diff --git a/README.rst b/README.rst index 71d5af88..1c645334 100644 --- a/README.rst +++ b/README.rst @@ -17,7 +17,7 @@ SimPEG :target: https://github.com/simpeg/simpeg/blob/master/LICENSE :alt: BSD 3 clause license. -.. image:: https://img.shields.io/travis/simpeg/simpeg.svg +.. image:: https://api.travis-ci.org/simpeg/simpeg.svg?branch=master :target: https://travis-ci.org/simpeg/simpeg :alt: Travis CI build status diff --git a/SimPEG/EM/TDEM/BaseTDEM.py b/SimPEG/EM/TDEM/BaseTDEM.py index e36d76b8..4d4b39a7 100644 --- a/SimPEG/EM/TDEM/BaseTDEM.py +++ b/SimPEG/EM/TDEM/BaseTDEM.py @@ -31,7 +31,7 @@ class FieldsTDEM(Problem.TimeFields): class BaseTDEMProblem(BaseTimeProblem, BaseEMProblem): - """docstring for ProblemTDEM1D""" + """docstring for BaseTDEMProblem""" def __init__(self, mesh, mapping=None, **kwargs): BaseTimeProblem.__init__(self, mesh, mapping=mapping, **kwargs) @@ -43,7 +43,7 @@ class BaseTDEMProblem(BaseTimeProblem, BaseEMProblem): # Create a fields storage object F = self._FieldsForward_pair(self.mesh, self.survey) for src in self.survey.srcList: - # Set the initial conditions + # Set the initial conditions F[src,:,0] = src.getInitialFields(self.mesh) F = self.forward(m, self.getRHS, F=F) if self.verbose: print '%s\nDone calculating fields(m)\n%s'%('*'*50,'*'*50) diff --git a/SimPEG/EM/TDEM/SurveyTDEM.py b/SimPEG/EM/TDEM/SurveyTDEM.py index 7f6e5c04..6a65c0fe 100644 --- a/SimPEG/EM/TDEM/SurveyTDEM.py +++ b/SimPEG/EM/TDEM/SurveyTDEM.py @@ -99,14 +99,33 @@ class SrcTDEM_VMD_MVP(SrcTDEM): class SrcTDEM_CircularLoop_MVP(SrcTDEM): - - def __init__(self,rxList,loc,radius): + def __init__(self,rxList,loc,radius,waveformType): self.loc = loc self.radius = radius - SrcTDEM.__init__(self,rxList) + self.waveformType = waveformType + SrcTDEM.__init__(self,rxList) def getInitialFields(self, mesh): """Circular Loop, magnetic vector potential""" + if self.waveformType == "STEPOFF": + print ">> Step waveform: Non-zero initial condition" + if mesh._meshType is 'CYL': + if mesh.isSymmetric: + MVP = MagneticLoopVectorPotential(self.loc, mesh, 'Ey', self.radius) + else: + raise NotImplementedError('Non-symmetric cyl mesh not implemented yet!') + elif mesh._meshType is 'TENSOR': + MVP = MagneticLoopVectorPotential(self.loc, mesh, ['Ex','Ey','Ez'], self.radius) + else: + raise Exception('Unknown mesh for CircularLoop') + return {"b": mesh.edgeCurl*MVP} + elif self.waveformType == "GENERAL": + print ">> General waveform: Zero initial condition" + return {"b": np.zeros(mesh.nF)} + else: + raise NotImplementedError("Only use STEPOFF or GENERAL") + + def getMeS(self, mesh, MfMui): if mesh._meshType is 'CYL': if mesh.isSymmetric: MVP = MagneticLoopVectorPotential(self.loc, mesh, 'Ey', self.radius) @@ -115,9 +134,8 @@ class SrcTDEM_CircularLoop_MVP(SrcTDEM): elif mesh._meshType is 'TENSOR': MVP = MagneticLoopVectorPotential(self.loc, mesh, ['Ex','Ey','Ez'], self.radius) else: - raise Exception('Unknown mesh for CircularLoop') - - return {"b": mesh.edgeCurl*MVP} + raise Exception('Unknown mesh for CircularLoop') + return mesh.edgeCurl.T*MfMui*mesh.edgeCurl*MVP class SurveyTDEM(Survey.BaseSurvey): diff --git a/SimPEG/Examples/EM_FDEM_Analytic_MagDipoleWholespace.py b/SimPEG/Examples/EM_FDEM_Analytic_MagDipoleWholespace.py new file mode 100644 index 00000000..15ff9f62 --- /dev/null +++ b/SimPEG/Examples/EM_FDEM_Analytic_MagDipoleWholespace.py @@ -0,0 +1,43 @@ +from SimPEG import * +import SimPEG.EM as EM + +def run(XYZ=None, loc=np.r_[0.,0.,0.], sig=1.0, freq=1.0, orientation='Z', plotIt=True): + """ + EM: Magnetic Dipole in a Whole-Space + ==================================== + + Here