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scikit-image/skimage/exposure/unwrap.py
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2013-11-22 10:45:06 +01:00

75 lines
3.1 KiB
Python

import numpy as np
from ._unwrap_2d import unwrap_2d
from ._unwrap_3d import unwrap_3d
from .._shared.six import string_types
def unwrap(image, wrap_around=False):
'''From ``image``, wrapped to lie in the interval [-pi, pi), recover the
original, unwrapped image.
Parameters
----------
image : 2D or 3D ndarray of floats, optionally a masked array
The values should be in the range ``[-pi, pi)``. If a masked array is
provided, the masked entries will not be changed, and their values
will not be used to guide the unwrapping of neighboring, unmasked
values.
wrap_around : bool or sequence of bool
When an element of the sequence is ``True``, the unwrapping process
will regard the edges along the corresponding axis of the image to be
connected and use this connectivity to guide the phase unwrapping
process. If only a single boolean is given, it will apply to all axes.
Returns
-------
image_unwrapped : array_like, float32
Unwrapped image of the same shape as the input. If the input ``image``
was a masked array, the mask will be preserved.
References
----------
.. [1] Miguel Arevallilo Herraez, David R. Burton, Michael J. Lalor,
and Munther A. Gdeisat, "Fast two-dimensional phase-unwrapping
algorithm based on sorting by reliability following a noncontinuous
path", Journal Applied Optics, Vol. 41, No. 35 (2002) 7437,
.. [2] Abdul-Rahman, H., Gdeisat, M., Burton, D., & Lalor, M., "Fast
three-dimensional phase-unwrapping algorithm based on sorting by
reliability following a non-continuous path. In W. Osten,
C. Gorecki, & E. L. Novak (Eds.), Optical Metrology (2005) 32--40,
International Society for Optics and Photonics.
'''
if image.ndim not in (2, 3):
raise ValueError('image must be 2 or 3 dimensional')
if isinstance(wrap_around, bool):
wrap_around = [wrap_around] * image.ndim
elif (hasattr(wrap_around, '__getitem__')
and not isinstance(wrap_around, string_types)):
if not len(wrap_around) == image.ndim:
raise ValueError('Length of wrap_around must equal the '
'dimensionality of image')
wrap_around = [bool(wa) for wa in wrap_around]
else:
raise ValueError('wrap_around must be a bool or a sequence with '
'length equal to the dimensionality of image')
if np.ma.isMaskedArray(image):
mask = np.require(image.mask, np.uint8, ['C'])
else:
mask = np.zeros(image.shape, dtype=np.uint8, order='C')
image_not_masked = np.asarray(image, dtype=np.float32, order='C')
image_unwrapped = np.empty(image.shape, dtype=np.float32)
if image.ndim == 2:
unwrap_2d(image_not_masked, mask, image_unwrapped,
wrap_around)
elif image.ndim == 3:
unwrap_3d(image_not_masked, mask, image_unwrapped,
wrap_around)
if np.ma.isMaskedArray(image):
return np.ma.array(image_unwrapped, mask=mask)
else:
return image_unwrapped