import itertools as it import warnings import numpy as np from numpy.testing import assert_equal, assert_raises from skimage.segmentation import slic def test_color_2d(): rnd = np.random.RandomState(0) img = np.zeros((20, 21, 3)) img[:10, :10, 0] = 1 img[10:, :10, 1] = 1 img[10:, 10:, 2] = 1 img += 0.01 * rnd.normal(size=img.shape) img[img > 1] = 1 img[img < 0] = 0 with warnings.catch_warnings(): warnings.simplefilter("ignore") seg = slic(img, n_segments=4, sigma=0) # we expect 4 segments assert_equal(len(np.unique(seg)), 4) assert_equal(seg.shape, img.shape[:-1]) assert_equal(seg[:10, :10], 0) assert_equal(seg[10:, :10], 2) assert_equal(seg[:10, 10:], 1) assert_equal(seg[10:, 10:], 3) def test_gray_2d(): rnd = np.random.RandomState(0) img = np.zeros((20, 21)) img[:10, :10] = 0.33 img[10:, :10] = 0.67 img[10:, 10:] = 1.00 img += 0.0033 * rnd.normal(size=img.shape) img[img > 1] = 1 img[img < 0] = 0 seg = slic(img, sigma=0, n_segments=4, compactness=1, multichannel=False, convert2lab=False) assert_equal(len(np.unique(seg)), 4) assert_equal(seg.shape, img.shape) assert_equal(seg[:10, :10], 0) assert_equal(seg[10:, :10], 2) assert_equal(seg[:10, 10:], 1) assert_equal(seg[10:, 10:], 3) def test_color_3d(): rnd = np.random.RandomState(0) img = np.zeros((20, 21, 22, 3)) slices = [] for dim_size in img.shape[:-1]: midpoint = dim_size // 2 slices.append((slice(None, midpoint), slice(midpoint, None))) slices = list(it.product(*slices)) colors = list(it.product(*(([0, 1],) * 3))) for s, c in zip(slices, colors): img[s] = c img += 0.01 * rnd.normal(size=img.shape) img[img > 1] = 1 img[img < 0] = 0 seg = slic(img, sigma=0, n_segments=8) assert_equal(len(np.unique(seg)), 8) for s, c in zip(slices, range(8)): assert_equal(seg[s], c) def test_gray_3d(): rnd = np.random.RandomState(0) img = np.zeros((20, 21, 22)) slices = [] for dim_size in img.shape: midpoint = dim_size // 2 slices.append((slice(None, midpoint), slice(midpoint, None))) slices = list(it.product(*slices)) shades = np.arange(0, 1.000001, 1.0 / 7) for s, sh in zip(slices, shades): img[s] = sh img += 0.001 * rnd.normal(size=img.shape) img[img > 1] = 1 img[img < 0] = 0 seg = slic(img, sigma=0, n_segments=8, compactness=1, multichannel=False, convert2lab=False) assert_equal(len(np.unique(seg)), 8) for s, c in zip(slices, range(8)): assert_equal(seg[s], c) def test_list_sigma(): rnd = np.random.RandomState(0) img = np.array([[1, 1, 1, 0, 0, 0], [0, 0, 0, 1, 1, 1]], np.float) img += 0.1 * rnd.normal(size=img.shape) result_sigma = np.array([[0, 0, 0, 1, 1, 1], [0, 0, 0, 1, 1, 1]], np.int) seg_sigma = slic(img, n_segments=2, sigma=[1, 50, 1], multichannel=False) assert_equal(seg_sigma, result_sigma) def test_spacing(): rnd = np.random.RandomState(0) img = np.array([[1, 1, 1, 0, 0], [1, 1, 0, 0, 0]], np.float) result_non_spaced = np.array([[0, 0, 0, 1, 1], [0, 0, 1, 1, 1]], np.int) result_spaced = np.array([[0, 0, 0, 0, 0], [1, 1, 1, 1, 1]], np.int) img += 0.1 * rnd.normal(size=img.shape) seg_non_spaced = slic(img, n_segments=2, sigma=0, multichannel=False, compactness=1.0) seg_spaced = slic(img, n_segments=2, sigma=0, spacing=[1, 500, 1], compactness=1.0, multichannel=False) assert_equal(seg_non_spaced, result_non_spaced) assert_equal(seg_spaced, result_spaced) def test_invalid_lab_conversion(): img = np.array([[1, 1, 1, 0, 0], [1, 1, 0, 0, 0]], np.float) + 1 assert_raises(ValueError, slic, img, multichannel=True, convert2lab=True) def test_enforce_connectivity(): img = np.array([[0, 0, 0, 1, 1, 1], [1, 0, 0, 1, 1, 0], [0, 0, 0, 1, 1, 0]], np.float) segments_connected = slic(img, 2, compactness=0.0001, enforce_connectivity=True, convert2lab=False) segments_disconnected = slic(img, 2, compactness=0.0001, enforce_connectivity=False, convert2lab=False) result_connected = np.array([[0, 0, 0, 1, 1, 1], [0, 0, 0, 1, 1, 1], [0, 0, 0, 1, 1, 1]], np.float) result_disconnected = np.array([[0, 0, 0, 1, 1, 1], [1, 0, 0, 1, 1, 0], [0, 0, 0, 1, 1, 0]], np.float) assert_equal(segments_connected, result_connected) assert_equal(segments_disconnected, result_disconnected) def test_slic_zero(): # Same as test_color_2d but with slic_zero=True rnd = np.random.RandomState(0) img = np.zeros((20, 21, 3)) img[:10, :10, 0] = 1 img[10:, :10, 1] = 1 img[10:, 10:, 2] = 1 img += 0.01 * rnd.normal(size=img.shape) img[img > 1] = 1 img[img < 0] = 0 with warnings.catch_warnings(): warnings.simplefilter("ignore") seg = slic(img, n_segments=4, sigma=0, slic_zero=True) # we expect 4 segments assert_equal(len(np.unique(seg)), 4) assert_equal(seg.shape, img.shape[:-1]) assert_equal(seg[:10, :10], 0) assert_equal(seg[10:, :10], 2) assert_equal(seg[:10, 10:], 1) assert_equal(seg[10:, 10:], 3) if __name__ == '__main__': from numpy import testing testing.run_module_suite()