we plot the magnetic flux density from a harmonic dipole in a wholespace. + + """ + + if XYZ is None: + x = np.arange(-100.5,100.5,step = 1.) #(avoid putting measurement points where source is located) + y = np.r_[0] + z = x + XYZ = Utils.ndgrid(x,y,z) + + + Bx, By, Bz = EM.Analytics.FDEM.MagneticDipoleWholeSpace(XYZ, loc, sig, freq, orientation=orientation) + absB = np.sqrt(Bx*Bx.conj()+By*By.conj()+Bz*Bz.conj()).real + + + if plotIt: + import matplotlib.pyplot as plt + from matplotlib.colors import LogNorm + fig, ax = plt.subplots(1,1,figsize=(6,5)) + bxplt = Bx.reshape(x.size,z.size) + bzplt = Bz.reshape(x.size,z.size) + pc = ax.pcolor(x,z,absB.reshape(x.size,z.size),norm=LogNorm()) + ax.streamplot(x,z,bxplt.real,bzplt.real,color='k',density=1) + ax.set_xlim([x.min(),x.max()]) + ax.set_ylim([z.min(),z.max()]) + ax.set_xlabel('x') + ax.set_ylabel('z') + cb = plt.colorbar(pc,ax = ax) + cb.set_label('|B| (T)') + plt.show() + + return fig, ax + +if __name__ == '__main__': + run() diff --git a/SimPEG/Examples/EM_FDEM_1D_Inversion.py b/SimPEG/Examples/EM_TDEM_1D_Inversion.py similarity index 97% rename from SimPEG/Examples/EM_FDEM_1D_Inversion.py rename to SimPEG/Examples/EM_TDEM_1D_Inversion.py index aba70f4b..d4d80e55 100644 --- a/SimPEG/Examples/EM_FDEM_1D_Inversion.py +++ b/SimPEG/Examples/EM_TDEM_1D_Inversion.py @@ -5,10 +5,10 @@ from scipy.constants import mu_0 def run(plotIt=True): """ - EM: FDEM: 1D: Inversion + EM: TDEM: 1D: Inversion ======================= - Here we will create and run a FDEM 1D inversion. + Here we will create and run a TDEM 1D inversion. """ diff --git a/SimPEG/Examples/__init__.py b/SimPEG/Examples/__init__.py index 8431e4ba..7ef15451 100644 --- a/SimPEG/Examples/__init__.py +++ b/SimPEG/Examples/__init__.py @@ -1,7 +1,8 @@ # Run this file to add imports. ##### AUTOIMPORTS ##### -import EM_FDEM_1D_Inversion +import EM_FDEM_Analytic_MagDipoleWholespace +import EM_TDEM_1D_Inversion import FLOW_Richards_1D_Celia1990 import Forward_BasicDirectCurrent import Inversion_Linear @@ -13,7 +14,7 @@ import Mesh_QuadTree_FaceDiv import Mesh_QuadTree_HangingNodes import Mesh_Tensor_Creation -__examples__ = ["EM_FDEM_1D_Inversion", "FLOW_Richards_1D_Celia1990", "Forward_BasicDirectCurrent", "Inversion_Linear", "Mesh_Basic_PlotImage", "Mesh_Basic_Types", "Mesh_Operators_CahnHilliard", "Mesh_QuadTree_Creation", "Mesh_QuadTree_FaceDiv", "Mesh_QuadTree_HangingNodes", "Mesh_Tensor_Creation"] +__examples__ = ["EM_FDEM_Analytic_MagDipoleWholespace", "EM_TDEM_1D_Inversion", "FLOW_Richards_1D_Celia1990", "Forward_BasicDirectCurrent", "Inversion_Linear", "Mesh_Basic_PlotImage", "Mesh_Basic_Types", "Mesh_Operators_CahnHilliard", "Mesh_QuadTree_Creation", "Mesh_QuadTree_FaceDiv", "Mesh_QuadTree_HangingNodes", "Mesh_Tensor_Creation"] ##### AUTOIMPORTS ##### @@ -28,16 +29,17 @@ if __name__ == '__main__': from SimPEG import Examples # Create the examples dir in the docs folder. - docExamplesDir = os.path.sep.join(os.path.realpath(__file__).split(os.path.sep)[:-3] + ['docs', 'examples']) + fName = os.path.realpath(__file__) + docExamplesDir = os.path.sep.join(fName.split(os.path.sep)[:-3] + ['docs', 'examples']) shutil.rmtree(docExamplesDir) os.makedirs(docExamplesDir) # Get all the python examples in this folder - thispath = os.path.sep.join(__file__.split(os.path.sep)[:-1]) + thispath = os.path.sep.join(fName.split(os.path.sep)[:-1]) exfiles = [f[:-3] for f in os.listdir(thispath) if os.path.isfile(os.path.join(thispath, f)) and f.endswith('.py') and not f.startswith('_')] # Add the imports to the top in the AUTOIMPORTS section - f = file(__file__, 'r') + f = file(fName, 