removed old template

This commit is contained in:
William Falcon
2019-07-27 13:59:20 -04:00
45 changed files with 2921 additions and 473 deletions
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@@ -9,6 +9,7 @@ model_weights/
app/models/
pip-wheel-metadata/
test_tube_exp/
tests/tests_tt_dir/
# Byte-compiled / optimized / DLL files
__pycache__/
@@ -119,4 +120,4 @@ ENV/
.mypy_cache/
# data
mnist/
mnist/
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@@ -0,0 +1,19 @@
# .readthedocs.yml
# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
# Required
version: 2
# Build documentation with MkDocs
mkdocs:
configuration: mkdocs.yml
# Optionally build your docs in additional formats such as PDF and ePub
formats: all
# Optionally set the version of Python and requirements required to build your docs
python:
version: 3.7
install:
- requirements: docs/doc_requirements.txt
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@@ -0,0 +1,16 @@
language: python
python:
- "3.7"
# command to install dependencies
cache: pip
install:
- pip install -e .
- pip install -r requirements.txt
- pip install -U numpy
# keep build from timing out
dist: xenial
# command to run tests
script:
- py.test # or py.test for Python versions 3.5 and below
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@@ -9,31 +9,103 @@
<p align="center">
The Keras for ML researchers using PyTorch. More control. Less boilerplate.
</p>
<p align="center">
<a href="https://badge.fury.io/py/pytorch-lightning"><img src="https://badge.fury.io/py/pytorch-lightning.svg" alt="PyPI version" height="18"></a>
<!-- <a href="https://travis-ci.org/williamFalcon/test-tube"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a> -->
<a href="https://pepy.tech/project/pytorch-lightning"><img src="https://pepy.tech/badge/pytorch-lightning" alt="PyPI version" height="18"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/tree/master/tests"><img src="https://github.com/williamFalcon/pytorch-lightning/blob/master/coverage.svg"></a>
<a href="https://travis-ci.org/williamFalcon/pytorch-lightning"><img src="https://travis-ci.org/williamFalcon/pytorch-lightning.svg?branch=master"></a>
<a href="https://williamfalcon.github.io/pytorch-lightning/"><img src="https://readthedocs.org/projects/pytorch-lightning/badge/?version=latest"></a>
<a href="https://github.com/williamFalcon/pytorch-lightning/blob/master/COPYING"><img src="https://img.shields.io/badge/License-MIT-yellow.svg"></a>
</p>
```bash
pip install pytorch-lightning
pip install pytorch-lightning
```
## Docs
**[View the docs here](https://williamfalcon.github.io/pytorch-lightning/)**
## What is it?
Keras and fast.ai are too abstract for researchers. Lightning abstracts the full training loop but gives you control in the critical points.
Lightning defers training and validation loop logic to you. It guarantees correct, modern best practices for the core training logic.
## Why do I want to use lightning?
Because you don't want to define a training loop, validation loop, gradient clipping, checkpointing, loading,
gpu training, etc... every time you start a project. Let lightning handle all of that for you! Just define your
data and what happens in the training, testing and validation loop and lightning will do the rest.
When starting a new project the last thing you want to do is recode a training loop, model loading/saving, distributed training, when to validate, etc... You're likely to spend a long time ironing out all the bugs without even getting to the core of your research.
With lightning, you guarantee those parts of your code work so you can focus on what the meat of the research: Data and training, validation loop logic. Don't worry about multiple gpus or speeding up your code, lightning will do that for you!
## How do I do use it?
To use lightning do 2 things:
1. [Define a Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_cpu_template.py).
2. [Define a LightningModel](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/lightning_module_template.py).
1. [Define a LightningModel](https://williamfalcon.github.io/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
```python
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
```
2. Fit with a [trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
```python
from pytorch_lightning import Trainer
from test_tube import Experiment
model = CoolModel()
# fit on 32 gpus across 4 nodes
exp = Experiment(save_dir='some/dir')
trainer = Trainer(experiment=exp, nb_gpu_nodes=4, gpus=[0,1,2,3,4,5,6,7])
trainer.fit(model)
# see all experiment metrics here
# tensorboard --log_dir some/dir
```
## What does lightning control for me?
Everything!
@@ -116,8 +188,8 @@ def validation_end(self, outputs):
return tqdm_dic
```
## TensorboardX
Lightning is fully integrated with tensorboardX.
## Tensorboard
Lightning is fully integrated with tensorboard.
<p align="center">
<a href="https://williamfalcon.github.io/pytorch-lightning/">
@@ -148,7 +220,7 @@ And run tensorboard from that dir
tensorboard --logdir /some/path
```
## Lightning automatically automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
## Lightning automates all of the following ([each is also configurable](https://williamfalcon.github.io/pytorch-lightning/Trainer/)):
###### Checkpointing
@@ -215,19 +287,22 @@ pip install pytorch-lightning
# clone lightning for the demo
git clone https://github.com/williamFalcon/pytorch-lightning.git
cd examples/new_project_templates/
cd pytorch_lightning/examples/new_project_templates/
# run demo (on cpu)
python trainer_gpu_cluster_template.py
# all of the following demos use the SAME model to show no modification needs to be made to your code
# train on cpu
python single_cpu_template.py
# train on multiple-gpus
python single_gpu_node_template.py --gpus "0,1"
# train on 32 gpus on a cluster (run on a SLURM managed cluster)
python multi_node_cluster_template.py --nb_gpu_nodes 4 --gpus '0,1,2,3,4,5,6,7'
```
Without changing the model AT ALL, you can run the model on a single gpu, over multiple gpus, or over multiple nodes.
