import numpy as np from SimPEG.utils import mkvc, sdiag norm = np.linalg.norm class Problem(object): """Problem is the base class for all geophysical forward problems in SimPEG""" def __init__(self, mesh): self.mesh = mesh pass def residual(self, m): pass def modelTransform(self, m): """ :param numpy.array m: model :rtype: numpy.array :return: transformed model The modelTransform changes the model into the physical property. A common example of this is to invert for electrical conductivity in log space. In this case, your model will be log(sigma) and to get back to sigma, you can take the exponential: .. math:: m = \log{\sigma} \exp{m} = \exp{\log{\sigma}} = \sigma """ return np.exp(mkvc(m)) def modelTransformDeriv(self, m): """ :param numpy.array m: model :rtype: scipy.csr_matrix :return: derivative of transformed model The modelTransform changes the model into the physical property. The modelTransformDeriv provides the derivative of the modelTransform. If the model transform is: .. math:: m = \log{\sigma} \exp{m} = \exp{\log{\sigma}} = \sigma Then the derivative is: .. math:: \\frac{\partial \exp{m}}{\partial m} = \\text{sdiag}(\exp{m}) """ return sdiag(np.exp(mkvc(m))) def _test_modelTransformDeriv(self): m = np.random.rand(5) return checkDerivative(lambda m : [self.modelTransform(m), self.modelTransformDeriv(m)], m) def misfit(self, field): """ :param numpy.array field: geophysical field of interest :rtype: float :return: data misfit The data misfit using an l_2 norm is: .. math:: \mu_\\text{data} = {1\over 2}\left| \mathbf{W} (\mathbf{Pu} - d_\\text{obs}) \\right|_2^2 Where P is a projection matrix that brings the field on the full domain to the data measurement locations; u is the field of interest; d_obs is the observed data; and W is the weighting matrix. """ R = self.W*(self.P*field - self.dobs) return 0.5*mkvc(R).inner(mkvc(R)) def misfitDeriv(self, field): """ TODO: Change this documentation. :param numpy.array field: geophysical field of interest :rtype: float :return: data misfit derivative The data misfit using an l_2 norm is: .. math:: \mu_\\text{data} = {1\over 2}\left| \mathbf{W} (\mathbf{Pu} - d_\\text{obs}) \\right|_2^2 Where P is a projection matrix that brings the field on the full domain to the data measurement locations; u is the field of interest; d_obs is the observed data; and W is the weighting matrix. """ R = self.W*(self.P*field - self.dobs) # TODO: make in terms of the field and call Jt, e.g. if looping over RHSs using i: self.Jt(field[:,i],self.W[:,i]*R[:,i]) return mkvc(R) def J(self, u): pass def Jt(self, v): pass if __name__ == '__main__': from SimPEG.inverse import checkDerivative p = Problem(None) m = np.random.rand(5) checkDerivative(lambda m : [p.modelTransform(m), p.modelTransformDeriv(m)], m)