Files
blink1073 b6dcf3c336 Update Travis build to use Anaconda.
Update Travis build to use Anaconda

Travis updates and fixes

More travis fixes

Another travis attempt

Revert changes

Use PIL and Pillow

Refactor travis into 4 different builds

Fix activation error

Remove explicit mpl in build_versions.py

Make matplotlib an explicit requirement

Rearrange travis

Make pillow a hard requirement

Try again to make Pillow optional

Fix bash syntax error

Fix bash syntax error

Bump required cython version

More rearrangments

Remove mpl from build_versions, rearrange travis

Fix version check

Make matplotlib explicit again

Conda install into test env

Check for proper install

Allow tests to skip if networkx is not available

Allow tests to skip if networkx is not available

Try swapping pillow for matplotlib

Allow tests to pass when matplotlib is not present

Remove matplotlib from build_versions

Print PIL version

Get pillow from PIP

Allow tests to skip if matplotlib is not present.

Allow tests to skip if networkx is not present.

travis fix

Remove unused mpl import that caused test error

Use nose-cov and do not run doctests without optional libs

Bump required numpy version and fix nose calls

Make overlay test repeatable

bump numpy version again

Move low-end numpy to python 2.7

Play with minimum versions

Add version requirements and use functions

Add version requirements and use functions

Allow require to skip a test

More implementation of require decorator

Update require decorator and clean up tests

Only use requires decorator when needed

Fix python3 error in version_requirements

Fix build errors

Fix handling of require with tests

More fixes for require handler

Use latest miniconda

Fix more build errors

Fix another dict comprehension and travis file.

Fix missing imports

Fix dictionary again

Fix import warning

Fix last failing test on 2.6

Skip doc examples on python2.6

Do not run doctests on python2.6

Fix typo in travis.yml

Make numpy-1.6 compatibility changes

Use numpy-1.6 in travis python2.6

Add tests for version requirements

Fix line noise in PR

Add additional io plugins

Fix simpleitk test.

Fix python 3 error in freeimage_plugin.

Install imread in Travis.

Put matplotlib settings in XDG recommended directory

Fix formatting in travis yml

Fix formatting in travis yml

Make sure to close PIL file atexit

Fix name of apt package xcftools

Fix pil fp closing

Fix matplotlibrc creation

Only download SimpleITK on py2x, run coverage on py27

Fix travis yml syntax error

Run coveralls on py2.7

Install SimpleITK on py3.3 and run coverage on py3.3

Make simpleitk install quiet

Use standard nose and clean up incantation

Fix travis yml syntax error

Put in miniconda workout for libc error.

Fix imread plugin.

Fix travis syntax

Remove unused import

Remove miniconda libpng in favor of system png

Fix imread install and move libm removal to after optional pkg install.

Fix png header copy in travis yml

Another attempt to use png headers

Debug freeimage

Add jpeg library for freeimage and debug imread.

More debug for imread and freeimage

More freeimage and imread debugging

More debugging

Use correct paths for test env

Make sure imread is tied to libpng15

Add a TODO note for simpleitk test causing error.

Fix typo in yml

Cleanup and add more comments to travis yml

Update comment

Try and add 3.2 support.

Docstring formatting

Add more travis comments.

Try numpy 1.6 on python 2.7

Fix travis syntax error

Rename CONDA to ENV for clarity

Alias python on python 3.2

Use python 3.2 as the system python

Clean up libfreeimage install

Fix order on py3.2 pre_install

Move old numpy back to py26

Use the appropriate python calls.

Debug 3.2 build.

Update comment

Fix syntax error

Another fix for syntax error.

Install scipy after downloading import tools

More debugging for py32

Do not install conda on py3.2 (duh)

