Added jaxtyping.Array=jnp.ndarray

This commit is contained in:
Patrick Kidger
2022-08-30 12:56:47 -07:00
parent 903000f3d5
commit 48e8131247
4 changed files with 27 additions and 29 deletions
+16 -23
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@@ -2,20 +2,20 @@
## Annotating array types
Each array is denoted by a type `dtype[array, shape]`, such as `Float[jnp.ndarray, "batch channels"]`.
Each array is denoted by a type `dtype[array, shape]`, such as `Float[Array, "batch channels"]`.
### Shape
The shape should be a string of space-separated symbols, such as "a b c d". Each symbol can be either an:
- `int`: fixed-size axis, e.g. `"28 28"`.
- `str`: variable-size axis, e.g. `"channels"`.
- A symbolic expression (without spaces!) in terms of other variable-size axes, e.g. `def remove_last(x: Float[jnp.ndarray, "dim"]) -> Float[jnp.ndarray, "dim-1"]`.
- A symbolic expression (without spaces!) in terms of other variable-size axes, e.g. `def remove_last(x: Float[Array, "dim"]) -> Float[Array, "dim-1"]`.
When calling a function, variable-size axes and symbolic axes will be matched up across all arguments and checked for consistency. (See [runtime type checking](#runtime-type-checking) below.)
In addition some modifiers can be applied:
- Prepend `*` to a dimension to indicate that it can match multiple axes, e.g. `"*batch c h w"` will match zero or more batch axes.
- Prepend `#` to a dimension to indicate that it can be that size *or* equal to one -- i.e. broadcasting is acceptable, e.g. `add(x: Float[jnp.ndarray, "#foo"], y: Float[jnp.ndarray, "#foo"]) -> Float[jnp.ndarray, "#foo"]`.
- Prepend `#` to a dimension to indicate that it can be that size *or* equal to one -- i.e. broadcasting is acceptable, e.g. `add(x: Float[Array, "#foo"], y: Float[Array, "#foo"]) -> Float[Array, "#foo"]`.
- Prepend `_` to a dimension to disable any runtime checking of that dimension (so that it can be used just as documentation). This can also be used as just `_` on its own: e.g. `"b c _ _"`.
The order of these modifiers does not matter.
@@ -24,10 +24,10 @@ As a special case:
- `...`: anonymous zero or more axes (equivalent to `*_`) e.g. `"... c h w"`
Some notes:
- To denote a scalar shape use `""`, e.g. `Float[jnp.ndarray, ""]`.
- To denote an arbitrary shape (and only check dtype) use `"..."`, e.g. `Float[jnp.ndarray, "..."]`.
- To denote a scalar shape use `""`, e.g. `Float[Array, ""]`.
- To denote an arbitrary shape (and only check dtype) use `"..."`, e.g. `Float[Array, "..."]`.
- You cannot have more than one use of multiple-axes, i.e. you can only use `...` or `*name` at most once in each array.
- An example of broadcasting multiple dimensions: `add(x: Float[jnp.ndarray, "*#foo"], y: Float[jnp.ndarray, "*#foo"]) -> Float[jnp.ndarray, "*#foo"]`.
- An example of broadcasting multiple dimensions: `add(x: Float[Array, "*#foo"], y: Float[Array, "*#foo"]) -> Float[Array, "*#foo"]`.
- A symbolic expression cannot be evaluated unless all of the axes sizes it refers to have already been processed. In practice this usually means that they should only be used in annotations for the return type, and only use axes declared in the arguments.
### Dtype
@@ -49,26 +49,21 @@ The dtype should be any one of (imported from `jaxtyping`):
Unless you really want to force a particular precision, then for most applications you should probably allow any floating-point, any integer, etc. That is, use
```python
from jaxtyping import Float
Float[jnp.ndarray, "some_shape"]
from jaxtyping import Array, Float
Float[Array, "some_shape"]
```
rather than
```python
from jaxtyping import f32
f32[jnp.ndarray, "some_shape"]
from jaxtyping import Array, f32
f32[Array, "some_shape"]
```
### Array
The array should typically be a `jnp.ndarray`. In practice, to save a bit of space and because it looks quite nice, we recommend:
```python
from jax.numpy import ndarray as Array
Float[Array, "..."]
```
The array should typically be a `jaxtyping.Array`, which is an alias for `jnp.ndarray`.
