import numpy as np from scipy import sparse as sp from matutils import mkvc, ndgrid, sub2ind, sdiag from codeutils import asArray_N_x_Dim from codeutils import isScalar import os def exampleLrmGrid(nC, exType): assert type(nC) == list, "nC must be a list containing the number of nodes" assert len(nC) == 2 or len(nC) == 3, "nC must either two or three dimensions" exType = exType.lower() possibleTypes = ['rect', 'rotate'] assert exType in possibleTypes, "Not a possible example type." if exType == 'rect': return list(ndgrid([np.cumsum(np.r_[0, np.ones(nx)/nx]) for nx in nC], vector=False)) elif exType == 'rotate': if len(nC) == 2: X, Y = ndgrid([np.cumsum(np.r_[0, np.ones(nx)/nx]) for nx in nC], vector=False) amt = 0.5-np.sqrt((X - 0.5)**2 + (Y - 0.5)**2) amt[amt < 0] = 0 return [X + (-(Y - 0.5))*amt, Y + (+(X - 0.5))*amt] elif len(nC) == 3: X, Y, Z = ndgrid([np.cumsum(np.r_[0, np.ones(nx)/nx]) for nx in nC], vector=False) amt = 0.5-np.sqrt((X - 0.5)**2 + (Y - 0.5)**2 + (Z - 0.5)**2) amt[amt < 0] = 0 return [X + (-(Y - 0.5))*amt, Y + (-(Z - 0.5))*amt, Z + (-(X - 0.5))*amt] def meshTensor(value): """ **meshTensor** takes a list of numbers and tuples that have the form:: mT = [ float, (cellSize, numCell), (cellSize, numCell, factor) ] For example, a time domain mesh code needs many time steps at one time:: [(1e-5, 30), (1e-4, 30), 1e-3] Means take 30 steps at 1e-5 and then 30 more at 1e-4, and then one step of 1e-3. Tensor meshes can also be created by increase factors:: [(10.0, 5, -1.3), (10.0, 50), (10.0, 5, 1.3)] When there is a third number in the tuple, it refers to the increase factor, if this number is negative this section of the tensor is flipped right-to-left. .. plot:: from SimPEG import Mesh tx = [(10.0,10,-1.3),(10.0,40),(10.0,10,1.3)] ty = [(10.0,10,-1.3),(10.0,40)] M = Mesh.TensorMesh([tx, ty]) M.plotGrid(showIt=True) """ if type(value) is not list: raise Exception('meshTensor must be a list of scalars and tuples.') proposed = [] for v in value: if isScalar(v): proposed += [float(v)] elif type(v) is tuple and len(v) == 2: proposed += [float(v[0])]*int(v[1]) elif type(v) is tuple and len(v) == 3: start = float(v[0]) num = int(v[1]) factor = float(v[2]) pad = ((np.ones(num)*np.abs(factor))**(np.arange(num)+1))*start if factor < 0: pad = pad[::-1] proposed += pad.tolist() else: raise Exception('meshTensor must contain only scalars and len(2) or len(3) tuples.') return np.array(proposed) def closestPoints(mesh, pts, gridLoc='CC'): """ Move a list of points to the closest points on a grid. :param BaseMesh mesh: The mesh :param numpy.ndarray pts: Points to move :param string gridLoc: ['CC', 'N', 'Fx', 'Fy', 'Fz', 'Ex', 'Ex', 'Ey', 'Ez'] :rtype: numpy.ndarray :return: nodeInds """ pts = asArray_N_x_Dim(pts, mesh.dim) grid = getattr(mesh, 'grid' + gridLoc) nodeInds = np.empty(pts.shape[0], dtype=int) for i, pt in enumerate(pts): if mesh.dim == 1: nodeInds[i] = ((pt - grid)**2).argmin() else: nodeInds[i] = ((np.tile(pt, (grid.shape[0],1)) - grid)**2).sum(axis=1).argmin() return nodeInds def ExtractCoreMesh(xyzlim, mesh, meshType='tensor'): """ Extracts Core Mesh from Global mesh :param numpy.ndarray xyzlim: 2D array [ndim x 2] :param BaseMesh mesh: The mesh This function ouputs:: - actind: corresponding boolean index from global to core - meshcore: core SimPEG mesh Warning: 1D and 2D has not been tested """ from SimPEG import Mesh if mesh.dim == 1: xyzlim = xyzlim.flatten() xmin, xmax = xyzlim[0], xyzlim[1] xind = np.logical_and(mesh.vectorCCx>xmin, mesh.vectorCCxxmin) & (mesh.gridCC[:,0]ymin, mesh.vectorCCyzmin, mesh.vectorCCzxmin) & (mesh.gridCC[:,0]ymin) & (mesh.gridCC[:,1]xmin, mesh.vectorCCxymin, mesh.vectorCCyzmin, mesh.vectorCCzxmin) & (mesh.gridCC[:,0]ymin) & (mesh.gridCC[:,1]zmin) & (mesh.gridCC[:,2]