_down_linewidth(): prof = profile_line(pyth_image.T[:, ::-1], (1, 4), (5, 1), linewidth=3, order=0) expected_prof = np.ones(6) assert_almost_equal(prof, expected_prof) if __name__ == "__main__": from numpy.testing import run_module_suite run_module_suite()