""" Example generation for the scikit image. Generate the rst files for the examples by iterating over the python example files. Files that generate images should start with 'plot'. This code was taken from the scikit-learn. """ import os import shutil import traceback import glob import matplotlib matplotlib.use('Agg') import token, tokenize rst_template = """ .. _example_%(short_fname)s: %(docstring)s **Python source code:** :download:`%(fname)s <%(fname)s>` (generated using ``skimage`` |version|) .. literalinclude:: %(fname)s :lines: %(end_row)s- """ plot_rst_template = """ .. _example_%(short_fname)s: %(docstring)s %(image_list)s **Python source code:** :download:`%(fname)s <%(fname)s>` (generated using ``skimage`` |version|) .. literalinclude:: %(fname)s :lines: %(end_row)s- """ toctree_template = """ .. toctree:: :hidden: %s """ # The following strings are used when we have several pictures: we use # an html div tag that our CSS uses to turn the lists into horizontal # lists. HLIST_HEADER = """ .. rst-class:: horizontal """ HLIST_IMAGE_TEMPLATE = """ * .. image:: images/%s :scale: 50 """ SINGLE_IMAGE = """ .. image:: images/%s :align: center """ def extract_docstring(filename): """ Extract a module-level docstring, if any """ lines = file(filename).readlines() start_row = 0 if lines[0].startswith('#!'): lines.pop(0) start_row = 1 docstring = '' first_par = '' tokens = tokenize.generate_tokens(lines.__iter__().next) for tok_type, tok_content, _, (erow, _), _ in tokens: tok_type = token.tok_name[tok_type] if tok_type in ('NEWLINE', 'COMMENT', 'NL', 'INDENT', 'DEDENT'): continue elif tok_type == 'STRING': docstring = eval(tok_content) # If the docstring is formatted with several paragraphs, extract # the first one: paragraphs = '\n'.join(line.rstrip() for line in docstring.split('\n')).split('\n\n') if len(paragraphs) > 0: first_par = paragraphs[0] break return docstring, first_par, erow+1+start_row def generate_example_rst(app): """ Generate the list of examples, as well as the contents of examples. """ root_dir = os.path.join(app.builder.srcdir, 'auto_examples') example_dir = os.path.abspath(app.builder.srcdir + '/../' + 'examples') try: plot_gallery = eval(app.builder.config.plot_gallery) except TypeError: plot_gallery = bool(app.builder.config.plot_gallery) if not os.path.exists(example_dir): os.makedirs(example_dir) if not os.path.exists(root_dir): os.makedirs(root_dir) # we create an index.rst with all examples fhindex = file(os.path.join(root_dir, 'index.txt'), 'w') fhindex.write("""\ Examples ======== .. _examples-index: """) # Here we don't use an os.walk, but we recurse only twice: flat is # better than nested. generate_dir_rst('.', fhindex, example_dir, root_dir, plot_gallery) for dir in sorted(os.listdir(example_dir)): if os.path.isdir(os.path.join(example_dir, dir)): generate_dir_rst(dir, fhindex, example_dir, root_dir, plot_gallery) fhindex.flush() def generate_dir_rst(dir, fhindex, example_dir, root_dir, plot_gallery): """ Generate the rst file for an example directory. """ if not dir == '.': target_dir = os.path.join(root_dir, dir) src_dir = os.path.join(example_dir, dir) else: target_dir = root_dir src_dir = example_dir if not os.path.exists(os.path.join(src_dir, 'README.txt')): print 80*'_' print ('Example directory %s does not have a README.txt file' % src_dir) print 'Skipping this directory' print 80*'_' return example_description = file(os.path.join(src_dir, 'README.txt')).read() fhindex.write("""\n\n%s\n\n""" % example_description) if not os.path.exists(target_dir): os.makedirs(target_dir) def sort_key(a): # put last elements without a plot if not a.startswith('plot') and a.endswith('.py'): return 'zz' + a return a examples = [fname for fname in sorted(os.listdir(src_dir), key=sort_key) if fname.endswith('py')] ex_names = [ex[:-3] for ex in examples] # strip '.py' extension fhindex.write(toctree_template % '\n '.join(ex_names)) for fname in examples: generate_file_rst(fname, target_dir, src_dir, plot_gallery) thumb = os.path.join(dir, 'images', 'thumb', fname[:-3] + '.png') link_name = os.path.join(dir, fname).replace(os.path.sep, '_') fhindex.write('.. figure:: %s\n' % thumb) if link_name.startswith('._'): link_name = link_name[2:] fhindex.write(' :figclass: gallery\n') if dir != '.': fhindex.write(' :target: ./%s/%s.html\n\n' % (dir, fname[:-3])) else: fhindex.write(' :target: ./%s.html\n\n' % link_name[:-3]) fhindex.write(' :ref:`example_%s`\n\n' % link_name) fhindex.write(""" .. raw:: html
