__all__ = ['montage2d'] import numpy as np from .. import exposure EPSILON = 1e-6 def montage2d(arr_in, fill='mean', rescale_intensity=False, grid_shape=None): """Create a 2-dimensional 'montage' from a 3-dimensional input array representing an ensemble of equally shaped 2-dimensional images. For example, ``montage2d(arr_in, fill)`` with the following `arr_in` +---+---+---+ | 1 | 2 | 3 | +---+---+---+ will return: +---+---+ | 1 | 2 | +---+---+ | 3 | * | +---+---+ Where the '*' patch will be determined by the `fill` parameter. Parameters ---------- arr_in: ndarray, shape=[n_images, height, width] 3-dimensional input array representing an ensemble of n_images of equal shape (i.e. [height, width]). fill: float or 'mean', optional How to fill the 2-dimensional output array when sqrt(n_images) is not an integer. If 'mean' is chosen, then fill = arr_in.mean(). rescale_intensity: bool, optional Whether to rescale the intensity of each image to [0, 1]. grid_shape: tuple, optional The desired grid shape for the montage (tiles_y, tiles_x). The default aspect ratio is square. Returns ------- arr_out: ndarray, shape=[alpha * height, alpha * width] Output array where 'alpha' has been determined automatically to fit (at least) the `n_images` in `arr_in`. Examples -------- >>> import numpy as np >>> from skimage.util.montage import montage2d >>> arr_in = np.arange(3 * 2 * 2).reshape(3, 2, 2) >>> print(arr_in) # doctest: +NORMALIZE_WHITESPACE [[[ 0 1] [ 2 3]] [[ 4 5] [ 6 7]] [[ 8 9] [10 11]]] >>> arr_out = montage2d(arr_in) >>> print(arr_out.shape) (4, 4) >>> print(arr_out) [[ 0. 1. 4. 5. ] [ 2. 3. 6. 7. ] [ 8. 9. 5.5 5.5] [ 10. 11. 5.5 5.5]] >>> print(arr_in.mean()) 5.5 >>> arr_out_nonsquare = montage2d(arr_in, grid_shape=(3, 4)) >>> print(arr_out_nonsquare) [[ 0. 1. 4. 5. ] [ 2. 3. 6. 7. ] [ 8. 9. 10. 11. ]] >>> print(arr_out_nonsquare.shape) (3, 4) """ assert arr_in.ndim == 3 n_images, height, width = arr_in.shape arr_in = arr_in.copy() # -- rescale intensity if necessary if rescale_intensity: for i in range(n_images): arr_in[i] = exposure.rescale_intensity(arr_in[i]) # -- determine alpha if grid_shape: alpha_y, alpha_x = grid_shape else: alpha_y = alpha_x = int(np.ceil(np.sqrt(n_images))) # -- fill missing patches if fill == 'mean': fill = arr_in.mean() n_missing = int((alpha_y * alpha_x) - n_images) missing = np.ones((n_missing, height, width), dtype=arr_in.dtype) * fill arr_out = np.vstack((arr_in, missing)) # -- reshape to 2d montage, step by step arr_out = arr_out.reshape(alpha_y, alpha_x, height, width) arr_out = arr_out.swapaxes(1, 2) arr_out = arr_out.reshape(alpha_y * height, alpha_x * width) return arr_out