## Bleeding edge
If you can't wait for the next release, install the most up to date code with:
```bash
# run a grid search on two gpus
python fully_featured_trainer.py --gpus "0;1"
# run single model on multiple gpus
python fully_featured_trainer.py --gpus "0;1" --interactive
```
pip install git+https://github.com/williamFalcon/pytorch-lightning.git@master --upgrade
```
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<?xml version="1.0" encoding="UTF-8"?>
<svg xmlns="http://www.w3.org/2000/svg" width="99" height="20">
<linearGradient id="b" x2="0" y2="100%">
<stop offset="0" stop-color="#bbb" stop-opacity=".1"/>
<stop offset="1" stop-opacity=".1"/>
</linearGradient>
<mask id="a">
<rect width="99" height="20" rx="3" fill="#fff"/>
</mask>
<g mask="url(#a)">
<path fill="#555" d="M0 0h63v20H0z"/>
<path fill="#4c1" d="M63 0h36v20H63z"/>
<path fill="url(#b)" d="M0 0h99v20H0z"/>
</g>
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
<text x="31.5" y="15" fill="#010101" fill-opacity=".3">coverage</text>
<text x="31.5" y="14">coverage</text>
<text x="80" y="15" fill="#010101" fill-opacity=".3">99%</text>
<text x="80" y="14">99%</text>
</g>
</svg>

After

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A lightning module is a strict superclass of nn.Module, it provides a standard interface for the trainer to interact with the model.
The easiest thing to do is copy [this template](../../examples/new_project_templates/lightning_module_template.py) and modify accordingly.
The easiest thing to do is copy [this template](../../pytorch_lightning/examples/new_project_templates/lightning_module_template.py) and modify accordingly.
Otherwise, to Define a Lightning Module, implement the following methods:
@@ -14,8 +14,6 @@ Otherwise, to Define a Lightning Module, implement the following methods:
- [validation_end](RequiredTrainerInterface.md#validation_end)
- [configure_optimizers](RequiredTrainerInterface.md#configure_optimizers)
- [get_save_dict](RequiredTrainerInterface.md#get_save_dict)
- [load_model_specific](RequiredTrainerInterface.md#load_model_specific)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
- [tng_dataloader](RequiredTrainerInterface.md#tng_dataloader)
@@ -23,9 +21,63 @@ Otherwise, to Define a Lightning Module, implement the following methods:
**Optional**:
- [on_save_checkpoint](RequiredTrainerInterface.md#on_save_checkpoint)
- [on_load_checkpoint](RequiredTrainerInterface.md#on_load_checkpoint)
- [update_tng_log_metrics](RequiredTrainerInterface.md#update_tng_log_metrics)
- [add_model_specific_args](RequiredTrainerInterface.md#add_model_specific_args)
---
**Minimal example**
```python
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
```
---
### training_step
@@ -193,34 +245,35 @@ def configure_optimizers(self):
```
---
### get_save_dict
### on_save_checkpoint
``` {.python}
def get_save_dict(self)
def on_save_checkpoint(self, checkpoint)
```
Called by lightning to checkpoint your model. Lightning saves current epoch, current batch nb, etc...
All you have to return is what specifically about your lightning model you want to checkpoint.
Called by lightning to checkpoint your model. Lightning saves the training state (current epoch, global_step, etc)
and also saves the model state_dict. If you want to save anything else, use this method to add your own
key-value pair.
##### Return
Dictionary - No required keys. Most of the time as described in this example.
Nothing
**Example**
``` {.python}
def get_save_dict(self):
# 99% of use cases this is all you need to return
checkpoint = {'state_dict': self.state_dict()}
return checkpoint
def on_save_checkpoint(self, checkpoint):
# 99% of use cases you don't need to implement this method
checkpoint['something_cool_i_want_to_save'] = my_cool_pickable_object
```
---
### load_model_specific
### on_load_checkpoint
``` {.python}
def load_model_specific(self, checkpoint)
def on_load_checkpoint(self, checkpoint)
```
Called by lightning to restore your model. This is your chance to restore your model using the keys you added in get_save_dict.
Lightning will automatically restore current epoch, batch nb, etc.
Called by lightning to restore your model. Lighting auto-restores global step, epoch, etc...
It also restores the model state_dict.
If you saved something with **on_save_checkpoint** this is your chance to restore this.
##### Return
Nothing
@@ -228,19 +281,19 @@ Nothing
**Example**
``` {.python}
def load_model_specific(self, checkpoint):
# you defined 'state_dict' in get_save_dict()
self.load_state_dict(checkpoint['state_dict'])
def on_load_checkpoint(self, checkpoint):
# 99% of the time you don't need to implement this method
self.something_cool_i_want_to_save = checkpoint['something_cool_i_want_to_save']
```
---
### tng_dataloader
``` {.python}
@property
@ptl.data_loader
def tng_dataloader(self)
```
Called by lightning during training loop. Define it as a property.
Called by lightning during training loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
@@ -248,32 +301,26 @@ Pytorch DataLoader
**Example**
``` {.python}
@property
@ptl.data_loader
def tng_dataloader(self):
if self._tng_dataloader is None:
try:
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
self._tng_dataloader = loader
except Exception as e:
raise e
return self._tng_dataloader
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=True, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### val_dataloader
``` {.python}
@property
@ptl.data_loader
def tng_dataloader(self)
```
Called by lightning during validation loop. Define it as a property.
Called by lightning during validation loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
@@ -281,32 +328,27 @@ Pytorch DataLoader
**Example**
``` {.python}
@property
@ptl.data_loader
def val_dataloader(self):
if self._val_dataloader is None:
try:
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
self._val_dataloader = loader
except Exception as e:
raise e
return self._val_dataloader
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
### test_dataloader
``` {.python}
@property
@ptl.data_loader
def test_dataloader(self)
```
Called by lightning during test loop. Define it as a property.
Called by lightning during test loop. Make sure to use the @ptl.data_loader decorator, this ensures not calling this function until the data are needed.
##### Return
Pytorch DataLoader
@@ -314,22 +356,17 @@ Pytorch DataLoader
**Example**
``` {.python}
@property
@ptl.data_loader
def test_dataloader(self):
if self._test_dataloader is None:
try:
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
self._test_dataloader = loader
except Exception as e:
raise e
return self._test_dataloader
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root='/path/to/mnist/', train=False, transform=transform, download=True)
loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=self.hparams.batch_size,
shuffle=True
)
return loader
```
---
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@@ -21,7 +21,8 @@ pretrained_model = MyLightningModule.load_from_metrics(
map_location=None
)
# predict
# predict
pretrained_model.eval()
pretrained_model.freeze()
y_hat = pretrained_model(x)
```
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@@ -3,6 +3,26 @@ Lightning makes multi-gpu training and 16 bit training trivial.
*Note:*
None of the flags below require changing anything about your lightningModel definition.
---
#### Choosing a backend
Lightning supports two backends. DataParallel and DistributedDataParallel. Both can be used for single-node multi-GPU training.
