from skimage.util.dtype import dtype_range from .base import Plugin from ..utils import ClearColormap class OverlayPlugin(Plugin): """Plugin for ImageViewer that displays an overlay on top of main image. The base Plugin class displays the filtered image directly on the viewer. OverlayPlugin will instead overlay an image with a transparent colormap. See base Plugin class for additional details. Attributes ---------- overlay : array Overlay displayed on top of image. This overlay defaults to a color map with alpha values varying linearly from 0 to 1. color : int Color of overlay. """ colors = {'red': (1, 0, 0), 'yellow': (1, 1, 0), 'green': (0, 1, 0), 'cyan': (0, 1, 1)} def __init__(self, **kwargs): super(OverlayPlugin, self).__init__(**kwargs) self._overlay_plot = None self._overlay = None self.cmap = None self.color_names = self.colors.keys() def attach(self, image_viewer): super(OverlayPlugin, self).attach(image_viewer) #TODO: `color` doesn't update GUI widget when set manually. self.color = 0 @property def overlay(self): return self._overlay @overlay.setter def overlay(self, image): self._overlay = image ax = self.image_viewer.ax if image is None: ax.images.remove(self._overlay_plot) self._overlay_plot = None elif self._overlay_plot is None: vmin, vmax = dtype_range[image.dtype.type] self._overlay_plot = ax.imshow(image, cmap=self.cmap, vmin=vmin, vmax=vmax) else: self._overlay_plot.set_array(image) self.image_viewer.redraw() @property def color(self): return self._color @color.setter def color(self, index): # Update colormap whenever color is changed. if isinstance(index, basestring) and index not in self.color_names: raise ValueError("%s not defined in OverlayPlugin.colors" % index) else: name = self.color_names[index] self._color = name rgb = self.colors[name] self.cmap = ClearColormap(rgb) if self._overlay_plot is not None: self._overlay_plot.set_cmap(self.cmap) self.image_viewer.redraw() def display_filtered_image(self, image): """Display filtered image as an overlay on top of image in viewer.""" self.overlay = image def closeEvent(self, event): # clear overlay from ImageViewer on close self.overlay = None super(OverlayPlugin, self).closeEvent(event)