Merge branch 'main' into feedback-update

This commit is contained in:
moririn2528
2023-09-14 13:39:02 +09:00
6 changed files with 257 additions and 33 deletions
+27
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@@ -29,7 +29,10 @@ from ._custom_plot_data import get_plotly_graph_objects
from ._importance import get_param_importance_from_trials_cache
from ._pareto_front import get_pareto_front_trials
from ._preferential_history import NewHistory
from ._preferential_history import PreferenceHistoryNotFound
from ._preferential_history import remove_history
from ._preferential_history import report_history
from ._preferential_history import restore_history
from ._rdb_migration import register_rdb_migration_route
from ._serializer import serialize_study_detail
from ._serializer import serialize_study_summary
@@ -306,6 +309,30 @@ def create_app(
response.status = 204
return {}
@app.delete("/api/studies/<study_id:int>/preference/<history_id>")
@json_api_view
def remove_preference(study_id: int, history_id: str) -> dict[str, Any]:
try:
remove_history(study_id, storage, history_id)
except PreferenceHistoryNotFound:
response.status = 404
return {"reason": f"history_id={history_id} is not found"}
response.status = 204
return {}
@app.post("/api/studies/<study_id:int>/preference/<history_id>")
@json_api_view
def restore_preference(study_id: int, history_id: str) -> dict[str, Any]:
try:
restore_history(study_id, storage, history_id)
except PreferenceHistoryNotFound:
response.status = 404
return {"reason": f"history_id={history_id} is not found"}
response.status = 204
return {}
@app.post("/api/trials/<trial_id:int>/tell")
@json_api_view
def tell_trial(trial_id: int) -> dict[str, Any]:
+40 -10
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@@ -4,10 +4,10 @@ from dataclasses import dataclass
from datetime import datetime
import json
from typing import TYPE_CHECKING
import uuid
from optuna.storages import BaseStorage
from .preferential._system_attrs import _SYSTEM_ATTR_PREFIX_PREFERENCE
from .preferential._system_attrs import report_preferences
@@ -23,13 +23,24 @@ if TYPE_CHECKING:
{
"mode": FeedbackMode,
"id": str,
"preference_id": str,
"timestamp": str,
"candidates": list[int],
"clicked": int,
"preferences": list[tuple[int, int]],
},
)
History = ChooseWorstHistory
SerializedHistory = TypedDict(
"SerializedHistory",
{
"history": History,
"is_removed": bool,
},
)
class PreferenceHistoryNotFound(Exception):
pass
@dataclass
@@ -43,14 +54,14 @@ def report_history(
study_id: int,
storage: BaseStorage,
input_data: NewHistory,
) -> None:
) -> str:
preferences = []
# TODO(moririn): Use TypeGuard after adding other history types.
if input_data.mode == "ChooseWorst":
preferences = [
(best, input_data.clicked)
for best in input_data.candidates
if best != input_data.clicked
(better, input_data.clicked)
for better in input_data.candidates
if better != input_data.clicked
]
else:
assert False, f"Unknown data: {input_data}"
@@ -60,21 +71,40 @@ def report_history(
storage=storage,
preferences=preferences,
)
history_id = str(uuid.uuid4())
if input_data.mode == "ChooseWorst":
history: ChooseWorstHistory = {
"mode": "ChooseWorst",
"id": history_id,
"preference_id": preference_id,
"id": preference_id,
"timestamp": datetime.now().isoformat(),
"candidates": input_data.candidates,
"clicked": input_data.clicked,
"preferences": preferences,
}
key = _SYSTEM_ATTR_PREFIX_HISTORY + history_id
key = _SYSTEM_ATTR_PREFIX_HISTORY + preference_id
storage.set_study_system_attr(
study_id=study_id,
key=key,
value=json.dumps(history),
)
return preference_id
def remove_history(study_id: int, storage: BaseStorage, history_id: str) -> None:
system_attrs = storage.get_study_system_attrs(study_id)
history_key = _SYSTEM_ATTR_PREFIX_HISTORY + history_id
if history_key not in system_attrs:
raise PreferenceHistoryNotFound
storage.set_study_system_attr(study_id, _SYSTEM_ATTR_PREFIX_PREFERENCE + history_id, [])
def restore_history(study_id: int, storage: BaseStorage, history_id: str) -> None:
system_attrs = storage.get_study_system_attrs(study_id)
history_key = _SYSTEM_ATTR_PREFIX_HISTORY + history_id
if history_key not in system_attrs:
raise PreferenceHistoryNotFound
history: History = json.loads(system_attrs.get(history_key, ""))
storage.set_study_system_attr(
study_id, _SYSTEM_ATTR_PREFIX_PREFERENCE + history_id, history["preferences"]
)
+13 -7
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@@ -19,14 +19,15 @@ from ._preferential_history import _SYSTEM_ATTR_PREFIX_HISTORY
from .artifact._backend import list_trial_artifacts
from .preferential._study import _SYSTEM_ATTR_PREFERENTIAL_STUDY
from .preferential._system_attrs import get_preferences
from .preferential._system_attrs import is_preference_removed
if TYPE_CHECKING:
from typing import Literal
from typing import TypedDict
from ._preferential_history import ChooseWorstHistory
from ._preferential_history import History
from ._preferential_history import SerializedHistory
Attribute = TypedDict(
"Attribute",
@@ -174,24 +175,29 @@ def serialize_study_detail(
def serialize_preference_history(
system_attrs: dict[str, Any],
) -> list[History]:
histories: list[History] = []
) -> list[SerializedHistory]:
histories: list[SerializedHistory] = []
for k, v in system_attrs.items():
if not k.startswith(_SYSTEM_ATTR_PREFIX_HISTORY):
continue
choice: dict[str, Any] = json.loads(v)
if choice["mode"] == "ChooseWorst":
history: ChooseWorstHistory = {
history: History = {
"mode": "ChooseWorst",
"id": choice["id"],
"preference_id": choice["preference_id"],
"timestamp": choice["timestamp"],
"candidates": choice["candidates"],
"clicked": choice["clicked"],
"preferences": choice["preferences"],
}
histories.append(history)
histories.append(
{
"history": history,
"is_removed": is_preference_removed(system_attrs, choice["id"]),
}
)
histories.sort(key=lambda c: datetime.fromisoformat(c["timestamp"]))
histories.sort(key=lambda c: datetime.fromisoformat(c["history"]["timestamp"]))
return histories
@@ -44,6 +44,12 @@ def get_preferences(study_system_attrs: dict[str, Any]) -> list[tuple[int, int]]
return preferences
def is_preference_removed(study_system_attrs: dict[str, Any], preference_id: str) -> bool:
key = _SYSTEM_ATTR_PREFIX_PREFERENCE + preference_id
preference = study_system_attrs.get(key, [])
return len(preference) == 0
def report_skip(
study_id: int,
trial_id: int,
+80
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@@ -8,6 +8,10 @@ from optuna import get_all_study_summaries
from optuna.study import StudyDirection
from optuna_dashboard._app import create_app
from optuna_dashboard._app import create_new_study
from optuna_dashboard._preferential_history import NewHistory
from optuna_dashboard._preferential_history import remove_history
from optuna_dashboard._preferential_history import report_history
from optuna_dashboard._serializer import serialize_preference_history
from optuna_dashboard.preferential import create_study
from .wsgi_client import send_request
@@ -203,6 +207,82 @@ class APITestCase(TestCase):
assert len(best_trials) == 1
assert best_trials[0].number == 2
def test_remove_history(self) -> None:
storage = optuna.storages.InMemoryStorage()
study = create_study(storage=storage, n_generate=3)
for _ in range(3):
study.ask()