""") # clear at the end of the section def generate_file_rst(fname, target_dir, src_dir, plot_gallery): """ Generate the rst file for a given example. """ base_image_name = os.path.splitext(fname)[0] image_fname = '%s_%%s.png' % base_image_name this_template = rst_template last_dir = os.path.split(src_dir)[-1] # to avoid leading . in file names, and wrong names in links if last_dir == '.' or last_dir == 'examples': last_dir = '' else: last_dir += '_' short_fname = last_dir + fname src_file = os.path.join(src_dir, fname) example_file = os.path.join(target_dir, fname) shutil.copyfile(src_file, example_file) # The following is a list containing all the figure names figure_list = [] image_dir = os.path.join(target_dir, 'images') thumb_dir = os.path.join(image_dir, 'thumb') if not os.path.exists(image_dir): os.makedirs(image_dir) if not os.path.exists(thumb_dir): os.makedirs(thumb_dir) image_path = os.path.join(image_dir, image_fname) thumb_file = os.path.join(thumb_dir, fname[:-3] + '.png') if plot_gallery and fname.startswith('plot'): # generate the plot as png image if file name # starts with plot and if it is more recent than an # existing image. first_image_file = image_path % 1 if (not os.path.exists(first_image_file) or os.stat(first_image_file).st_mtime <= os.stat(src_file).st_mtime): # We need to execute the code print 'plotting %s' % fname import matplotlib.pyplot as plt plt.close('all') cwd = os.getcwd() try: # First CD in the original example dir, so that any file created # by the example get created in this directory os.chdir(os.path.dirname(src_file)) execfile(os.path.basename(src_file), {'pl' : plt}) os.chdir(cwd) # In order to save every figure we have two solutions : # * iterate from 1 to infinity and call plt.fignum_exists(n) # (this requires the figures to be numbered # incrementally: 1, 2, 3 and not 1, 2, 5) # * iterate over [fig_mngr.num for fig_mngr in # matplotlib._pylab_helpers.Gcf.get_all_fig_managers()] for fig_num in (fig_mngr.num for fig_mngr in matplotlib._pylab_helpers.Gcf.get_all_fig_managers()): # Set the fig_num figure as the current figure as we can't # save a figure that's not the current figure. plt.figure(fig_num) plt.savefig(image_path % fig_num) figure_list.append(image_fname % fig_num) except: print 80*'_' print '%s is not compiling:' % fname traceback.print_exc() print 80*'_' finally: os.chdir(cwd) else: figure_list = [f[len(image_dir):] for f in glob.glob(image_path % '[1-9]')] #for f in glob.glob(image_path % '*')] # generate thumb file this_template = plot_rst_template from matplotlib import image if os.path.exists(first_image_file): image.thumbnail(first_image_file, thumb_file, 0.25) if not os.path.exists(thumb_file): # create something not to replace the thumbnail shutil.copy('source/auto_examples/images/blank_image.png', thumb_file) docstring, short_desc, end_row = extract_docstring(example_file) # Depending on whether we have one or more figures, we're using a # horizontal list or a single rst call to 'image'. if len(figure_list) == 1: figure_name = figure_list[0] image_list = SINGLE_IMAGE % figure_name.lstrip('/') else: image_list = HLIST_HEADER for figure_name in figure_list: image_list += HLIST_IMAGE_TEMPLATE % figure_name.lstrip('/') f = open(os.path.join(target_dir, fname[:-2] + 'txt'),'w') f.write(this_template % locals()) f.flush() def setup(app): app.connect('builder-inited', generate_example_rst) app.add_config_value('plot_gallery', True, 'html')