For multi-node training you must use DistributedDataParallel.
You can toggle between each mode by setting this flag.
``` {.python}
# DEFAULT uses DataParallel
trainer = Trainer(distributed_backend='dp')
# change to distributed data parallel
trainer = Trainer(distributed_backend='ddp')
```
If you request multiple nodes, the back-end will auto-switch to ddp.
We recommend you use DistributedDataparallel even for single-node multi-GPU training. It is MUCH faster than DP but *may*
have configuration issues depending on your cluster.
For a deeper understanding of what lightning is doing, feel free to read [this guide](https://medium.com/@_willfalcon/9-tips-for-training-lightning-fast-neural-networks-in-pytorch-8e63a502f565).
---
#### 16-bit mixed precision
16 bit precision can cut your memory footprint by half. If using volta architecture GPUs it can give a dramatic training speed-up as well.
@@ -37,16 +57,69 @@ Make sure you're on a GPU machine. You can set as many GPUs as you want.
In this setting, the model will run on all 8 GPUs at once using DataParallel under the hood.
```python
# set these flags
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"] = "0,1,2,3,4,5,6,7"
# lightning sets these flags for you automatically
# no need to set yourself
# os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
# os.environ["CUDA_VISIBLE_DEVICES"] = "0,1,2,3,4,5,6,7"
# DEFAULT
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7])
# to use DataParallel (default)
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='dp')
# RECOMMENDED use DistributedDataParallel
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], distributed_backend='ddp')
```
---
#### Multi-node
COMING SOON.
Multi-node training is easily done by specifying these flags.
```python
# train on 12*8 GPUs
trainer = Trainer(gpus=[0,1,2,3,4,5,6,7], nb_gpu_nodes=12)
```
In addition, make sure to set up your SLURM job correctly via the [SlurmClusterObject](https://williamfalcon.github.io/test-tube/hpc/SlurmCluster/). In particular, specify the number of tasks per node correctly.
```python
cluster = SlurmCluster(
hyperparam_optimizer=test_tube.HyperOptArgumentParser(),
log_path='/some/path/to/save',
)
# OPTIONAL FLAGS WHICH MAY BE CLUSTER DEPENDENT
# which interface your nodes use for communication
cluster.add_command('export NCCL_SOCKET_IFNAME=^docker0,lo')
# see output of the NCCL connection process
# NCCL is how the nodes talk to each other
cluster.add_command('export NCCL_DEBUG=INFO')
# setting a master port here is a good idea.
cluster.add_command(f'export MASTER_PORT={PORT}')
# good to load the latest NCCL version
cluster.load_modules(['NCCL/2.4.7-1-cuda.10.0'])
# configure cluster
cluster.per_experiment_nb_nodes = 12
cluster.per_experiment_nb_gpus = 8
cluster.add_slurm_cmd(cmd='ntasks-per-node', value=8, comment='1 task per gpu')
```
Finally, make sure to add a distributed sampler to your dataset. The distributed sampler copies a
portion of your dataset onto each GPU. (World_size = gpus_per_node * nb_nodes).
```python
# ie: this:
dataset = myDataset()
dataloader = Dataloader(dataset)
# becomes:
dataset = myDataset()
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
dataloader = Dataloader(dataset, sampler=dist_sampler)
```
---
#### Self-balancing architecture
+1 -1
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@@ -19,7 +19,7 @@ Cut the learning rate by 10 at every epoch listed in this list.
trainer = Trainer(lr_scheduler_milestones=None)
# cut LR by 10 at 100, 200, and 300 epochs
trainer = Trainer(lr_scheduler_milestones=[100, 200, 300])
trainer = Trainer(lr_scheduler_milestones='100, 200, 300')
```
---
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@@ -0,0 +1 @@
mkdocs-material==4.4.0
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@@ -1,10 +1,11 @@
###### New project Quick Start
To start a new project define these two files.
1. [Define a LightningModule](/LightningModule/RequiredTrainerInterface/#template-model-definition)
2. Pick a trainer
- [Basic CPU Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_cpu_template.py)
- [GPU cluster Trainer](https://github.com/williamFalcon/pytorch-lightning/blob/master/examples/new_project_templates/trainer_gpu_cluster_template.py)
1. [Define a LightningModule](/pytorch-lightning/LightningModule/RequiredTrainerInterface/)
2. [Define a trainer](https://williamfalcon.github.io/pytorch-lightning/Trainer/)
- [Basic CPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_cpu_template.py)
- [Multi-GPU Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/single_gpu_node_template.py)
- [GPU cluster Trainer Template](https://github.com/williamFalcon/pytorch-lightning/blob/master/pytorch_lightning/examples/new_project_templates/multi_node_cluster_template.py)
###### Docs shortcuts
- [LightningModule](LightningModule/RequiredTrainerInterface/)
@@ -1 +0,0 @@
from .lightning_module_template import LightningTemplateModel
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@@ -1,2 +1,3 @@
from .models import Trainer
from .root_module.root_module import LightningModule
from .root_module.root_module import LightningModule
from .root_module.decorators import data_loader
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@@ -0,0 +1 @@
from .new_project_templates.lightning_module_template import LightningTemplateModel
@@ -10,6 +10,7 @@ from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
import pytorch_lightning as ptl
from pytorch_lightning.root_module.root_module import LightningModule
@@ -24,10 +25,14 @@ class LightningTemplateModel(LightningModule):
:param hparams:
"""
# init superclass
super(LightningTemplateModel, self).__init__(hparams)
super(LightningTemplateModel, self).__init__()
self.hparams = hparams
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# build model
self.__build_model()
@@ -78,15 +83,21 @@ class LightningTemplateModel(LightningModule):
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
output = OrderedDict({
'loss': loss_val,
'tqdm_metrics': {}
'loss': loss_val
})
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_step(self, data_batch, batch_i):
@@ -104,11 +115,22 @@ class LightningTemplateModel(LightningModule):
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
output = OrderedDict({
'val_loss': loss_val,
'val_acc': torch.tensor(val_acc),
'val_acc': val_acc,
})
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_end(self, outputs):
@@ -117,6 +139,10 @@ class LightningTemplateModel(LightningModule):
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
@@ -128,20 +154,6 @@ class LightningTemplateModel(LightningModule):
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
def update_tng_log_metrics(self, logs):
return logs
# ---------------------
# MODEL SAVING
# ---------------------
def get_save_dict(self):
checkpoint = {'state_dict': self.state_dict()}
return checkpoint
def load_model_specific(self, checkpoint):
self.load_state_dict(checkpoint['state_dict'])
pass
# ---------------------
# TRAINING SETUP
# ---------------------
@@ -179,38 +191,23 @@ class LightningTemplateModel(LightningModule):
return loader
@property
@ptl.data_loader
def tng_dataloader(self):
if self._tng_dataloader is None:
try:
self._tng_dataloader = self.__dataloader(train=True)
except Exception as e:
print(e)
raise e
return self._tng_dataloader
print('tng data loader called')
return self.__dataloader(train=True)
@property
@ptl.data_loader
def val_dataloader(self):
if self._val_dataloader is None:
try:
self._val_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._val_dataloader
print('val data loader called')
return self.__dataloader(train=False)
@property
@ptl.data_loader
def test_dataloader(self):
if self._test_dataloader is None:
try:
self._test_dataloader = self.__dataloader(train=False)
except Exception as e:
print(e)
raise e
return self._test_dataloader
print('test data loader called')
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir):
def add_model_specific_args(parent_parser, root_dir): # pragma: no cover
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
@@ -0,0 +1,112 @@
"""
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
print('loading model...')
