""" :author: Damian Eads, 2009 :license: modified BSD """ import numpy as np def square(width, dtype=np.uint8): """ Generates a flat, square-shaped structuring element. Every pixel along the perimeter has a chessboard distance no greater than radius (radius=floor(width/2)) pixels. Parameters ---------- width : int The width and height of the square Other Parameters ---------------- dtype : data-type The data type of the structuring element. Returns ------- selem : ndarray A structuring element consisting only of ones, i.e. every pixel belongs to the neighborhood. """ return np.ones((width, width), dtype=dtype) def rectangle(width, height, dtype=np.uint8): """ Generates a flat, rectangular-shaped structuring element of a given width and height. Every pixel in the rectangle belongs to the neighboorhood. Parameters ---------- width : int The width of the rectangle height : int The height of the rectangle Other Parameters ---------------- dtype : data-type The data type of the structuring element. Returns ------- selem : ndarray A structuring element consisting only of ones, i.e. every pixel belongs to the neighborhood. """ return np.ones((width, height), dtype=dtype) def diamond(radius, dtype=np.uint8): """ Generates a flat, diamond-shaped structuring element of a given radius. A pixel is part of the neighborhood (i.e. labeled 1) if the city block/manhattan distance between it and the center of the neighborhood is no greater than radius. Parameters ---------- radius : int The radius of the diamond-shaped structuring element. dtype : data-type The data type of the structuring element. Returns ------- selem : ndarray The structuring element where elements of the neighborhood are 1 and 0 otherwise. """ half = radius (I, J) = np.meshgrid(range(0, radius * 2 + 1), range(0, radius * 2 + 1)) s = np.abs(I - half) + np.abs(J - half) return np.array(s <= radius, dtype=dtype) def disk(radius, dtype=np.uint8): """ Generates a flat, disk-shaped structuring element of a given radius. A pixel is within the neighborhood if the euclidean distance between it and the origin is no greater than radius. Parameters ---------- radius : int The radius of the disk-shaped structuring element. dtype : data-type The data type of the structuring element. Returns ------- selem : ndarray The structuring element where elements of the neighborhood are 1 and 0 otherwise. """ L = np.linspace(-radius, radius, 2 * radius + 1) (X, Y) = np.meshgrid(L, L) s = X**2 s += Y**2 return np.array(s <= radius * radius, dtype=dtype) def cube(width, dtype=np.uint8): """ Generates a cube-shaped structuring element (the 3D equivalent of a square). Every pixel along the perimeter has a chessboard distance no greater than radius (radius=floor(width/2)) pixels. Parameters ---------- width : int The width, height and depth of the cube Other Parameters ---------------- dtype : data-type The data type of the structuring element. Returns ------- selem : ndarray A structuring element consisting only of ones, i.e. every pixel belongs to the neighborhood. """ return np.ones((width, width, width), dtype=dtype) def octahedron(radius, dtype=np.uint8): """ Generates a octahedron-shaped structuring element of a given radius (the 3D equivalent of a diamond). A pixel is part of the neighborhood (i.e. labeled 1) if the city block/manhattan distance between it and the center of the neighborhood is no greater than radius. Parameters ---------- radius : int The radius of the octahedron-shaped structuring element. dtype : data-type The data type of the structuring element. Returns ------- selem : ndarray The structuring element where elements of the neighborhood are 1 and 0 otherwise. """ # note that in contrast to diamond(), this method allows non-integer radii n = 2 * radius + 1 Z, Y, X = np.mgrid[ -radius:radius:n*1j, -radius:radius:n*1j, -radius:radius:n*1j] s = np.abs(X) + np.abs(Y) + np.abs(Z) return np.array(s <= radius, dtype=dtype) def ball(radius, dtype=np.uint8): """ Generates a ball-shaped structuring element of a given radius (the 3D equivalent of a disk). A pixel is within the neighborhood if the euclidean distance between it and the origin is no greater than radius. Parameters ---------- radius : int The radius of the ball-shaped structuring element. dtype : data-type The data type of the structuring element. Returns ------- selem : ndarray The structuring element where elements of the neighborhood are 1 and 0 otherwise. """ n = 2 * radius + 1 Z, Y, X = np.mgrid[ -radius:radius:n*1j, -radius:radius:n*1j, -radius:radius:n*1j] s = X**2 + Y**2 + Z**2 return np.array(s <= radius * radius, dtype=dtype)