Files
simpeg/SimPEG/EM/TDEM/TDEM_b.py
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2016-05-29 22:18:22 -07:00

357 lines
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Python

from BaseTDEM import BaseTDEMProblem, FieldsTDEM
from SimPEG.Utils import mkvc, sdiag
import numpy as np
from SurveyTDEM import SurveyTDEM
class FieldsTDEM_e_from_b(FieldsTDEM):
"""Fancy Field Storage for a TDEM survey."""
knownFields = {'b': 'F'}
aliasFields = {'e': ['b','E','e_from_b']}
def startup(self):
self.MeSigmaI = self.survey.prob.MeSigmaI
self.edgeCurlT = self.survey.prob.mesh.edgeCurl.T
self.MfMui = self.survey.prob.MfMui
def e_from_b(self, b, srcInd, timeInd):
# TODO: implement non-zero js
return self.MeSigmaI*(self.edgeCurlT*(self.MfMui*b))
class FieldsTDEM_e_from_b_Ah(FieldsTDEM):
"""Fancy Field Storage for a TDEM survey.
This is used when solving Ahat and AhatT
"""
knownFields = {'b': 'F'}
aliasFields = {'e': ['b','E','e_from_b']}
p = None
def startup(self):
self.MeSigmaI = self.survey.prob.MeSigmaI
self.edgeCurlT = self.survey.prob.mesh.edgeCurl.T
self.MfMui = self.survey.prob.MfMui
def e_from_b(self, y_b, srcInd, tInd):
y_e = self.MeSigmaI*(self.edgeCurlT*(self.MfMui*y_b))
if 'e' in self.p:
y_e = y_e - self.MeSigmaI*self.p[srcInd,'e',tInd]
return y_e
class ProblemTDEM_b(BaseTDEMProblem):
"""
Time-Domain EM problem - B-formulation
TDEM_b treats the following discretization of Maxwell's equations
.. math::
\dcurl \e^{(t+1)} + \\frac{\\b^{(t+1)} - \\b^{(t)}}{\delta t} = 0 \\\\
\dcurl^\\top \MfMui \\b^{(t+1)} - \MeSig \e^{(t+1)} = \Me \j_s^{(t+1)}
with \\\(\\b\\\) defined on cell faces and \\\(\e\\\) defined on edges.
"""
def __init__(self, mesh, mapping=None, **kwargs):
BaseTDEMProblem.__init__(self, mesh, mapping=mapping, **kwargs)
solType = 'b' #: Type of the solution, in this case the 'b' field
surveyPair = SurveyTDEM
_FieldsForward_pair = FieldsTDEM_e_from_b #: used for the forward calculation only
####################################################
# Internal Methods
####################################################
def getA(self, tInd):
"""
:param int tInd: Time index
:rtype: scipy.sparse.csr_matrix
:return: A
"""
dt = self.timeSteps[tInd]
return self.MfMui*self.mesh.edgeCurl*self.MeSigmaI*self.mesh.edgeCurl.T*self.MfMui + (1.0/dt)*self.MfMui
def getRHS(self, tInd, F):
dt = self.timeSteps[tInd]
B_n = np.c_[[F[src,'b',tInd] for src in self.survey.srcList]].T
if B_n.shape[0] is not 1:
raise NotImplementedError('getRHS not implemented for this shape of B_n')
RHS = (1.0/dt)*self.MfMui*B_n[0,:,:] #TODO: This is a hack
return RHS
####################################################
# Derivatives
####################################################
def Gvec(self, m, vec, u=None):
"""
:param numpy.array m: Conductivity model
:param numpy.array vec: vector (like a model)
:param FieldsTDEM u: Fields resulting from m
:rtype: FieldsTDEM
:return: f
Multiply G by a vector
"""
if u is None:
u = self.fields(m)
self.curModel = m
# Note: Fields has shape (nF/E, nSrc, nT+1)
# However, p will only really fill (:,:,1:nT+1)
# meaning the 'initial fields' are zero (:,:,0)
p = FieldsTDEM(self.mesh, self.survey)