Fix typo in travis yml

Fix py32 qt install, separate pyfits and imread to find error

Fix syntax error and front-load option lib check for debug

pyfits is not supported in py3.2, try imread now

imread is also not supported on py3.2

install imread before pyfits to show relationship with libs

Make pip builds quiet

Minor formatting to retrigger build

Allow simpleitk to fail to download without breaking the build

Use travis_retry for SimpleITK

See what breaks when we keep libm in

Now remove libm again
2014-08-02 06:47:09 -05:00

176 lines
5.4 KiB
Python

from .util import prepare_for_display, window_manager
import numpy as np
# We try to aquire the gui lock first or else the gui import might
# trample another GUI's PyOS_InputHook.
window_manager.acquire('qt')
try:
from PyQt4.QtGui import (QApplication, QImage,
QLabel, QMainWindow, QPixmap, QWidget)
from PyQt4 import QtCore, QtGui
import sip
import warnings
except ImportError:
window_manager._release('qt')
raise ImportError("""\
PyQt4 libraries not installed. Please refer to
http://www.riverbankcomputing.co.uk/software/pyqt/intro
for more information. PyQt4 is GPL licensed. For an
LGPL equivalent, see
http://www.pyside.org
""")
app = None
class ImageLabel(QLabel):
def __init__(self, parent, arr):
QLabel.__init__(self)
# we need to hold a reference to
# arr because QImage doesn't copy the data
# and the buffer must be alive as long
# as the image is alive.
self.arr = arr
# we also need to pass in the row-stride to
# the constructor, because we can't guarantee
# that every row of the numpy data is
# 4-byte aligned. Which Qt would require
# if we didnt pass the stride.
self.img = QImage(arr.data, arr.shape[1], arr.shape[0],
arr.strides[0], QImage.Format_RGB888)
self.pm = QPixmap.fromImage(self.img)
self.setPixmap(self.pm)
self.setAlignment(QtCore.Qt.AlignTop)
self.setMinimumSize(100, 100)
def resizeEvent(self, evt):
width = self.width()
pm = QPixmap.fromImage(self.img)
self.pm = pm.scaledToWidth(width)
self.setPixmap(self.pm)
class ImageWindow(QMainWindow):
def __init__(self, arr, mgr):
QMainWindow.__init__(self)
self.setWindowTitle('skimage')
self.mgr = mgr
self.main_widget = QWidget()
self.layout = QtGui.QGridLayout(self.main_widget)
self.setCentralWidget(self.main_widget)
self.label = ImageLabel(self, arr)
self.layout.addWidget(self.label, 0, 0)
self.layout.addLayout
self.mgr.add_window(self)
self.main_widget.show()
def closeEvent(self, event):
# Allow window to be destroyed by removing any
# references to it
self.mgr.remove_window(self)
def imread_qt(filename):
"""
Read an image using QT's QImage.load
"""
qtimg = QImage()
if not qtimg.load(filename):
# QImage.load() returns false on failure, so raise an exception
raise IOError('Unable to load file %s' % filename)
if qtimg.depth() == 1:
raise IOError('1-bit images currently not supported')
# TODO: Warn about other odd formats we don't currently handle properly,
# such as the odd 16-bit packed formats QT supports
arrayptr = qtimg.bits()
# QT may pad the image, so we need to use bytesPerLine, not width for
# the conversion to a numpy array
bytesPerPixel = qtimg.depth() // 8
pixelsPerLine = qtimg.bytesPerLine() // bytesPerPixel
img_size = pixelsPerLine * qtimg.height() * bytesPerPixel
arrayptr.setsize(img_size)
img = np.array(arrayptr)
# Reshape and trim down to correct dimensions
if bytesPerPixel > 1:
img = img.reshape((qtimg.height(), pixelsPerLine, bytesPerPixel))
img = img[:, :qtimg.width(), :]
else:
img = img.reshape((qtimg.height(), pixelsPerLine))
img = img[:, :qtimg.width()]
# Strip qt's false alpha channel if needed
# and reorder color axes as required
if bytesPerPixel == 4 and not qtimg.hasAlphaChannel():
img = img[:, :, 2::-1]
elif bytesPerPixel == 4:
img[:, :, 0:3] = img[:, :, 2::-1]
return img
if sip.SIP_VERSION >= 0x040c00:
# sip.voidptr only acquired a buffer view in 4.12.0, so our imread
# doesn't work with earlier versions
imread = imread_qt
else:
warnings.warn(RuntimeWarning(
"sip version too old. QT imread disabled"))
def imshow(arr, fancy=False):
global app
if not app:
app = QApplication([])
arr = prepare_for_display(arr)
if not fancy:
iw = ImageWindow(arr, window_manager)
else:
from .skivi import SkiviImageWindow
iw = SkiviImageWindow(arr, window_manager)
iw.show()
def _app_show():
global app
if app and window_manager.has_windows():
app.exec_()
else:
print('No images to show. See `imshow`.')
def imsave(filename, img, format_str=None):
# we can add support for other than 3D uint8 here...
img = prepare_for_display(img)
qimg = QImage(img.data, img.shape[1], img.shape[0],
img.strides[0], QImage.Format_RGB888)
if _is_filelike(filename):
byte_array = QtCore.QByteArray()
qbuffer = QtCore.QBuffer(byte_array)
qbuffer.open(QtCore.QIODevice.ReadWrite)
saved = qimg.save(qbuffer, format_str.upper())
qbuffer.seek(0)
filename.write(qbuffer.readAll().data())
qbuffer.close()
else:
saved = qimg.save(filename)
if not saved:
from textwrap import dedent
msg = dedent(
'''The image was not saved. Allowable file formats
for the QT imsave plugin are:
BMP, JPG, JPEG, PNG, PPM, TIFF, XBM, XPM''')
raise RuntimeError(msg)
def _is_filelike(possible_filelike):
return callable(getattr(possible_filelike, 'write', None))