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Author SHA1 Message Date
Renato Cuocolo 35d95646bf Update README.md 2020-09-08 15:37:01 +02:00
Renato Cuocolo 2b7a1ddbe7 Update README.md
Updated description to include both lesion and prostate masks.
2020-09-08 15:34:42 +02:00
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@@ -9,7 +9,9 @@ We encourage the use of this data for radiomics and machine learning investigati
## Files
The files are in compressed NIFTI (.nii.gz) format and collected in separate folders for T2 and ADC images. Each filename contains the following information (separated by underscores):
### Lesion masks
The files are in compressed NIFTI (.nii.gz) format and collected in separate folders for T2 and ADC images (n = 299 lesions). Each filename contains the following information (separated by underscores):
- "PROSTATEx Patient ID" + "Finding ID" + "Sequence name" + "ROI"
@@ -21,6 +23,22 @@ The sequence number corresponds to the number at the beginning of the PROSTATEx
Full exam DICOM files are retrievable through the Cancer Imaging Archive at: [https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges](https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges)
### Prostate and zonal anatomy masks
The files are in compressed NIFTI (.nii.gz) format, and all segmentations have been performed on axial T2 images (n = 204 exams). Each filename contains the following information (separated by underscores):
- "PROSTATEx Patient ID"
The masks included in the "mask_prostate" directory represent whole-gland masks (binarized). Those included in "mask_pz" and "mask_tz" are limited respectively to the peripheral and rest (transition zone, central zone, anterior stroma) of the gland, also binarized. The last directory "mas_pz_tz" contains both annotations, with peripheral zone voxels having a value of 2 and the remaining (transition zone, central zone, anterior stroma) a value of 1. The backgorund always has a value of 0.
As sometimes multiple axial T2 image sequences are available for a patient, the repository also includes a list in CSV format containing the correct images for each mask. The list is structured as follows (separated by underscores):
- "PROSTATEx Patient ID" + "Sequence name" + "Sequence number"
The sequence number corresponds to the number at the beginning of the PROSTATEx dataset DICOM image folders for each patient.
Full exam DICOM files are retrievable through the Cancer Imaging Archive at: [https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges](https://wiki.cancerimagingarchive.net/display/Public/SPIE-AAPM-NCI+PROSTATEx+Challenges)
## License
Creative Commons Attribution 4.0 International (CC-BY-4.0). See "LICENSE" file for full details.