mirror of
https://github.com/wassname/scikit-image.git
synced 2026-06-28 03:19:12 +08:00
emmanuelle
a5a771a8e4
background=0 by default. Modified label function so that background pixels are labeled with 0, and background=0 by default. All tests of _ccomp.pyx pass Modified a couple of files to be consistent with the new behavior of measure.label Modified doctring of label to pass doctest Modified TODO.txt as well as release notes to mention the new behavior of label. Typo in docstring Typo in docstring Changed default value of kw argument background in measure.label Removed unnecessary and outdated comment
58 lines
1.5 KiB
Python
58 lines
1.5 KiB
Python
"""
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===================
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Label image regions
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===================
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This example shows how to segment an image with image labelling. The following
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steps are applied:
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1. Thresholding with automatic Otsu method
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2. Close small holes with binary closing
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3. Remove artifacts touching image border
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4. Measure image regions to filter small objects
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"""
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import numpy as np
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import matplotlib.pyplot as plt
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import matplotlib.patches as mpatches
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from skimage import data
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from skimage.filters import threshold_otsu
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from skimage.segmentation import clear_border
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from skimage.measure import label
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from skimage.morphology import closing, square
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from skimage.measure import regionprops
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from skimage.color import label2rgb
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image = data.coins()[50:-50, 50:-50]
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# apply threshold
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thresh = threshold_otsu(image)
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bw = closing(image > thresh, square(3))
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# remove artifacts connected to image border
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cleared = bw.copy()
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clear_border(cleared)
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# label image regions
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label_image = label(cleared)
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image_label_overlay = label2rgb(label_image, image=image)
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fig, ax = plt.subplots(ncols=1, nrows=1, figsize=(6, 6))
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ax.imshow(image_label_overlay)
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for region in regionprops(label_image):
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# skip small images
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if region.area < 100:
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continue
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# draw rectangle around segmented coins
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minr, minc, maxr, maxc = region.bbox
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rect = mpatches.Rectangle((minc, minr), maxc - minc, maxr - minr,
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fill=False, edgecolor='red', linewidth=2)
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ax.add_patch(rect)
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plt.show()
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