model = LightningTemplateModel(hparams)
print('model built')
# ------------------------
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name=hyperparams.experiment_name,
save_dir=hyperparams.test_tube_save_path,
autosave=False,
description='test demo'
)
exp.argparse(hparams)
exp.save()
# ------------------------
# 3 DEFINE CALLBACKS
# ------------------------
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
early_stop = EarlyStopping(
monitor='val_acc',
patience=3,
verbose=True,
mode='max'
)
checkpoint = ModelCheckpoint(
filepath=model_save_path,
save_best_only=True,
verbose=True,
monitor='val_loss',
mode='min'
)
# ------------------------
# 4 INIT TRAINER
# ------------------------
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
)
# ------------------------
# 5 START TRAINING
# ------------------------
trainer.fit(model)
if __name__ == '__main__':
# dirs
root_dir = os.path.dirname(os.path.realpath(__file__))
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
# although we user hyperOptParser, we are using it only as argparse right now
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='-1', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
# ---------------------
# RUN TRAINING
# ---------------------
# run on HPC cluster
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
main(hyperparams)
@@ -0,0 +1,112 @@
"""
Runs a model on a single node across N-gpus.
"""
import os
import sys
import numpy as np
from time import sleep
import torch
from test_tube import HyperOptArgumentParser, Experiment, SlurmCluster
from pytorch_lightning.models.trainer import Trainer
from pytorch_lightning.utils.arg_parse import add_default_args
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
from lightning_module_template import LightningTemplateModel
def main(hparams):
"""
Main training routine specific for this project
:param hparams:
:return:
"""
# ------------------------
# 1 INIT LIGHTNING MODEL
# ------------------------
print('loading model...')
model = LightningTemplateModel(hparams)
print('model built')
# ------------------------
# 2 INIT TEST TUBE EXP
# ------------------------
# init experiment
exp = Experiment(
name=hyperparams.experiment_name,
save_dir=hyperparams.test_tube_save_path,
autosave=False,
description='test demo'
)
exp.argparse(hparams)
exp.save()
# ------------------------
# 3 DEFINE CALLBACKS
# ------------------------
model_save_path = '{}/{}/{}'.format(hparams.model_save_path, exp.name, exp.version)
early_stop = EarlyStopping(
monitor='val_acc',
patience=3,
verbose=True,
mode='max'
)
checkpoint = ModelCheckpoint(
filepath=model_save_path,
save_best_only=True,
verbose=True,
monitor='val_loss',
mode='min'
)
# ------------------------
# 4 INIT TRAINER
# ------------------------
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
early_stop_callback=early_stop,
gpus=hparams.gpus,
)
# ------------------------
# 5 START TRAINING
# ------------------------
trainer.fit(model)
if __name__ == '__main__':
# dirs
root_dir = os.path.dirname(os.path.realpath(__file__))
demo_log_dir = os.path.join(root_dir, 'pt_lightning_demo_logs')
checkpoint_dir = os.path.join(demo_log_dir, 'model_weights')
test_tube_dir = os.path.join(demo_log_dir, 'test_tube_data')
# although we user hyperOptParser, we are using it only as argparse right now
parent_parser = HyperOptArgumentParser(strategy='grid_search', add_help=False)
# gpu args
parent_parser.add_argument('--gpus', type=str, default='0', help='how many gpus to use in the node. -1 uses all the gpus on the node')
parent_parser.add_argument('--test_tube_save_path', type=str, default=test_tube_dir, help='where to save logs')
parent_parser.add_argument('--model_save_path', type=str, default=checkpoint_dir, help='where to save model')
parent_parser.add_argument('--experiment_name', type=str, default='pt_lightning_exp_a', help='test tube exp name')
# allow model to overwrite or extend args
parser = LightningTemplateModel.add_model_specific_args(parent_parser, root_dir)
hyperparams = parser.parse_args()
# ---------------------
# RUN TRAINING
# ---------------------
# run on HPC cluster
print(f'RUNNING INTERACTIVE MODE ON GPUS. gpu ids: {hyperparams.gpus}')
main(hyperparams)
+891
View File
@@ -0,0 +1,891 @@
"""
The trainer handles all the logic for running a val loop, training loop, distributing, etc...
