from SimPEG.EM.Utils import omega from SimPEG import mkvc from scipy.constants import mu_0 from SimPEG.MT.BaseMT import BaseMTProblem from SimPEG.MT.SurveyMT import Survey, Data from SimPEG.MT.FieldsMT import Fields1D_e from SimPEG.MT.Utils.MT1Danalytic import getEHfields import numpy as np import multiprocessing, sys, time class eForm_psField(BaseMTProblem): """ A MT problem soving a e formulation and primary/secondary fields decomposion. By eliminating the magnetic flux density using .. math :: \mathbf{b} = \\frac{1}{i \omega}\\left(-\mathbf{C} \mathbf{e} \\right) we can write Maxwell's equations as a second order system in \\\(\\\mathbf{e}\\\) only: .. math :: \\left(\mathbf{C}^T \mathbf{M^e_{\mu^{-1}}} \mathbf{C} + i \omega \mathbf{M^f_\sigma}] \mathbf{e}_{s} =& i \omega \mathbf{M^f_{\delta \sigma}} \mathbf{e}_{p} which we solve for \\\(\\\mathbf{e_s}\\\). The total field \\\mathbf{e}\\ = \\\mathbf{e_p}\\ + \\\mathbf{e_s}\\. The primary field is estimated from a background model (commonly half space ). """ # From FDEMproblem: Used to project the fields. Currently not used for MTproblem. _fieldType = 'e_1d' _eqLocs = 'EF' _sigmaPrimary = None def __init__(self, mesh, **kwargs): BaseMTProblem.__init__(self, mesh, **kwargs) self.fieldsPair = Fields1D_e # self._sigmaPrimary = sigmaPrimary @property def MeMui(self): """ Edge inner product matrix """ if getattr(self, '_MeMui', None) is None: self._MeMui = self.mesh.getEdgeInnerProduct(1.0/mu_0) return self._MeMui @property def MfSigma(self): """ Edge inner product matrix """ if getattr(self, '_MfSigma', None) is None: self._MfSigma = self.mesh.getFaceInnerProduct(self.curModel.sigma) return self._MfSigma @property def sigmaPrimary(self): """ A background model, use for the calculation of the primary fields. """ return self._sigmaPrimary @sigmaPrimary.setter def sigmaPrimary(self, val): # Note: TODO add logic for val, make sure it is the correct size. self._sigmaPrimary = val def getA(self, freq): """ Function to get the A matrix. :param float freq: Frequency :rtype: scipy.sparse.csr_matrix :return: A """ # Note: need to use the code above since in the 1D problem I want # e to live on Faces(nodes) and h on edges(cells). Might need to rethink this # Possible that _fieldType and _eqLocs can fix this MeMui = self.MeMui MfSigma = self.MfSigma C = self.mesh.nodalGrad # Make A A = C.T*MeMui*C + 1j*omega(freq)*MfSigma # Either return full or only the inner part of A return A def getADeriv_m(self, freq, u, v, adjoint=False): """ The derivative of A wrt sigma """ dsig_dm = self.curModel.sigmaDeriv MeMui = self.MeMui # u_src = u['e_1dSolution'] dMfSigma_dm = self.mesh.getFaceInnerProductDeriv(self.curModel.sigma)(u_src) * self.curModel.sigmaDeriv if adjoint: return 1j * omega(freq) * ( dMfSigma_dm.T * v ) # Note: output has to be nN/nF, not nC/nE. # v should be nC return 1j * omega(freq) * ( dMfSigma_dm * v ) def getRHS(self, freq): """ Function to return the right hand side for the system. :param float freq: Frequency :rtype: numpy.ndarray (nF, 1), numpy.ndarray (nF, 1) :return: RHS for 1 polarizations, primary fields """ # Get sources for the frequncy(polarizations) Src = self.survey.getSrcByFreq(freq)[0] S_e = Src.S_e(self) return -1j * omega(freq) * S_e def getRHSDeriv_m(self, freq, v, adjoint=False): """ The derivative of the RHS wrt sigma """ Src = self.survey.getSrcByFreq(freq)[0] S_eDeriv = Src.S_eDeriv_m(self, v, adjoint) return -1j * omega(freq) * S_eDeriv def fields(self, m): ''' Function to calculate all the fields for the model m. :param np.ndarray (nC,) m: Conductivity model ''' # Set the current model self.curModel = m F = Fields1D_e(self.mesh, self.survey) for freq in self.survey.freqs: if self.verbose: startTime = time.time() print 'Starting work for {:.3e}'.format(freq) sys.stdout.flush() A = self.getA(freq) rhs = self.getRHS(freq) Ainv = self.Solver(A, **self.solverOpts) e_s = Ainv * rhs # Store the fields Src = self.survey.getSrcByFreq(freq)[0] # NOTE: only store the e_solution(secondary), all other components calculated in the fields object F[Src, 'e_1dSolution'] = e_s[:,-1] # Only storing the yx polarization as 1d # Note curl e = -iwb so b = -curl e /iw # b = -( self.mesh.nodalGrad * e )/( 1j*omega(freq) ) # F[Src, 'b_1d'] = b[:,1] if self.verbose: print 'Ran for {:f} seconds'.format(time.time()-startTime) sys.stdout.flush() return F # Note this is not fully functional. # Missing: # Fields class corresponding to the fields # Update Jvec and Jtvec to include all the derivatives components # Other things ... class eForm_TotalField(BaseMTProblem): """ A MT problem solving a e formulation and a Total bondary domain decompostion. Solves the equation: Math: """ # From FDEMproblem: Used to project the fields. Currently not used for MTproblem. _fieldType = 'e' _eqLocs = 'EF' def __init__(self, mesh, **kwargs): BaseMTProblem.__init__(self, mesh, **kwargs) @property def MeMui(self): """ Edge inner product matrix """ if getattr(self, '_MeMui', None) is None: self._MeMui = self.mesh.getEdgeInnerProduct(1.0/mu_0) return self._MeMui @property def MfSigma(self): """ Edge inner product matrix """ if getattr(self, '_MfSigma', None) is None: self._MfSigma = self.mesh.getFaceInnerProduct(self.curModel.sigma) return self._MfSigma def getA(self, freq, full=False): """ Function to get the A matrix. :param float freq: Frequency :param logic full: Return full A or the inner part :rtype: scipy.sparse.csr_matrix :return: A """ MeMui = self.MeMui MfSigma = self.MfSigma # Note: need to use the code above since in the 1D problem I want # e to live on Faces(nodes) and h on edges(cells). Might need to rethink this # Possible that _fieldType and _eqLocs can fix this # MeMui = self.MfMui # MfSigma = self.MfSigma C = self.mesh.nodalGrad # Make A A = C.T*MeMui*C + 1j*omega(freq)*MfSigma # Either return full or only the inner part of A if full: return A else: return A[1:-1,1:-1] def getADeriv_m(self, freq, u, v, adjoint=False): raise NotImplementedError('getADeriv is not implemented') def getRHS(self, freq): """ Function to return the right hand side for the system. :param float freq: Frequency :rtype: numpy.ndarray (nE, 2), numpy.ndarray (nE, 2) :return: RHS for both polarizations, primary fields """ # Get sources for the frequency # NOTE: Need to use the source information, doesn't really apply in 1D src = self.survey.getSrcByFreq(freq) # Get the full A A = self.getA(freq,full=True) # Define the outer part of the solution matrix Aio = A[1:-1,[0,-1]] Ed, Eu, Hd, Hu = getEHfields(self.mesh,self.curModel.sigma,freq,self.mesh.vectorNx) Etot = (Ed + Eu) sourceAmp = 1.0 Etot = ((Etot/Etot[-1])*sourceAmp) # Scale the fields to be equal to sourceAmp at the top ## Note: The analytic solution is derived with e^iwt eBC = np.r_[Etot[0],Etot[-1]] # The right hand side return -Aio*eBC, eBC def getRHSderiv_m(self, freq, backSigma, u, v, adjoint=False): raise NotImplementedError('getRHSDeriv not implemented yet') return None def fields(self, m): ''' Function to calculate all the fields for the model m. :param np.ndarray (nC,) m: Conductivity model :param np.ndarray (nC,) m_back: Background conductivity model ''' self.curModel = m # RHS, CalcFields = self.getRHS(freq,m_back), self.calcFields F = Fields1D_e(self.mesh, self.survey) for freq in self.survey.freqs: if self.verbose: startTime = time.time() print 'Starting work for {:.3e}'.format(freq) sys.stdout.flush() A = self.getA(freq) rhs, e_o = self.getRHS(freq) Ainv = self.Solver(A, **self.solverOpts) e_i = Ainv * rhs e = mkvc(np.r_[e_o[0], e_i, e_o[1]],2) # Store the fields Src = self.survey.getSrcByFreq(freq) # NOTE: only store e fields F[Src, 'e_1dSolution'] = e[:,0] if self.verbose: print 'Ran for {:f} seconds'.format(time.time()-startTime) sys.stdout.flush() return F