app = create_app(storage)
study_id = study._study._study_id
history_id = report_history(
study_id,
storage,
NewHistory(
mode="ChooseWorst",
candidates=[0, 1, 2],
clicked=2,
),
)
histories = serialize_preference_history(storage.get_study_system_attrs(study_id))
assert len(histories) == 1
assert not histories[0]["is_removed"]
status, _, _ = send_request(
app,
f"/api/studies/{study_id}/preference/{history_id}",
"DELETE",
content_type="application/json",
)
self.assertEqual(status, 204)
histories = serialize_preference_history(storage.get_study_system_attrs(study_id))
assert len(histories) == 1
assert histories[0]["is_removed"]
assert len(study.get_preferences()) == 0
def test_restore_history(self) -> None:
storage = optuna.storages.InMemoryStorage()
study = create_study(storage=storage, n_generate=3)
for _ in range(3):
study.ask()
app = create_app(storage)
study_id = study._study._study_id
history_id = report_history(
study_id,
storage,
NewHistory(
mode="ChooseWorst",
candidates=[0, 1, 2],
clicked=2,
),
)
remove_history(study_id, storage, history_id)
histories = serialize_preference_history(storage.get_study_system_attrs(study_id))
assert len(histories) == 1
assert histories[0]["is_removed"]
assert len(study.get_preferences()) == 0
status, _, _ = send_request(
app,
f"/api/studies/{study_id}/preference/{history_id}",
"POST",
content_type="application/json",
)
self.assertEqual(status, 204)
histories = serialize_preference_history(storage.get_study_system_attrs(study_id))
assert len(histories) == 1
assert not histories[0]["is_removed"]
preferences = study.get_preferences()
preferences.sort(key=lambda x: (x[0].number, x[1].number))
assert len(preferences) == 2
better, worse = preferences[0]
assert better.number == 0
assert worse.number == 2
better, worse = preferences[1]
assert better.number == 1
assert worse.number == 2
def test_create_study(self) -> None:
for name, directions, expected_status in [
("single-objective success", ["minimize"], 201),
+91 -16
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@@ -1,9 +1,15 @@
from __future__ import annotations
import json
from typing import Callable
from typing import TYPE_CHECKING
from optuna.storages import BaseStorage
from optuna_dashboard._preferential_history import _SYSTEM_ATTR_PREFIX_HISTORY
from optuna_dashboard._preferential_history import NewHistory
from optuna_dashboard._preferential_history import remove_history
from optuna_dashboard._preferential_history import report_history
from optuna_dashboard._preferential_history import restore_history
from optuna_dashboard._serializer import serialize_preference_history
from optuna_dashboard.preferential import create_study
from optuna_dashboard.preferential._system_attrs import _SYSTEM_ATTR_PREFIX_PREFERENCE
@@ -12,6 +18,10 @@ from .storage_supplier import parametrize_storages
from .storage_supplier import StorageSupplier
if TYPE_CHECKING:
from optuna_dashboard._preferential_history import History
@parametrize_storages
def test_report_and_get_choices(storage_supplier: Callable[[], StorageSupplier]) -> None:
with storage_supplier() as storage:
@@ -25,37 +35,102 @@ def test_report_and_get_choices(storage_supplier: Callable[[], StorageSupplier])
report_history(
study_id=study_id,
storage=storage,
input_data=NewHistory(
mode="ChooseWorst",
candidates=[0, 1, 2],
clicked=1,
),
input_data=NewHistory(mode="ChooseWorst", candidates=[0, 1, 2], clicked=1),
)
report_history(
study_id=study_id,
storage=storage,
input_data=NewHistory(
mode="ChooseWorst",
candidates=[0, 2, 3, 4],
clicked=0,
),
input_data=NewHistory(mode="ChooseWorst", candidates=[0, 2, 3, 4], clicked=0),
)