"""
import subprocess
import traceback
import warnings
import os
import pdb
import re
import torch
from torch.utils.data.distributed import DistributedSampler
from torch.optim.lr_scheduler import MultiStepLR
import torch.multiprocessing as mp
import torch.distributed as dist
import numpy as np
import tqdm
from pytorch_lightning.root_module.memory import get_gpu_memory_map
from pytorch_lightning.root_module.model_saving import TrainerIO
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
from pytorch_lightning.utils.debugging import MisconfigurationException
try:
from apex import amp
APEX_AVAILABLE = True
except Exception:
APEX_AVAILABLE = False
def reduce_distributed_output(output, nb_gpus):
if nb_gpus <= 1:
return output
# when using DP, we get one output per gpu
# average outputs and return
if type(output) is torch.Tensor:
return output.mean()
for k, v in output.items():
# recurse on nested dics
if isinstance(output[k], dict):
output[k] = reduce_distributed_output(output[k], nb_gpus)
# reduce only metrics that have the same nb of gpus
elif output[k].size(0) == nb_gpus:
reduced = torch.mean(output[k])
output[k] = reduced
return output
class Trainer(TrainerIO):
def __init__(self,
experiment,
early_stop_callback=None,
checkpoint_callback=None,
gradient_clip=0,
cluster=None,
process_position=0,
current_gpu_name=0,
nb_gpu_nodes=1,
gpus=None,
progress_bar=True,
overfit_pct=0.0,
track_grad_norm=-1,
check_val_every_n_epoch=1,
fast_dev_run=False,
accumulate_grad_batches=1,
max_nb_epochs=1000, min_nb_epochs=1,
train_percent_check=1.0, val_percent_check=1.0, test_percent_check=1.0,
val_check_interval=0.95,
log_save_interval=100, add_log_row_interval=10,
lr_scheduler_milestones=None,
distributed_backend='dp',
use_amp=False,
print_nan_grads=False,
print_weights_summary=True,
amp_level='O2',
nb_sanity_val_steps=5):
"""
:param experiment: Test-tube experiment
:param early_stop_callback: from pytorch_lightning import EarlyStopping
:param checkpoint_callback: from pytorch_lightning import Checkpoint
:param gradient_clip:
:param cluster:
:param process_position:
:param current_gpu_name:
:param nb_gpu_nodes:
:param gpus:
:param progress_bar:
:param overfit_pct:
:param track_grad_norm:
:param check_val_every_n_epoch:
:param fast_dev_run:
:param accumulate_grad_batches:
:param max_nb_epochs:
:param min_nb_epochs:
:param train_percent_check:
:param val_percent_check:
:param test_percent_check:
:param val_check_interval:
:param log_save_interval:
:param add_log_row_interval:
:param lr_scheduler_milestones:
:param distributed_backend: 'np' to use DistributedParallel, 'ddp' to use DistributedDataParallel
:param use_amp:
:param print_nan_grads:
:param print_weights_summary:
:param amp_level:
:param nb_sanity_val_steps:
"""
# Transfer params
self.nb_gpu_nodes = nb_gpu_nodes
self.gradient_clip = gradient_clip
self.check_val_every_n_epoch = check_val_every_n_epoch
self.enable_early_stop = early_stop_callback is not None
self.track_grad_norm = track_grad_norm
self.fast_dev_run = fast_dev_run
self.on_gpu = gpus is not None and torch.cuda.is_available()
self.progress_bar = progress_bar
self.experiment = experiment
self.exp_save_path = experiment.get_data_path(experiment.name, experiment.version)
self.cluster = cluster
self.process_position = process_position
self.current_gpu_name = current_gpu_name
self.print_weights_summary = print_weights_summary
self.checkpoint_callback = checkpoint_callback
if self.checkpoint_callback is not None:
self.checkpoint_callback.save_function = self.save_checkpoint
self.early_stop = early_stop_callback
self.model = None
self.max_nb_epochs = max_nb_epochs
self.accumulate_grad_batches = accumulate_grad_batches
self.early_stop_callback = early_stop_callback
self.min_nb_epochs = min_nb_epochs
self.nb_sanity_val_steps = nb_sanity_val_steps
self.lr_scheduler_milestones = [] if lr_scheduler_milestones is None else [int(x.strip()) for x in lr_scheduler_milestones.split(',')]
self.lr_schedulers = []
self.amp_level = amp_level
self.print_nan_grads = print_nan_grads
self.data_parallel_device_ids = None
self.world_size = 1
self.node_rank = 0
self.use_ddp = False
self.use_dp = False
# training bookeeping
self.total_batch_nb = 0
self.running_loss = []
self.avg_loss = 0
self.batch_nb = 0
self.tqdm_metrics = {}
self.nb_val_batches = None
self.nb_tng_batches = None
self.nb_test_batches = None
# gpus come in as a string.
# if gpus = -1 then use all available devices
# otherwise, split the string using commas
if gpus is not None:
if type(gpus) is list:
self.data_parallel_device_ids = gpus
elif type(gpus) is str:
if gpus == '-1':
self.data_parallel_device_ids = list(range(0, torch.cuda.device_count()))
else:
self.data_parallel_device_ids = [int(x.strip()) for x in gpus.split(',')]
else:
raise Exception('gpus has to be a string or list of ids')
# set the correct cuda visible devices (using pci order)
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"] = ','.join([str(x) for x in self.data_parallel_device_ids])
print(f'VISIBLE GPUS: {os.environ["CUDA_VISIBLE_DEVICES"]}')
# make DP and DDP mutually exclusive
# single GPU will also use DP with devices=[0]
have_gpus = self.data_parallel_device_ids is not None and len(self.data_parallel_device_ids) > 0
if have_gpus:
self.use_dp = distributed_backend == 'dp'
self.use_ddp = distributed_backend == 'ddp'
# use ddp automatically if nb_gpu_nodes > 1
if nb_gpu_nodes > 1 and self.use_dp: # pragma: no cover
self.use_ddp = True
self.use_dp = False
w = 'DataParallel does not support nb_gpu_nodes > 1. ' \
'Switching to DistributedDataParallel for you. ' \
'To silence this warning set distributed_backend=ddp'
warnings.warn(w)
# extract SLURM flag vars
# whenever we have the correct number of tasks, we let slurm manage processes
# otherwise we launch the required number of processes
if self.use_ddp:
self.nb_requested_gpus = len(self.data_parallel_device_ids) * self.nb_gpu_nodes
self.nb_slurm_tasks = 0
try:
self.nb_slurm_tasks = int(os.environ['SLURM_NTASKS'])
self.is_slurm_managing_tasks = self.nb_slurm_tasks == self.nb_requested_gpus
except Exception as e:
# likely not on slurm, so set the slurm managed flag to false
self.is_slurm_managing_tasks = False
# process info
self.proc_rank = 0
# training state
self.optimizers = None
self.prog_bar = None
self.global_step = 0
self.current_epoch = 0
self.total_batches = 0
# logging
self.log_save_interval = log_save_interval
self.val_check_interval = val_check_interval
self.add_log_row_interval = add_log_row_interval
# dataloaders
self.tng_dataloader = None
self.test_dataloader = None
self.val_dataloader = None
# how much of the data to use
self.__determine_data_use_amount(train_percent_check, val_percent_check, test_percent_check, overfit_pct)
print('gpu available: {}, used: {}'.format(torch.cuda.is_available(), self.on_gpu))
# 16 bit mixed precision training using apex
self.use_amp = use_amp and APEX_AVAILABLE
if self.use_amp:
print('using 16bit precision')
if use_amp and not APEX_AVAILABLE: # pragma: no cover
msg = '''
You set use_amp=True but do not have apex installed.
