Files
scikit-image/skimage/io/_plugins/pil_plugin.py
T
Steven Silvester 5f769cb4bf Fix handling of non-uint8 images for PIL imsave.
Fix handling of non-uint8 imags for PIL imsave.

Update build requirements and documentation

Reorganized dependencies in DEPENDS.txt.

Fix install_requires string formatting

Use img_as_ubyte instead of the previous hack

Add to the docstring notes.

Add to docstring notes

Fix errant changes

Add support for tif floating point and 16bit files

Handle case where format_str is None

Add note about 2D TIFF file support

Add handling for uint16 and integer types.
2014-10-09 20:18:20 -05:00

191 lines
5.0 KiB
Python

__all__ = ['imread']
import numpy as np
try:
from PIL import Image
except ImportError:
raise ImportError("The Python Image Library could not be found. "
"Please refer to "
"https://pypi.python.org/pypi/Pillow/ (or "
"http://pypi.python.org/pypi/PIL/) "
"for further instructions.")
from skimage.util import img_as_ubyte, img_as_uint, img_as_int, img_as_float
from six import string_types
def imread(fname, dtype=None):
"""Load an image from file.
Parameters
----------
fname : str
File name.
dtype : numpy dtype object or string specifier
Specifies data type of array elements.
"""
im = Image.open(fname)
try:
# this will raise an IOError if the file is not readable
im.getdata()[0]
except IOError:
site = "http://pillow.readthedocs.org/en/latest/installation.html#external-libraries"
raise ValueError('Could not load "%s"\nPlease see documentation at: %s' % (fname, site))
else:
return pil_to_ndarray(im, dtype)
def pil_to_ndarray(im, dtype=None):
"""Import a PIL Image object to an ndarray, in memory.
Parameters
----------
Refer to ``imread``.
"""
fp = im.fp if hasattr(im, 'fp') else None
if im.mode == 'P':
if _palette_is_grayscale(im):
im = im.convert('L')
else:
im = im.convert('RGB')
elif im.mode == '1':
im = im.convert('L')
elif im.mode.startswith('I;16'):
shape = im.size
dtype = '>u2' if im.mode.endswith('B') else '<u2'
im = np.fromstring(im.tostring(), dtype)
im.shape = shape[::-1]
elif 'A' in im.mode:
im = im.convert('RGBA')
im = np.array(im, dtype=dtype)
if fp is not None:
fp.close()
return im
def _palette_is_grayscale(pil_image):
"""Return True if PIL image in palette mode is grayscale.
Parameters
----------
pil_image : PIL image
PIL Image that is in Palette mode.
Returns
-------
is_grayscale : bool
True if all colors in image palette are gray.
"""
assert pil_image.mode == 'P'
# get palette as an array with R, G, B columns
palette = np.asarray(pil_image.getpalette()).reshape((256, 3))
# Not all palette colors are used; unused colors have junk values.
start, stop = pil_image.getextrema()
valid_palette = palette[start:stop]
# Image is grayscale if channel differences (R - G and G - B)
# are all zero.
return np.allclose(np.diff(valid_palette), 0)
def ndarray_to_pil(arr, format_str=None):
"""Export an ndarray to a PIL object.
Parameters
----------
Refer to ``imsave``.
"""
arr = np.asarray(arr).squeeze()
if arr.ndim not in (2, 3):
raise ValueError("Invalid shape for image array: %s" % arr.shape)
if arr.ndim == 3:
if arr.shape[2] not in (3, 4):
raise ValueError("Invalid number of channels in image array.")
if not format_str is None and format_str in ('tiff', 'tif'):
# open with pylibtiff
pass
if arr.ndim == 3:
arr = img_as_ubyte(arr)
mode_base = mode = {3: 'RGB', 4: 'RGBA'}[arr.shape[2]]
elif arr.dtype.kind == 'f':
arr = img_as_uint(arr)
mode = 'I;16'
mode_base = 'I'
elif arr.max() < 256 and arr.min() >= 0:
arr = arr.astype(np.uint8)
mode = 'L'
mode_base = 'L'
elif arr.max() < 2**16 and arr.min() >= 0:
arr = arr.astype(np.uint16)
mode = 'I;16'
mode_base = 'I'
else:
arr = img_as_int(arr)
mode = 'I'
mode_base = 'I'
im = Image.new(mode_base, arr.T.shape)
im.fromstring(arr.tostring(), 'raw', mode)
return im
def imsave(fname, arr, format_str=None):
"""Save an image to disk.
Parameters
----------
fname : str or file-like object
Name of destination file.
arr : ndarray of uint8 or float
Array (image) to save. Arrays of data-type uint8 should have
values in [0, 255], whereas floating-point arrays must be
in [0, 1].
format_str: str
Format to save as, this is defaulted to PNG if using a file-like
object; this will be derived from the extension if fname is a string
Notes
-----
Currently, only 8-bit precision is supported for PNG and JPEG.
Images that are not uint8 type will be converted using
`skimage.img_as_ubyte`.
2D TIFF Files also support unit16 and float32 type images.
"""
# default to PNG if file-like object
if not isinstance(fname, string_types) and format_str is None:
format_str = "PNG"
img = ndarray_to_pil(arr, format_str=None)
img.save(fname, format=format_str)
def imshow(arr):
"""Display an image, using PIL's default display command.
Parameters
----------
arr : ndarray
Image to display. Images of dtype float are assumed to be in
[0, 1]. Images of dtype uint8 are in [0, 255].
"""
Image.fromarray(img_as_ubyte(arr)).show()
def _app_show():
pass