# 'b' at all times is zero.
# However, to save memory we will **not** do:
#
# p[:, 'b', :] = 0.0
# fake initial 'e' fields
p[:, 'e', 0] = 0.0
dMdsig = self.MeSigmaDeriv
# self.mesh.getEdgeInnerProductDeriv(self.curModel.transform)
# dsigdm_x_v = self.curModel.sigmaDeriv*vec
# dsigdm_x_v = self.curModel.transformDeriv*vec
for i in range(1,self.nT+1):
# TODO: G[1] may be dependent on the model
# for a galvanic source (deriv of the dc problem)
#
# Do multiplication for all src in self.survey.srcList
for src in self.survey.srcList:
p[src, 'e', i] = - dMdsig(u[src,'e',i]) * vec
return p
def Gtvec(self, m, vec, u=None):
"""
:param numpy.array m: Conductivity model
:param numpy.array vec: vector (like a fields)
:param FieldsTDEM u: Fields resulting from m
:rtype: numpy.ndarray
:return: p (like a model)
Multiply G.T by a vector
"""
if u is None:
u = self.fields(m)
self.curModel = m
# dMdsig = self.mesh.getEdgeInnerProductDeriv(self.curModel.transform)
# dsigdm = self.curModel.transformDeriv
MeSigmaDeriv = self.MeSigmaDeriv
nSrc = self.survey.nSrc
VUs = None
# Here we can do internal multiplications of Gt*v and then multiply by MsigDeriv.T in one go.
for i in range(1,self.nT+1):
vu = None
for src in self.survey.srcList:
vusrc = MeSigmaDeriv(u[src,'e',i]).T * vec[src,'e',i]
vu = vusrc if vu is None else vu + vusrc
VUs = vu if VUs is None else VUs + vu
# p = -dsigdm.T*VUs
return -VUs
def solveAh(self, m, p):
"""
:param numpy.array m: Conductivity model
:param FieldsTDEM p: Fields object
:rtype: FieldsTDEM
:return: y
Solve the block-matrix system \\\(\\\hat{A} \\\hat{y} = \\\hat{p}\\\):
.. math::
\mathbf{\hat{A}} = \left[
\\begin{array}{cccc}
A & 0 & & \\\\
B & A & & \\\\
& \ddots & \ddots & \\\\
& & B & A
\end{array}
\\right] \\\\
\mathbf{A} =
\left[
\\begin{array}{cc}
\\frac{1}{\delta t} \MfMui & \MfMui\dcurl \\\\
\dcurl^\\top \MfMui & -\MeSig
\end{array}
\\right] \\\\
\mathbf{B} =
\left[
\\begin{array}{cc}
-\\frac{1}{\delta t} \MfMui & 0 \\\\
0 & 0
\end{array}
\\right] \\\\
"""
def AhRHS(tInd, y):
rhs = self.MfMui*(self.mesh.edgeCurl*(self.MeSigmaI*p[:,'e',tInd+1]))
if 'b' in p:
rhs = rhs + p[:,'b',tInd+1]
if tInd == 0:
return rhs
dt = self.timeSteps[tInd]
return rhs + 1.0/dt*self.MfMui*y[:,'b',tInd]
F = FieldsTDEM_e_from_b_Ah(self.mesh, self.survey, p=p)
return self.forward(m, AhRHS, F)
def solveAht(self, m, p):
"""
:param numpy.array m: Conductivity model
:param FieldsTDEM p: Fields object
:rtype: FieldsTDEM
:return: y
Solve the block-matrix system \\\(\\\hat{A}^\\\\top \\\hat{y} = \\\hat{p}\\\):
.. math::
\mathbf{\hat{A}}^\\top = \left[
\\begin{array}{cccc}
A & B & & \\\\
& \ddots & \ddots & \\\\
& & A & B \\\\
& & 0 & A
\end{array}
\\right] \\\\
\mathbf{A} =
\left[
\\begin{array}{cc}
\\frac{1}{\delta t} \MfMui & \MfMui\dcurl \\\\
\dcurl^\\top \MfMui & -\MeSig
\end{array}
\\right] \\\\
\mathbf{B} =
\left[
\\begin{array}{cc}