Install apex first using this guide and rerun with use_amp=True:
https://github.com/NVIDIA/apex#linux
this run will NOT use 16 bit precision
'''
raise ModuleNotFoundError(msg)
@property
def data_parallel(self):
return self.use_dp or self.use_ddp
def __determine_data_use_amount(self, train_percent_check, val_percent_check, test_percent_check, overfit_pct):
"""
Use less data for debugging purposes
"""
self.train_percent_check = train_percent_check
self.val_percent_check = val_percent_check
self.test_percent_check = test_percent_check
if overfit_pct > 0:
self.train_percent_check = overfit_pct
self.val_percent_check = overfit_pct
self.test_percent_check = overfit_pct
def __get_model(self):
return self.model.module if self.data_parallel else self.model
def __is_function_implemented(self, f_name):
model = self.__get_model()
f_op = getattr(model, f_name, None)
return callable(f_op)
@property
def __tng_tqdm_dic(self):
# ForkedPdb().set_trace()
tqdm_dic = {
'tng_loss': '{0:.3f}'.format(self.avg_loss),
'v_nb': '{}'.format(self.experiment.version),
'epoch': '{}'.format(self.current_epoch),
'batch_nb':'{}'.format(self.batch_nb),
}
tqdm_dic.update(self.tqdm_metrics)
if self.on_gpu:
tqdm_dic['gpu'] = '{}'.format(self.current_gpu_name)
return tqdm_dic
@property
def tng_tqdm_dic(self):
"""
Read-only for tqdm metrics
:return:
"""
return self.__tng_tqdm_dic
def __layout_bookeeping(self):
# determine number of training batches
self.nb_tng_batches = len(self.tng_dataloader)
self.nb_tng_batches = int(self.nb_tng_batches * self.train_percent_check)
# determine number of validation batches
self.nb_val_batches = len(self.val_dataloader)
self.nb_val_batches = int(self.nb_val_batches * self.val_percent_check)
self.nb_val_batches = max(1, self.nb_val_batches)
self.nb_val_batches = self.nb_val_batches
# determine number of test batches
self.nb_test_batches = len(self.test_dataloader)
self.nb_test_batches = int(self.nb_test_batches * self.test_percent_check)
# determine when to check validation
self.val_check_batch = int(self.nb_tng_batches * self.val_check_interval)
def __add_tqdm_metrics(self, metrics):
for k, v in metrics.items():
if type(v) is torch.Tensor:
v = v.item()
self.tqdm_metrics[k] = v
def validate(self, model, dataloader, max_batches):
"""
Run validation code
:param model: PT model
:param dataloader: PT dataloader
:param max_batches: Scalar
:return:
"""
# enable eval mode
model.zero_grad()
model.eval()
# disable gradients to save memory
torch.set_grad_enabled(False)
# bookkeeping
outputs = []
# run training
for batch_i, data_batch in enumerate(dataloader):
if data_batch is None: # pragma: no cover
continue
# stop short when on fast dev run
if max_batches is not None and batch_i >= max_batches:
break
# -----------------
# RUN VALIDATION STEP
# -----------------
if self.use_ddp:
output = model(data_batch, batch_i)
elif self.use_dp:
output = model(data_batch, batch_i)
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
else:
output = model.validation_step(data_batch, batch_i)
outputs.append(output)
# batch done
if self.progress_bar and self.prog_bar is not None:
self.prog_bar.update(1)
# give model a chance to do something with the outputs
if self.data_parallel:
val_results = model.module.validation_end(outputs)
else:
val_results = model.validation_end(outputs)
# enable train mode again
model.train()
# enable gradients to save memory
torch.set_grad_enabled(True)
return val_results
def get_dataloaders(self, model):
"""
Dataloaders are provided by the model
:param model:
:return:
"""
self.tng_dataloader = model.tng_dataloader
self.test_dataloader = model.test_dataloader
self.val_dataloader = model.val_dataloader
if self.use_ddp and not isinstance(self.tng_dataloader.sampler, DistributedSampler):
msg = '''
when using multiple gpus and multiple nodes you must pass a DistributedSampler to DataLoader(sampler).
ie: this:
dataset = myDataset()
dataloader = Dataloader(dataset)
becomes:
dataset = myDataset()
dist_sampler = torch.utils.data.distributed.DistributedSampler(dataset)
dataloader = Dataloader(dataset, sampler=dist_sampler)
'''
raise MisconfigurationException(msg)
# -----------------------------
# MODEL TRAINING
# -----------------------------
def fit(self, model):
# when using multi-node or DDP within a node start each module in a separate process
if self.use_ddp:
# must copy only the meta of the exp so it survives pickle/unpickle when going to new process
self.experiment = self.experiment.get_meta_copy()
if self.is_slurm_managing_tasks:
task = int(os.environ['SLURM_LOCALID'])
self.ddp_train(task, model)
else:
msg = f"""
You requested {self.nb_requested_gpus} GPUs but launched {self.nb_slurm_tasks} slurm tasks.
We will launch {self.nb_requested_gpus} processes for you.
We recommend you let slurm manage the processes by setting: --ntasks-per-node={self.nb_requested_gpus}
If you're not using SLURM, ignore this message!