You can use other types as well. `jaxtyping` has support for JAX, NumPy, TensorFlow, and PyTorch, e.g.:
But you can use other types as well. `jaxtyping` has support for JAX, NumPy, TensorFlow, and PyTorch, e.g.:
```python
Float[jnp.ndarray, "..."]
Float[np.ndarray, "..."]
Float[tf.Tensor, "..."]
Float[torch.Tensor, "..."]
@@ -78,7 +73,7 @@ Float[torch.Tensor, "..."]
### `jaxtyping.PyTree`
Each PyTree is denoted by a type `PyTree[LeafType]`, such as `PyTree[int]` or `PyTree[Union[str, f32[jnp.ndarray, "b c"]]]`.
Each PyTree is denoted by a type `PyTree[LeafType]`, such as `PyTree[int]` or `PyTree[Union[str, f32[Array, "b c"]]]`.
You can leave off the `[...]`, in which case `PyTree` is simply a suggestively-named alternative to `Any`. ([By definition all types are PyTrees.](https://jax.readthedocs.io/en/latest/pytrees.html))
@@ -98,8 +93,7 @@ Example:
```python
# Import both the annotation and the `jaxtyped` decorator from `jaxtyping`
from jaxtyping import f32, jaxtyped
from jax.numpy import ndarray as Array
from jaxtyping import Array, f32, jaxtyped
# Use your favourite typechecker: usually one of the two lines below.
from typeguard import typechecked as typechecker
@@ -179,8 +173,7 @@ install_import_hook("do_stuff", ("typeguard", "typechecked"))
import do_stuff
### do_stuff.py
from jaxtyping import f32
from jax.numpy import ndarray as Array
from jaxtyping import Array, f32
def g(x: f32[Array, "..."]):
...
@@ -224,4 +217,4 @@ Union[u8["shape"], u16["shape"]]
### `jaxtyping.AbstractArray`
The base class of all shape-and-dtype-specified arrays, e.g. it's a base class
for `f32[jnp.ndarray, "foo"]`.
for `f32[Array, "foo"]`.
+1 -2
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@@ -7,8 +7,7 @@ Type annotations **and runtime checking** for:
**For example:**
```python
from jaxtyping import Float, PyTree
from jax.numpy import ndarray as Array
from jaxtyping import Array, Float, PyTree
def matrix_multiply(x: Float[Array, "dim1 dim2"],
y: Float[Array, "dim2 dim3"]
+9
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@@ -22,6 +22,7 @@ import functools as ft
from typing import Any, Dict, List, NoReturn, Optional, Tuple, TYPE_CHECKING, Union
from typing_extensions import Literal
import jax.numpy as jnp
import numpy as np
from .decorator import storage
@@ -261,6 +262,8 @@ class _MetaAbstractDtype(type):
"array type. For example `jaxtyping.f32[jnp.ndarray, 'foo bar']`."
)
array_type, dim_str = item
if array_type is Array:
array_type = jnp.ndarray
del item
if not isinstance(dim_str, str):
raise ValueError(
@@ -451,6 +454,8 @@ if TYPE_CHECKING:
from typing_extensions import Annotated as u16
from typing_extensions import Annotated as u32
from typing_extensions import Annotated as u64
from jax.numpy import ndarray as Array
else:
_bool = "bool"
_uint8 = "uint8"
@@ -518,4 +523,8 @@ else:
c = _make_dtype(_bool, "c", _deprecated=Complex)
x = _make_dtype(_bool, "x", _deprecated=Inexact)
n = _make_dtype(_bool, "n", _deprecated=Num)
# Note that Array also has a non-deprecated use-case as
# `f32[Array, "foo"]`.
# TODO: once these deprecations are removed, then just have a
# `from jax.numpy import ndarray as Array` in `__init__.py`.
Array = _make_dtype(_bool, "Array", _deprecated=Shaped)
+1 -4
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@@ -21,14 +21,11 @@ import jax.numpy as jnp
import jax.random as jr
import pytest
from jaxtyping import f32, Float, jaxtyped, Shaped
from jaxtyping import Array, f32, Float, jaxtyped, Shaped
from .helpers import ParamError, ReturnError
Array = jnp.ndarray
def test_basic(typecheck):
@jaxtyped
@typecheck