diff --git a/notebooks/VisualizeWithvtkView-updated..ipynb b/notebooks/VisualizeWithvtkView-updated..ipynb deleted file mode 100644 index 6dabae72..00000000 --- a/notebooks/VisualizeWithvtkView-updated..ipynb +++ /dev/null @@ -1,142 +0,0 @@ -{ - "metadata": { - "name": "VisualizeWithvtkView-updated." - }, - "nbformat": 3, - "nbformat_minor": 0, - "worksheets": [ - { - "cells": [ - { - "cell_type": "code", - "collapsed": false, - "input": [ - "import SimPEG as simpeg, matplotlib as mpl" - ], - "language": "python", - "metadata": {}, - "outputs": [ - { - "output_type": "stream", - "stream": "stdout", - "text": [ - "The history saving thread hit an unexpected error (OperationalError('disk I/O error',)).History will not be written to the database.\n", - "Warning: mumps solver not available." - ] - }, - { - "output_type": "stream", - "stream": "stdout", - "text": [ - "\n" - ] - } - ], - "prompt_number": 1 - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "Simple notebook of how to use vtkView to visualize SimPEG models. It will pop-up external vtk windows." - ] - }, - { - "cell_type": "code", - "collapsed": false, - "input": [ - "# Make a mesh and model\n", - "x0 = np.zeros(3)\n", - "h1 = np.ones(60)*50\n", - "h2 = np.ones(60)*100\n", - "h3 = np.ones(50)*200\n", - "\n", - "mesh = simpeg.mesh.TensorMesh([h1,h2,h3],x0)\n", - "\n", - "# Make a models that correspond to the cells, faces and edges.\n", - "t = np.ones(mesh.nC)\n", - "t[10000:50000] = 100\n", - "t[100000:120000] = 100\n", - "t[100000:120000] = 50\n", - "# Make models called 'Test' for all with a range. \n", - "models = {'C':{'Test':np.arange(0,mesh.nC),'Model':t},'F':{'Test':np.arange(0,mesh.nF)},'E':{'Test':np.arange(0,mesh.nE)}}\n" - ], - "language": "python", - "metadata": {}, - "outputs": [], - "prompt_number": 2 - }, - { - "cell_type": "code", - "collapsed": false, - "input": [ - "# Make the vtk viewer object.\n", - "vtkViewer = simpeg.visualize.vtk.vtkView(mesh,models)\n", - "# Set the .viewprop for which model to view\n", - "vtkViewer.viewprop = {'F':'Test'}\n", - "# Show the image\n", - "vtkViewer.Show()\n", - "\n" - ], - "language": "python", - "metadata": {}, - "outputs": [], - "prompt_number": 3 - }, - { - "cell_type": "code", - "collapsed": false, - "input": [ - "# Set subset of the mesh to view (remove padding)\n", - "vtkViewer.extent = [4,14,0,7,0,3]\n", - "vtkViewer.Show()\n", - "\n", - "# Change viewing property \n", - "vtkViewer.viewprop = {'C':'Model'}\n", - "# Set the color range\n", - "# Reset extent. Error check will reset the limits correctly.\n", - "vtkViewer.extent = [-1,1000,-1,1000,-1,1000]\n", - "# Set the range\n", - "vtkViewer.range = [0.,100.]\n", - "# Show\n", - "vtkViewer.Show()\n" - ], - "language": "python", - "metadata": {}, - "outputs": [ - { - "output_type": "stream", - "stream": "stderr", - "text": [ - "/home/Gudni/Codes/python/simpeg/SimPEG/visualize/vtk/vtkView.py:116: UserWarning: Lower bounds smaller then 0\n", - " warnings.warn('Lower bounds smaller then 0')\n", - "/home/Gudni/Codes/python/simpeg/SimPEG/visualize/vtk/vtkView.py:128: UserWarning: Upper bounds greater then number of cells\n", - " warnings.warn('Upper bounds greater then number of cells')\n", - "/home/Gudni/Codes/python/simpeg/SimPEG/visualize/vtk/vtkView.py:137: UserWarning: Changed given extent from [-1, 1000, -1, 1000, -1, 1000] to [0, 59, 0, 59, 0, 49]\n", - " warnings.warn('Changed given extent from {:s} to {:s}'.format(value,valnp.tolist()))\n" - ] - } - ], - "prompt_number": 4 - }, - { - "cell_type": "code", - "collapsed": false, - "input": [ - "# Change color scale, has to be set to bytes=True.\n", - "vtkViewer.cmap = mpl.cm.copper(np.arange(0.,1.,0.01),bytes=True)\n", - "vtkViewer.Show()\n", - "# Set limits of values to view \n", - "vtkViewer.limits = [5.0,100.0]\n", - "vtkViewer.Show()" - ], - "language": "python", - "metadata": {}, - "outputs": [], - "prompt_number": 5 - } - ], - "metadata": {} - } - ] -} \ No newline at end of file