"""
warnings.warn(msg)
mp.spawn(self.ddp_train, nprocs=len(self.data_parallel_device_ids), args=(model, ))
# 1 gpu or dp option triggers training using DP module
# easier to avoid NCCL issues
elif self.use_dp:
self.__dp_train(model)
# ON CPU
else:
# run through amp wrapper
if self.use_amp:
raise MisconfigurationException('amp + cpu is not supported. Please use a GPU option')
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
self.optimizers = model.configure_optimizers()
self.__run_pretrain_routine(model)
# return 1 when finished
# used for testing or when we need to know that training succeeded
return 1
def __dp_train(self, model):
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
self.optimizers = model.configure_optimizers()
model.cuda(self.data_parallel_device_ids[0])
# check for this bug (amp + dp + !01 doesn't work)
# https://github.com/NVIDIA/apex/issues/227
if self.use_dp and self.use_amp:
m = f'amp level {self.amp_level} with DataParallel is not supported. ' \
f'See this note from NVIDIA for more info: https://github.com/NVIDIA/apex/issues/227. ' \
f'We recommend you switch to ddp if you want to use amp'
raise MisconfigurationException(m)
model = LightningDataParallel(model, device_ids=self.data_parallel_device_ids)
self.__run_pretrain_routine(model)
def ddp_train(self, gpu_nb, model):
"""
Entry point into a DP thread
:param gpu_nb:
:param model:
:param cluster_obj:
:return:
"""
# node rank using relative slurm id
# otherwise default to node rank 0
try:
node_id = os.environ['SLURM_NODEID']
self.node_rank = int(node_id)
except Exception as e:
self.node_rank = 0
# recover original exp before went into process
# init in write mode only on proc 0
self.experiment.debug = self.proc_rank > 0
self.experiment = self.experiment.get_non_ddp_exp()
# show progbar only on prog_rank 0
self.prog_bar = self.prog_bar and self.node_rank == 0 and gpu_nb == 0
# determine which process we are and world size
self.proc_rank = self.node_rank * len(self.data_parallel_device_ids) + gpu_nb
self.world_size = self.nb_gpu_nodes * len(self.data_parallel_device_ids)
# let the exp know the rank to avoid overwriting logs
self.experiment.rank = self.proc_rank
# set up server using proc 0's ip address
# try to init for 20 times at max in case ports are taken
# where to store ip_table
self.__init_tcp_connection()
# CHOOSE OPTIMIZER
# filter out the weights that were done on gpu so we can load on good old cpus
self.optimizers = model.configure_optimizers()
# MODEL
# copy model to each gpu
torch.cuda.set_device(gpu_nb)
model.cuda(gpu_nb)
# AMP
# run through amp wrapper before going to distributed DP
if self.use_amp:
# An example
model, optimizers = amp.initialize(
model, self.optimizers, opt_level=self.amp_level,
)
self.optimizers = optimizers
model = LightningDistributedDataParallel(model, device_ids=[gpu_nb], find_unused_parameters=True)
# continue training routine
self.__run_pretrain_routine(model)
def __init_tcp_connection(self):
"""
Connect all procs in the world using the env:// init
Use the first node as the root address
:param port:
:param tries:
:return:
"""
# sets the appropriate port
try:
port = os.environ['MASTER_PORT']
except Exception as e:
port = 12910
os.environ['MASTER_PORT'] = f'{port}'
# figure out the root node addr
try:
root_node = os.environ['SLURM_NODELIST'].split(' ')[0]
except Exception as e:
root_node = '127.0.0.2'
root_node = self.resolve_root_node_address(root_node)
os.environ['MASTER_ADDR'] = root_node
dist.init_process_group("nccl", rank=self.proc_rank, world_size=self.world_size)
def resolve_root_node_address(self, root_node):
if '[' in root_node:
name = root_node.split('[')[0]
number = root_node.split(',')[0]
if '-' in number:
number = number.split('-')[0]
number = re.sub('[^0-9]', '', number)
root_node = name + number
return root_node
def __run_pretrain_routine(self, model):
"""
Sanity check a few things before starting actual training
:param model:
:return:
"""
ref_model = model
if self.data_parallel:
ref_model = model.module
ref_model.trainer = self
# set local properties on the model
ref_model.on_gpu = self.on_gpu
# transfer data loaders from model
self.get_dataloaders(ref_model)
# init training constants
self.__layout_bookeeping()
# add lr schedulers
if self.lr_scheduler_milestones is not None:
for optimizer in self.optimizers:
scheduler = MultiStepLR(optimizer, self.lr_scheduler_milestones)
self.lr_schedulers.append(scheduler)
# print model summary
if self.proc_rank == 0 and self.print_weights_summary:
ref_model.summarize()
# give model convenience properties
ref_model.trainer = self
ref_model.experiment = self.experiment
# run tiny validation to make sure program won't crash during val
_ = self.validate(model, self.val_dataloader, max_batches=self.nb_sanity_val_steps)
# save exp to get started
if self.proc_rank == 0:
self.experiment.save()
