Added support for symbolic expressions in axes. Closes #9.

This commit is contained in:
Patrick Kidger
2022-08-01 01:00:18 +01:00
parent 6ff4620d1a
commit 07259aa5c8
4 changed files with 137 additions and 26 deletions
+3 -1
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@@ -9,8 +9,9 @@ Each array is denoted by a type `dtype[shape]`, such as `f32["batch channels"]`.
The shape should be a string of space-separated symbols, such as "a b c d". Each symbol can be either an:
- `int`: fixed-size axis, e.g. `f32["28 28"]`.
- `str`: variable-size axis, e.g. `f32["channels"]`.
- A symbolic expression (without spaces!) in terms of other variable-size axes, e.g. `def remove_last(x: f32["dim"]) -> f32["dim-1"]`.
When calling a function, variable-size axes will be matched up across all arguments and checked for consistency. (See [runtime type checking](#runtime-type-checking) below.)
When calling a function, variable-size axes and symbolic axes will be matched up across all arguments and checked for consistency. (See [runtime type checking](#runtime-type-checking) below.)
In addition some modifiers can be applied:
- Prepend `*` to a dimension to indicate that it can match multiple axes, e.g. `f32["*batch c h w"]` will match zero or more batch axes.
@@ -27,6 +28,7 @@ Some notes:
- To denote an arbitrary shape (and only check dtype) use `"..."`, e.g. `f32["..."]`.
- You cannot have more than one use of multiple-axes, i.e. you can only use `...` or `*name` at most once in each array.
- An example of broadcasting multiple dimensions: `add(x: f32["*#foo"], y: f32["*#foo"]) -> f32["*#foo"]`.
- A symbolic expression cannot be evaluated unless all of the axes sizes it refers to have already been processed. In practice this usually means that they should only be used in annotations for the return type, and only use axes declared in the arguments.
### Dtype
+84 -22
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@@ -17,6 +17,7 @@
# IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
# CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
import enum
import functools as ft
from typing import Any, Dict, List, NoReturn, Optional, Tuple, Union
from typing_extensions import Literal
@@ -41,10 +42,17 @@ def set_array_name_format(value):
_any_dtype = object()
_anonymous_dim = object()
_anonymous_variadic_dim = object()
class _DimType(enum.Enum):
named = enum.auto()
fixed = enum.auto()
symbolic = enum.auto()
class _NamedDim:
def __init__(self, name, broadcastable):
self.name = name
@@ -63,21 +71,28 @@ class _FixedDim:
self.broadcastable = broadcastable
class _SymbolicDim:
def __init__(self, expr, broadcastable):
self.expr = expr
self.broadcastable = broadcastable
_AbstractDimOrVariadicDim = Union[
Literal[_anonymous_dim],
Literal[_anonymous_variadic_dim],
_NamedDim,
_NamedVariadicDim,
_FixedDim,
_SymbolicDim,
]
_AbstractDim = Union[Literal[_anonymous_dim], _NamedDim, _FixedDim]
_AbstractDim = Union[Literal[_anonymous_dim], _NamedDim, _FixedDim, _SymbolicDim]
def _check_dims(
cls_dims: List[_AbstractDim],
obj_shape: Tuple[int],
memo: Dict[str, Union[int, Tuple[int]]],
):
single_memo: Dict[str, int],
) -> bool:
assert len(cls_dims) == len(obj_shape)
for cls_dim, obj_size in zip(cls_dims, obj_shape):
if cls_dim is _anonymous_dim:
@@ -87,12 +102,24 @@ def _check_dims(
elif type(cls_dim) is _FixedDim:
if cls_dim.size != obj_size:
return False
elif type(cls_dim) is _SymbolicDim:
try:
eval_size = eval(cls_dim.expr, single_memo)
except NameError as e:
raise NameError(
f"Cannot process symbolic dimension '{cls_dim.expr}' as some "
"dimension names have not been processed. In practice you should "
"usually only use symbolic dimensions in annotations for return "
"types, referring only to dimensions annotated for arguments."
) from e
if eval_size != obj_size:
return False
else:
assert type(cls_dim) is _NamedDim
try:
cls_size = memo[cls_dim.name]
cls_size = single_memo[cls_dim.name]
except KeyError:
memo[cls_dim.name] = obj_size
single_memo[cls_dim.name] = obj_size
else:
if cls_size != obj_size:
return False
@@ -111,26 +138,41 @@ class _MetaAbstractArray(type):
# `isinstance` happening outside any @jaxtyped decorators, e.g. at the
# global scope. In this case just create a temporary memo, since we're not
# going to be comparing against any stored values anyway.
memo = {}
single_memo = {}
variadic_memo = {}
variadic_broadcast_memo = {}
temp_memo = True
else:
single_memo, variadic_memo, variadic_broadcast_memo = storage.memo_stack[-1]