'r') inimports = False out = '' for line in f: @@ -52,7 +54,7 @@ if __name__ == '__main__': out += '\n##### AUTOIMPORTS #####\n' f.close() - f = file(__file__, 'w') + f = file(fName, 'w') f.write(out) f.close() diff --git a/SimPEG/Problem.py b/SimPEG/Problem.py index 607cff5b..be29ff01 100644 --- a/SimPEG/Problem.py +++ b/SimPEG/Problem.py @@ -158,6 +158,9 @@ class BaseProblem(object): class BaseTimeProblem(BaseProblem): """Sets up that basic needs of a time domain problem.""" + + waveformType = "STEPOFF" + current = None @property def timeSteps(self): @@ -184,6 +187,11 @@ class BaseTimeProblem(BaseProblem): self._timeSteps = Utils.meshTensor(value) del self.timeMesh + def currentwaveform(self, wave): + self._timeSteps = np.diff(wave[:,0]) + self.current = wave[:,1] + self.waveformType = "GENERAL" + @property def nT(self): "Number of time steps." diff --git a/SimPEG/Regularization.py b/SimPEG/Regularization.py index 2ab7362f..677fba5c 100644 --- a/SimPEG/Regularization.py +++ b/SimPEG/Regularization.py @@ -24,7 +24,7 @@ class BaseRegularization(object): Utils.setKwargs(self, **kwargs) self.mesh = mesh assert isinstance(mesh, Mesh.BaseMesh), "mesh must be a SimPEG.Mesh object." - self.mapping = mapping or Maps.IdentityMap(mesh) + self.mapping = mapping or self.mapPair(mesh) self.mapping._assertMatchesPair(self.mapPair) self.indActive = indActive diff --git a/docs/examples/EM_FDEM_Analytic_MagDipoleWholespace.rst b/docs/examples/EM_FDEM_Analytic_MagDipoleWholespace.rst new file mode 100644 index 00000000..0e1b2d93 --- /dev/null +++ b/docs/examples/EM_FDEM_Analytic_MagDipoleWholespace.rst @@ -0,0 +1,26 @@ +.. _examples_EM_FDEM_Analytic_MagDipoleWholespace: + +.. --------------------------------- .. +.. .. +.. THIS FILE IS AUTO GENEREATED .. +.. .. +.. SimPEG/Examples/__init__.py .. +.. .. +.. --------------------------------- .. + + +EM: Magnetic Dipole in a Whole-Space +==================================== + +Here we plot the magnetic flux density from a harmonic dipole in a wholespace. + + + +.. plot:: + + from SimPEG import Examples + Examples.EM_FDEM_Analytic_MagDipoleWholespace.run() + +.. literalinclude:: ../../SimPEG/Examples/EM_FDEM_Analytic_MagDipoleWholespace.py + :language: python + :linenos: diff --git a/docs/examples/EM_FDEM_1D_Inversion.rst b/docs/examples/EM_TDEM_1D_Inversion.rst similarity index 64% rename from docs/examples/EM_FDEM_1D_Inversion.rst rename to docs/examples/EM_TDEM_1D_Inversion.rst index acbc8cdc..53f6f9ef 100644 --- a/docs/examples/EM_FDEM_1D_Inversion.rst +++ b/docs/examples/EM_TDEM_1D_Inversion.rst @@ -1,4 +1,4 @@ -.. _examples_EM_FDEM_1D_Inversion: +.. _examples_EM_TDEM_1D_Inversion: .. --------------------------------- .. .. .. @@ -9,18 +9,18 @@ .. --------------------------------- .. -EM: FDEM: 1D: Inversion +EM: TDEM: 1D: Inversion ======================= -Here we will create and run a FDEM 1D inversion. +Here we will create and run a TDEM 1D inversion. .. plot:: from SimPEG import Examples - Examples.EM_FDEM_1D_Inversion.run() + Examples.EM_TDEM_1D_Inversion.run() -.. literalinclude:: ../../SimPEG/Examples/EM_FDEM_1D_Inversion.py +.. literalinclude:: ../../SimPEG/Examples/EM_TDEM_1D_Inversion.py :language: python :linenos: diff --git a/docs/index.rst b/docs/index.rst index be173aae..4ce06163 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -44,6 +44,15 @@ About SimPEG api_bigPicture api_installing +Examples +******** + +.. toctree:: + :maxdepth: 2 + + api_Examples + + Packages ******** @@ -53,14 +62,6 @@ Packages em/index flow/index -Examples -******** - -.. toctree:: - :maxdepth: 2 - - api_Examples - Finite Volume *************