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170 lines
6.1 KiB
Python
170 lines
6.1 KiB
Python
import numpy as np
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from scipy.signal import fftconvolve
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from skimage.util import pad
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def _window_sum_2d(image, window_shape):
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window_sum = np.cumsum(image, axis=0)
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window_sum = (window_sum[window_shape[0]:-1]
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- window_sum[:-window_shape[0]-1])
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window_sum = np.cumsum(window_sum, axis=1)
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window_sum = (window_sum[:, window_shape[1]:-1]
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- window_sum[:, :-window_shape[1]-1])
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return window_sum
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def _window_sum_3d(image, window_shape):
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window_sum = _window_sum_2d(image, window_shape)
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window_sum = np.cumsum(window_sum, axis=2)
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window_sum = (window_sum[:, :, window_shape[2]:-1]
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- window_sum[:, :, :-window_shape[2]-1])
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return window_sum
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def match_template(image, template, pad_input=False, mode='constant',
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constant_values=0):
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"""Match a template to a 2-D or 3-D image using normalized correlation.
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The output is an array with values between -1.0 and 1.0. The value at a
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given position corresponds to the correlation coefficient between the image
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and the template. The template is centered around each position. To find
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the best match you must search for peaks in the response image.
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Parameters
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----------
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image : (N, M[, D]) array
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2-D or 3-D input image.
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template : (N, M[, D]) array
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Template to locate.
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pad_input : bool
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If True, pad `image` with image mean so that output is the same size as
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the image, and output values correspond to the template center.
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Otherwise, the output is an array with shape `(M - m + 1, N - n + 1)`
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for an `(M, N)` image and an `(m, n)` template, and matches correspond
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to origin (top-left corner) of the template.
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mode : see `numpy.pad`, optional
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Padding mode.
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constant_values : see `numpy.pad`, optional
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Constant values used in conjunction with ``mode='constant'``.
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Returns
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-------
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output : ndarray
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Correlation results between -1.0 and 1.0. For an `(M, N)` image and an
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`(m, n)` template, the `output` is `(M - m + 1, N - n + 1)` when
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`pad_input = False` and `(M, N)` when `pad_input = True`.
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References
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----------
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.. [1] Briechle and Hanebeck, "Template Matching using Fast Normalized
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Cross Correlation", Proceedings of the SPIE (2001).
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.. [2] J. P. Lewis, "Fast Normalized Cross-Correlation", Industrial Light
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and Magic.
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Examples
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--------
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>>> template = np.zeros((3, 3))
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>>> template[1, 1] = 1
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>>> template
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array([[ 0., 0., 0.],
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[ 0., 1., 0.],
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[ 0., 0., 0.]])
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>>> image = np.zeros((6, 6))
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>>> image[1, 1] = 1
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>>> image[4, 4] = -1
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>>> image
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array([[ 0., 0., 0., 0., 0., 0.],
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[ 0., 1., 0., 0., 0., 0.],
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[ 0., 0., 0., 0., 0., 0.],
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[ 0., 0., 0., 0., 0., 0.],
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[ 0., 0., 0., 0., -1., 0.],
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[ 0., 0., 0., 0., 0., 0.]])
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>>> result = match_template(image, template)
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>>> np.round(result, 3)
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array([[ 1. , -0.125, 0. , 0. ],
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[-0.125, -0.125, 0. , 0. ],
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[ 0. , 0. , 0.125, 0.125],
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[ 0. , 0. , 0.125, -1. ]], dtype=float32)
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>>> result = match_template(image, template, pad_input=True)
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>>> np.round(result, 3)
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array([[-0.125, -0.125, -0.125, 0. , 0. , 0. ],
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[-0.125, 1. , -0.125, 0. , 0. , 0. ],
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[-0.125, -0.125, -0.125, 0. , 0. , 0. ],
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[ 0. , 0. , 0. , 0.125, 0.125, 0.125],
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[ 0. , 0. , 0. , 0.125, -1. , 0.125],
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[ 0. , 0. , 0. , 0.125, 0.125, 0.125]], dtype=float32)
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"""
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if image.ndim not in (2, 3) or template.ndim not in (2, 3):
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raise ValueError("Only 2- and 3-D images supported.")
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if image.ndim != template.ndim:
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raise ValueError("Dimensionality of template must match image.")
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if np.any(np.less(image.shape, template.shape)):
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raise ValueError("Image must be larger than template.")
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image_shape = image.shape
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image = np.array(image, dtype=np.float32, copy=False)
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pad_width = tuple((width, width) for width in template.shape)
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if mode == 'constant':
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image = pad(image, pad_width=pad_width, mode=mode,
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constant_values=constant_values)
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else:
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image = pad(image, pad_width=pad_width, mode=mode)
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# Use special case for 2-D images for much better performance in
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# computation of integral images
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if image.ndim == 2:
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image_window_sum = _window_sum_2d(image, template.shape)
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image_window_sum2 = _window_sum_2d(image**2, template.shape)
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elif image.ndim == 3:
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image_window_sum = _window_sum_3d(image, template.shape)
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image_window_sum2 = _window_sum_3d(image**2, template.shape)
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template_volume = np.prod(template.shape)
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template_ssd = np.sum((template - template.mean())**2)
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if image.ndim == 2:
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xcorr = fftconvolve(image, template[::-1, ::-1],
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mode="valid")[1:-1, 1:-1]
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elif image.ndim == 3:
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xcorr = fftconvolve(image, template[::-1, ::-1, ::-1],
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mode="valid")[1:-1, 1:-1, 1:-1]
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nom = xcorr - image_window_sum * (template.sum() / template_volume)
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denom = image_window_sum2
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np.multiply(image_window_sum, image_window_sum, out=image_window_sum)
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np.divide(image_window_sum, template_volume, out=image_window_sum)
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denom -= image_window_sum
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denom *= template_ssd
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np.maximum(denom, 0, out=denom) # sqrt of negative number not allowed
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np.sqrt(denom, out=denom)
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response = np.zeros_like(xcorr, dtype=np.float32)
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# avoid zero-division
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mask = denom > np.finfo(np.float32).eps
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response[mask] = nom[mask] / denom[mask]
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slices = []
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for i in range(template.ndim):
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if pad_input:
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d0 = (template.shape[i] - 1) // 2
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d1 = d0 + image_shape[i]
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else:
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d0 = template.shape[i] - 1
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d1 = d0 + image_shape[i] - template.shape[i] + 1
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slices.append(slice(d0, d1))
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return response[slices]
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