# Make a copy so we don't mutate the original memo during the shape check.
memo = storage.memo_stack[-1].copy()
single_memo = single_memo.copy()
variadic_memo = variadic_memo.copy()
variadic_broadcast_memo = variadic_broadcast_memo.copy()
temp_memo = False
if cls._check_shape(obj, memo):
if cls._check_shape(obj, single_memo, variadic_memo, variadic_broadcast_memo):
# We update the memo every time we successfully pass a shape check
if not temp_memo:
storage.memo_stack[-1] = memo
storage.memo_stack[-1] = (
single_memo,
variadic_memo,
variadic_broadcast_memo,
)
return True
else:
return False
def _check_shape(cls, obj, memo):
def _check_shape(
cls,
obj,
single_memo: Dict[str, int],
variadic_memo: Dict[str, Tuple[int, ...]],
variadic_broadcast_memo: Dict[str, List[Tuple[int, ...]]],
):
if cls.index_variadic is None:
if obj.ndim != len(cls.dims):
return False
return _check_dims(cls.dims, obj.shape, memo)
return _check_dims(cls.dims, obj.shape, single_memo)
else:
if obj.ndim < len(cls.dims) - 1:
return False
@@ -138,25 +180,28 @@ class _MetaAbstractArray(type):
j = -(len(cls.dims) - i - 1)
if j == 0:
j = None
if not _check_dims(cls.dims[:i], obj.shape[:i], memo):
if not _check_dims(cls.dims[:i], obj.shape[:i], single_memo):
return False
if j is not None and not _check_dims(cls.dims[j:], obj.shape[j:], memo):
if j is not None and not _check_dims(
cls.dims[j:], obj.shape[j:], single_memo
):
return False
variadic_dim = cls.dims[i]
if variadic_dim is _anonymous_variadic_dim:
return True
else:
assert type(variadic_dim) is _NamedVariadicDim
variadic_name = variadic_dim.name
try:
if variadic_dim.broadcastable:
variadic_shapes = memo[variadic_name]
variadic_shapes = variadic_broadcast_memo[variadic_name]
else:
variadic_shape = memo[variadic_name]
variadic_shape = variadic_memo[variadic_name]
except KeyError:
if variadic_dim.broadcastable:
memo[variadic_name] = [obj.shape[i:j]]
variadic_broadcast_memo[variadic_name] = [obj.shape[i:j]]
else:
memo[variadic_name] = obj.shape[i:j]
variadic_memo[variadic_name] = obj.shape[i:j]
return True
else:
if variadic_dim.broadcastable:
@@ -217,7 +262,7 @@ class _MetaAbstractDtype(type):
broadcastable = False
variadic = True
anonymous = True
is_fixed = False
dim_type = _DimType.named
else:
broadcastable = False
variadic = False
@@ -256,9 +301,12 @@ class _MetaAbstractDtype(type):
try:
elem = int(elem)
except ValueError:
is_fixed = False
if len(elem) == 0 or elem.isidentifier():
dim_type = _DimType.named
else:
dim_type = _DimType.symbolic
else:
is_fixed = True
dim_type = _DimType.fixed
if variadic:
if index_variadic is not None:
@@ -268,7 +316,7 @@ class _MetaAbstractDtype(type):
)
index_variadic = index
if is_fixed:
if dim_type is _DimType.fixed:
if variadic:
raise ValueError(
"Cannot have a fixed axis bind to multiple dimensions, e.g. "
@@ -280,7 +328,7 @@ class _MetaAbstractDtype(type):
"allowed"
)
elem = _FixedDim(elem, broadcastable)
else:
elif dim_type is _DimType.named:
if anonymous:
if broadcastable:
raise ValueError(
@@ -296,6 +344,20 @@ class _MetaAbstractDtype(type):
elem = _NamedVariadicDim(elem, broadcastable)
else:
elem = _NamedDim(elem, broadcastable)
else:
assert dim_type is _DimType.symbolic
if anonymous:
raise ValueError(
"Cannot have a symbolic dimension be anonymous, e.g. "
"`_foo+bar` is not allowed"
)
if variadic:
raise ValueError(
"Cannot have symbolic multiple-dimensions, e.g. "
"`*foo+bar` is not allowed"
)
elem = compile(elem, "<string>", "eval")
elem = _SymbolicDim(elem, broadcastable)
dims.append(elem)
if _array_name_format == "dtype_and_shape":
name = f"{cls.__name__}['{dim_str}']"
+1 -2
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@@ -28,8 +28,7 @@ storage.memo_stack = []
def jaxtyped(fn):
@ft.wraps(fn)
def wrapper(*args, **kwargs):
memo = {}
storage.memo_stack.append(memo)
storage.memo_stack.append(({}, {}, {}))
try:
return fn(*args, **kwargs)
finally:
+49 -1
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@@ -320,6 +320,54 @@ def test_broadcast_variadic_named(typecheck, getkey):
g(o, a)
def test_no_commas(typecheck, getkey):
def test_no_commas():
with pytest.raises(ValueError):
f32["foo, bar"]
def test_symbolic(typecheck, getkey):
@jaxtyped
@typecheck
def make_slice(x: f32[" dim"]) -> f32[" dim-1"]:
return x[1:]
@jaxtyped
@typecheck
def cat(x: f32[" dim"]) -> f32[" 2*dim"]:
return jnp.concatenate([x, x])
@jaxtyped
@typecheck
def bad_make_slice(x: f32[" dim"]) -> f32[" dim-1"]:
return x
@jaxtyped
@typecheck
def bad_cat(x: f32[" dim"]) -> f32[" 2*dim"]:
return jnp.concatenate([x, x, x])
x = jr.normal(getkey(), (5,))
assert make_slice(x).shape == (4,)
assert cat(x).shape == (10,)
y = jr.normal(getkey(), (3, 4))
with pytest.raises(ParamError):
make_slice(y)
with pytest.raises(ParamError):
cat(y)
with pytest.raises(ReturnError):
bad_make_slice(x)
with pytest.raises(ReturnError):
bad_cat(x)
def test_incomplete_symbolic(typecheck, getkey):
@jaxtyped
@typecheck
def foo(x: f32[" 2*dim"]):
pass
x = jr.normal(getkey(), (4,))
with pytest.raises(NameError):
foo(x)