history = serialize_preference_history(storage.get_study_system_attrs(study_id))
sys_attrs = storage.get_study_system_attrs(study_id)
assert len(history) == 2
assert history[0]["candidates"] == [0, 1, 2]
assert history[0]["clicked"] == 1
preferences = sys_attrs[_SYSTEM_ATTR_PREFIX_PREFERENCE + history[0]["preference_id"]]
assert history[0]["history"]["candidates"] == [0, 1, 2]
assert history[0]["history"]["clicked"] == 1
preferences = sys_attrs[_SYSTEM_ATTR_PREFIX_PREFERENCE + history[0]["history"]["id"]]
assert len(preferences) == 2
for i, (best, worst) in enumerate([(0, 1), (2, 1)]):
assert len(preferences[i]) == 2
assert preferences[i][0] == best
assert preferences[i][1] == worst
assert history[1]["candidates"] == [0, 2, 3, 4]
assert history[1]["clicked"] == 0
preferences = sys_attrs[_SYSTEM_ATTR_PREFIX_PREFERENCE + history[1]["preference_id"]]
assert history[1]["history"]["candidates"] == [0, 2, 3, 4]
assert history[1]["history"]["clicked"] == 0
preferences = sys_attrs[_SYSTEM_ATTR_PREFIX_PREFERENCE + history[1]["history"]["id"]]
assert len(preferences) == 3
for i, (best, worst) in enumerate([(2, 0), (3, 0), (4, 0)]):
assert len(preferences[i]) == 2
assert preferences[i][0] == best
assert preferences[i][1] == worst
def get_preferences_history(
study_id: int,
storage: BaseStorage,
history_id: str,
) -> tuple[list[tuple[int, int]], History]:
system_attrs = storage.get_study_system_attrs(study_id)
history: History = json.loads(system_attrs.get(_SYSTEM_ATTR_PREFIX_HISTORY + history_id, ""))
preference: list[tuple[int, int]] = system_attrs.get(
_SYSTEM_ATTR_PREFIX_PREFERENCE + history_id, []
)
return preference, history
@parametrize_storages
def test_remove_history(storage_supplier: Callable[[], StorageSupplier]) -> None:
with storage_supplier() as storage:
study = create_study(storage=storage, n_generate=5)
for _ in range(5):
trial = study.ask()
trial.suggest_float("x", 0, 1)
study_id = study._study._study_id
history_id = report_history(
study_id=study_id,
storage=storage,
input_data=NewHistory(mode="ChooseWorst", candidates=[0, 1, 2], clicked=1),
)
remove_history(study_id, storage, history_id)
preference, history = get_preferences_history(study_id, storage, history_id)
assert history["mode"] == "ChooseWorst"
assert history["candidates"] == [0, 1, 2]
assert history["clicked"] == 1
assert len(preference) == 0
remove_history(study_id, storage, history_id)
preference, history = get_preferences_history(study_id, storage, history_id)
assert len(preference) == 0
@parametrize_storages
def test_restore_history(storage_supplier: Callable[[], StorageSupplier]) -> None:
with storage_supplier() as storage:
study = create_study(storage=storage, n_generate=5)
for _ in range(5):
trial = study.ask()
trial.suggest_float("x", 0, 1)
study_id = study._study._study_id
history_id = report_history(
study_id=study_id,
storage=storage,
input_data=NewHistory(mode="ChooseWorst", candidates=[0, 1, 2], clicked=1),
)
remove_history(study_id, storage, history_id)
preference, history = get_preferences_history(study_id, storage, history_id)
assert len(preference) == 0
restore_history(study_id, storage, history_id)
preference, history = get_preferences_history(study_id, storage, history_id)
assert history["mode"] == "ChooseWorst"
assert history["candidates"] == [0, 1, 2]
assert history["clicked"] == 1
assert len(preference) == 2
for i, (best, worst) in enumerate([(0, 1), (2, 1)]):
assert len(preference[i]) == 2
assert preference[i][0] == best
assert preference[i][1] == worst
restore_history(study_id, storage, history_id)
preference, history = get_preferences_history(study_id, storage, history_id)
assert len(preference) == 2