From 7b9ca74465316cda9a38028834fcb2a2dd27661a Mon Sep 17 00:00:00 2001
From: Luz Angelica Caudillo Mata <lacmajedrez@gmail.com>
Date: Mon, 22 Jul 2013 15:27:35 -0700
Subject: [PATCH] Implementation 3 conductivity models: block, 2 layered,
 analytic expression.

---
 SimPEG/parameters.py | 191 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 191 insertions(+)
 create mode 100644 SimPEG/parameters.py

diff --git a/SimPEG/parameters.py b/SimPEG/parameters.py
new file mode 100644
index 00000000..926d246a
--- /dev/null
+++ b/SimPEG/parameters.py
@@ -0,0 +1,191 @@
+import numpy as np
+import TensorMesh as tm
+import TensorView as tv
+
+
+def getIndecesBlock(p0,p1,ccMesh):
+    """
+    Creates a vector containing the block indexes in the cell centerd mesh. 
+    Returns a tuple 
+    
+    The block is defined by the points
+    p0 : describe the position of the left  upper  front corner, and 
+    p1 : describe the position of the right bottom back  corner.
+    
+    ccMesh represents the cell-centered mesh
+    
+    The points p0 and p1 must live in the the same dimensional space as the mesh.    
+    """
+    
+    # Validation of the input
+    assert type(p0) == np.ndarray, "Vector must be a numpy array"
+    assert type(p1) == np.ndarray, "Vector must be a numpy array"
+    
+    # Validation: p0 and p1 live in the same dimensional space
+    assert len(p0) == len(p1), "Dimension mismatch. len(p0) != len(p1)"
+
+    # Validation: mesh and points live in the same dimensional space
+    dimMesh = np.size(ccMesh[0,:])
+    assert len(p0) == dimMesh, "Dimension mismatch. len(p0) != dimMesh"
+    
+    if dimMesh == 1:
+       # Define the reference points
+        x1 = p0[0]   
+        x2 = p1[0]   
+  
+        indX = (x1 <= ccMesh[:,0]) & (ccMesh[:,0] <= x2)
+        ind  = np.where(indX)
+          
+    elif dimMesh == 2:
+       # Define the reference points
+        x1 = p0[0]   
+        y1 = p0[1]  
+    
+        x2 = p1[0]   
+        y2 = p1[1]  
+    
+        indX = (x1 <= ccMesh[:,0]) & (ccMesh[:,0] <= x2)
+        indY = (y1 <= ccMesh[:,1]) & (ccMesh[:,1] <= y2)
+    
+        ind  = np.where(indX & indY)
+   
+    else:
+        # Define the points
+        x1 = p0[0]   
+        y1 = p0[1]  
+        z1 = p0[2]
+    
+        x2 = p1[0]   
+        y2 = p1[1]  
+        z2 = p1[2]
+    
+        indX = (x1 <= ccMesh[:,0]) & (ccMesh[:,0] <= x2)
+        indY = (y1 <= ccMesh[:,1]) & (ccMesh[:,1] <= y2)
+        indZ = (z1 <= ccMesh[:,2]) & (ccMesh[:,2] <= z2)
+    
+        ind  = np.where(indX & indY & indZ)
+
+    # Return a tuple
+    return ind
+
+def defineBlockConductivity(p0,p1,ccMesh,condVals):
+    """
+    Build a block with the conductivity specified by condVal.  Returns an array.
+    condVals[0]  conductivity of the block
+    condVals[1]  conductivity of the ground
+    """
+    sigma = np.zeros(ccMesh.shape[0]) + condVals[1]
+    ind   = getIndecesBlock(p0,p1,ccMesh)
+    
+    sigma[ind] = condVals[0]
+    
+    return sigma
+    
+def defineTwoLayeredConductivity(depth,ccMesh,condVals):
+    """
+    Define a two layered model.  Depth of the first layer must be specified.
+    CondVals vector with the conductivity values of the layers.  Eg:
+    
+    Convention to number the layers:  
+        <----------------------------|------------------------------------>
+        0                          depth                                 zf
+             1st layer                       2nd layer
+    """
+    sigma = np.zeros(ccMesh.shape[0]) + condVals[1]
+   
+    dim = np.size(ccMesh[0,:])
+   
+    p0 = np.zeros(dim)
+    p1 = np.zeros(dim)
+    
+    # Identify 1st cell centered reference point
+    p0[0] = ccMesh[0,0]
+    p0[1] = ccMesh[0,1]
+    p0[2] = ccMesh[0,2]
+
+    # Identify the last cell-centered reference point
+    p1[0] = ccMesh[-1,0]
+    p1[1] = ccMesh[-1,1]
+    p1[2] = ccMesh[-1,2] - depth;
+    
+    ind   = getIndecesBlock(p0,p1,ccMesh)
+    
+    sigma[ind] = condVals[0];
+        
+    return sigma
+ 
+def scalarConductivity(ccMesh,pFunction):
+    """
+    Define the distribution conductivity in the mesh according to the 
+    analytical expression given in pFunction   
+    """
+    xCC = ccMesh[:,0]
+    yCC = ccMesh[:,1]
+    zCC = ccMesh[:,2]
+     
+    sigma = pFunction(xCC,yCC,zCC)
+     
+    return sigma
+
+if __name__ == '__main__':
+    
+    # Define the mesh
+ 
+    testDim = 3
+    h1 = 0.3*np.ones((1, 7))
+    h1[:, 0] = 0.5
+    h1[:, -1] = 0.6
+    h2 = .5 * np.ones((1, 4))
+    h3 = .4 * np.ones((1, 6))
+    x0 = np.zeros((3, 1))
+
+    if testDim == 1:
+        h = [h1]
+        x0 = x0[0]
+    elif testDim == 2:
+        h = [h1, h2]
+        x0 = x0[0:2]
+    else:
+        h = [h1, h2, h3]
+
+    M = tm.TensorMesh(h, x0)
+    
+    ccMesh = M.gridCC
+   
+    
+    
+
+    # ------------------- Test conductivities! --------------------------
+    print('Testing 1 block conductivity')
+    
+    p0 = np.array([0.5,0.5,0.5])
+    p1 = np.array([1.0,1.0,1.0])
+    condVals = np.array([100,1e-6])
+    
+    sigma = defineBlockConductivity(p0,p1,ccMesh,condVals)    
+
+    #M.plotImage(sigma)
+    print sigma
+    print 'Done with block! :)'
+    
+    # -----------------------------------------
+    print('Testing the two layered model') 
+    condVals = np.array([100,1e-5]);
+    depth    = 1.0;
+    
+    sigma = defineTwoLayeredConductivity(depth,ccMesh,condVals)
+    
+    print sigma
+    print 'layer model!'
+    
+    # -----------------------------------------
+    print('Testing scalar conductivity')
+    
+    pFunction = lambda x,y,z: np.exp(x+y+z)
+    
+    sigma = scalarConductivity(ccMesh,pFunction)
+    
+    print sigma
+    print 'Scalar conductivity defined!'
+    
+    # -----------------------------------------