-\\frac{1}{\delta t} \MfMui & 0 \\\\
0 & 0
\end{array}
\\right] \\\\
"""
# Mini Example:
#
# nT = 3, len(times) == 4, fields stored in F[:,:,1:4]
#
# 0 is held for initial conditions (this shifts the storage by +1)
# ^
# fLoc 0 1 2 3
# |-----|-----|-----|
# tInd 0 1 2
# / ___/
# 2 (tInd=2 uses fields 3 and would use 4 but it doesn't exist)
# / ___/
# 1 (tInd=1 uses fields 2 and 3)
def AhtRHS(tInd, y):
nSrc, nF = self.survey.nSrc, self.mesh.nF
rhs = np.zeros((nF,1) if nSrc == 1 else (nF, nSrc))
if 'e' in p:
rhs += self.MfMui*(self.mesh.edgeCurl*(self.MeSigmaI*p[:,'e',tInd+1]))
if 'b' in p:
rhs += p[:,'b',tInd+1]
if tInd == self.nT-1:
return rhs
dt = self.timeSteps[tInd+1]
return rhs + 1.0/dt*self.MfMui*y[:,'b',tInd+2]
F = FieldsTDEM_e_from_b_Ah(self.mesh, self.survey, p=p)
return self.adjoint(m, AhtRHS, F)
####################################################
# Functions for tests
####################################################
def _AhVec(self, m, vec):
"""
:param numpy.array m: Conductivity model
:param FieldsTDEM vec: Fields object
:rtype: FieldsTDEM
:return: f
Multiply the matrix \\\(\\\hat{A}\\\) by a fields vector where
.. math::
\mathbf{\hat{A}} = \left[
\\begin{array}{cccc}
A & 0 & & \\\\
B & A & & \\\\
& \ddots & \ddots & \\\\
& & B & A
\end{array}
\\right] \\\\
\mathbf{A} =
\left[
\\begin{array}{cc}
\\frac{1}{\delta t} \MfMui & \MfMui\dcurl \\\\
\dcurl^\\top \MfMui & -\MeSig
\end{array}
\\right] \\\\
\mathbf{B} =
\left[
\\begin{array}{cc}
-\\frac{1}{\delta t} \MfMui & 0 \\\\
0 & 0
\end{array}
\\right] \\\\
"""
self.curModel = m
f = FieldsTDEM(self.mesh, self.survey)
for i in range(1,self.nT+1):
dt = self.timeSteps[i-1]
b = 1.0/dt*self.MfMui*vec[:,'b',i] + self.MfMui*(self.mesh.edgeCurl*vec[:,'e',i])
if i > 1:
b = b - 1.0/dt*self.MfMui*vec[:,'b',i-1]
f[:,'b',i] = b
f[:,'e',i] = self.mesh.edgeCurl.T*(self.MfMui*vec[:,'b',i]) - self.MeSigma*vec[:,'e',i]
return f
def _AhtVec(self, m, vec):
"""
:param numpy.array m: Conductivity model
:param FieldsTDEM vec: Fields object
:rtype: FieldsTDEM
:return: f
Multiply the matrix \\\(\\\hat{A}\\\) by a fields vector where
.. math::
\mathbf{\hat{A}}^\\top = \left[
\\begin{array}{cccc}
A & B & & \\\\
& \ddots & \ddots & \\\\
& & A & B \\\\
& & 0 & A
\end{array}
\\right] \\\\
\mathbf{A} =
\left[
\\begin{array}{cc}
\\frac{1}{\delta t} \MfMui & \MfMui\dcurl \\\\
\dcurl^\\top \MfMui & -\MeSig
\end{array}
\\right] \\\\
\mathbf{B} =
\left[
\\begin{array}{cc}
-\\frac{1}{\delta t} \MfMui & 0 \\\\
0 & 0
\end{array}
\\right] \\\\
"""
self.curModel = m
f = FieldsTDEM(self.mesh, self.survey)
for i in range(self.nT):
b = 1.0/self.timeSteps[i]*self.MfMui*vec[:,'b',i+1] + self.MfMui*(self.mesh.edgeCurl*vec[:,'e',i+1])
if i < self.nT-1:
b = b - 1.0/self.timeSteps[i+1]*self.MfMui*vec[:,'b',i+2]
f[:,'b', i+1] = b
f[:,'e', i+1] = self.mesh.edgeCurl.T*(self.MfMui*vec[:,'b',i+1]) - self.MeSigma*vec[:,'e',i+1]
return f