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@@ -9,7 +9,9 @@ We encourage the use of this data for radiomics and machine learning investigati
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## Files
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The files are in compressed NIFTI (.nii.gz) format and collected in separate folders for T2 and ADC images. Each filename contains the following information (separated by underscores):
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### Lesion masks
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The files are in compressed NIFTI (.nii.gz) format and collected in separate folders for T2 and ADC images (n = 299 lesions). Each filename contains the following information (separated by underscores):
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- "PROSTATEx Patient ID" + "Finding ID" + "Sequence name" + "ROI"
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@@ -21,6 +23,22 @@ The sequence number corresponds to the number at the beginning of the PROSTATEx
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Full exam DICOM files are retrievable through the Cancer Imaging Archive at: [https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges](https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges)
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### Prostate and zonal anatomy masks
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The files are in compressed NIFTI (.nii.gz) format, and all segmentations have been performed on axial T2 images (n = 204 exams). Each filename contains the following information (separated by underscores):
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- "PROSTATEx Patient ID"
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The masks included in the "mask_prostate" directory represent whole-gland masks (binarized). Those included in "mask_pz" and "mask_tz" are limited respectively to the peripheral and rest (transition zone, central zone, anterior stroma) of the gland, also binarized. The last directory "mas_pz_tz" contains both annotations, with peripheral zone voxels having a value of 2 and the remaining (transition zone, central zone, anterior stroma) a value of 1. The backgorund always has a value of 0.
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As sometimes multiple axial T2 image sequences are available for a patient, the repository also includes a list in CSV format containing the correct images for each mask. The list is structured as follows (separated by underscores):
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- "PROSTATEx Patient ID" + "Sequence name" + "Sequence number"
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The sequence number corresponds to the number at the beginning of the PROSTATEx dataset DICOM image folders for each patient.
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Full exam DICOM files are retrievable through the Cancer Imaging Archive at: [https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges](https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges)
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## License
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Creative Commons Attribution 4.0 International (CC-BY-4.0). See "LICENSE" file for full details.
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