# track model now.
# if cluster resets state, the model will update with the saved weights
self.model = model
# enable cluster checkpointing
# also restores training state
if self.cluster is not None: # pragma: no cover
self.enable_auto_hpc_walltime_manager()
# ---------------------------
# CORE TRAINING LOOP
# ---------------------------
self.__train()
def __train(self):
# run all epochs
for epoch_nb in range(self.current_epoch, self.max_nb_epochs):
# update the lr scheduler
for lr_scheduler in self.lr_schedulers:
lr_scheduler.step()
model = self.__get_model()
model.current_epoch = epoch_nb
# hook
if self.__is_function_implemented('on_epoch_start'):
model = self.__get_model()
model.on_epoch_start()
self.current_epoch = epoch_nb
self.total_batches = self.nb_tng_batches + self.nb_val_batches
self.batch_loss_value = 0 # accumulated grads
# init progbar when requested
if self.progress_bar:
self.prog_bar = tqdm.tqdm(range(self.total_batches), position=self.process_position)
for batch_nb, data_batch in enumerate(self.tng_dataloader):
self.batch_nb = batch_nb
self.global_step += 1
model = self.__get_model()
model.global_step = self.global_step
# stop when the flag is changed or we've gone past the amount requested in the batches
self.total_batch_nb += 1
met_batch_limit = batch_nb > self.nb_tng_batches
if met_batch_limit:
break
# ---------------
# RUN TRAIN STEP
# ---------------
batch_result = self.__run_tng_batch(data_batch, batch_nb)
early_stop_epoch = batch_result == -1
# ---------------
# RUN VAL STEP
# ---------------
is_val_check_batch = (batch_nb + 1) % self.val_check_batch == 0
if self.fast_dev_run or is_val_check_batch or early_stop_epoch:
self.__run_validation()
# when batch should be saved
if (batch_nb + 1) % self.log_save_interval == 0 or early_stop_epoch:
if self.proc_rank == 0:
self.experiment.save()
# when metrics should be logged
if batch_nb % self.add_log_row_interval == 0 or early_stop_epoch:
# count items in memory
# nb_params, nb_tensors = count_mem_items()
model = self.__get_model()
metrics = self.__tng_tqdm_dic
# add gpu memory
if self.on_gpu:
mem_map = get_gpu_memory_map()
metrics.update(mem_map)
# add norms
if self.track_grad_norm > 0:
model = self.__get_model()
grad_norm_dic = model.grad_norm(self.track_grad_norm)
metrics.update(grad_norm_dic)
if self.__is_function_implemented('on_tng_metrics'):
model.on_tng_metrics(metrics)
# log metrics
scalar_metrics = self.__metrics_to_scalars(metrics, blacklist=self.__log_vals_blacklist())
if self.proc_rank == 0:
self.experiment.log(scalar_metrics, global_step=self.global_step)
self.experiment.save()
# hook
if self.__is_function_implemented('on_batch_end'):
model = self.__get_model()
model.on_batch_end()
# end epoch early
if early_stop_epoch:
break
# hook
if self.__is_function_implemented('on_epoch_end'):
model = self.__get_model()
model.on_epoch_end()
# early stopping
met_min_epochs = epoch_nb > self.min_nb_epochs
if self.enable_early_stop and met_min_epochs:
should_stop = self.early_stop_callback.on_epoch_end(epoch=epoch_nb, logs=self.__tng_tqdm_dic)
# stop training
stop = should_stop and met_min_epochs
if stop:
return
def __metrics_to_scalars(self, metrics, blacklist=[]):
new_metrics = {}
for k, v in metrics.items():
if type(v) is torch.Tensor:
v = v.item()
if type(v) is dict:
v = self.__metrics_to_scalars(v)
if k not in blacklist:
new_metrics[k] = float(v)
return new_metrics
def __log_vals_blacklist(self):
"""avoid logging some vals lightning uses to maintain state"""
blacklist = {'batch_nb', 'v_nb', 'gpu'}
return blacklist
def __run_tng_batch(self, data_batch, batch_nb):
if data_batch is None:
return 0
# hook
if self.__is_function_implemented('on_batch_start'):
model_ref = self.__get_model()
response = model_ref.on_batch_start(data_batch)
if response == -1:
return -1
if self.progress_bar:
self.prog_bar.update(1)
# forward pass
# return a scalar value and a dic with tqdm metrics
if self.use_ddp:
output = self.model(data_batch, batch_nb)
elif self.use_dp:
output = self.model(data_batch, batch_nb)
output = reduce_distributed_output(output, len(self.data_parallel_device_ids))
else:
output = self.model.training_step(data_batch, batch_nb)
try:
model_specific_tqdm_metrics_dic = output['tqdm_metrics']
except Exception as e:
model_specific_tqdm_metrics_dic = {}
# if output dict doesn't have the keyword loss
# then assume the output=loss if scalar
try:
loss = output['loss']
except Exception as e:
if type(output) is torch.Tensor:
loss = output
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
# backward pass
if self.use_amp:
# scale loss when using amp
for optimizer in self.optimizers:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
# insert after step hook
if self.__is_function_implemented('on_after_backward'):
model_ref = self.__get_model()
response = model_ref.on_after_backward()
if self.print_nan_grads:
model = self.__get_model()
for param in model.parameters():
print(param.grad.float().sum())
# avoid memory leaks
self.batch_loss_value += loss.item()
# gradient update with accumulated gradients
if (self.batch_nb + 1) % self.accumulate_grad_batches == 0:
# clip gradients
if self.gradient_clip > 0:
model = self.__get_model()
torch.nn.utils.clip_grad_norm(model.parameters(), self.gradient_clip)
# update gradients across all optimizers
for optimizer in self.optimizers:
optimizer.step()
# insert after step hook
if self.__is_function_implemented('on_before_zero_grad'):
model_ref = self.__get_model()
response = model_ref.on_before_zero_grad(optimizer)
# clear gradients
optimizer.zero_grad()
# queuing loss across batches blows it up proportionally... divide out the number accumulated
self.batch_loss_value = self.batch_loss_value / self.accumulate_grad_batches
# track loss
self.running_loss.append(self.batch_loss_value)
self.batch_loss_value = 0
self.avg_loss = np.mean(self.running_loss[-100:])
# update progbar
if self.progress_bar:
# add model specific metrics
tqdm_metrics = self.__tng_tqdm_dic
self.prog_bar.set_postfix(**tqdm_metrics)
# activate batch end hook
if self.__is_function_implemented('on_batch_end'):
model = self.__get_model()
model.on_batch_end()
return 0
def __run_validation(self):
# decide if can check epochs
can_check_epoch = (self.current_epoch + 1) % self.check_val_every_n_epoch == 0
if self.fast_dev_run:
print('skipping to check performance bc of --fast_dev_run')
elif not can_check_epoch:
return
# hook
if self.__is_function_implemented('on_pre_performance_check'):
model = self.__get_model()
model.on_pre_performance_check()
# use full val set on end of epoch
# use a small portion otherwise
max_batches = None if not self.fast_dev_run else 1
model_specific_tqdm_metrics_dic = self.validate(
self.model,
self.val_dataloader,
max_batches
)
self.__add_tqdm_metrics(model_specific_tqdm_metrics_dic)
# hook
if self.__is_function_implemented('on_post_performance_check'):
model = self.__get_model()
model.on_post_performance_check()
if self.progress_bar:
# add model specific metrics
tqdm_metrics = self.__tng_tqdm_dic
self.prog_bar.set_postfix(**tqdm_metrics)
# model checkpointing
if self.proc_rank == 0 and self.checkpoint_callback is not None:
print('save callback...')
self.checkpoint_callback.on_epoch_end(epoch=self.current_epoch, logs=self.__tng_tqdm_dic)
@@ -1,6 +1,7 @@
from torch.nn import DataParallel
from torch.nn.parallel import DistributedDataParallel
import itertools
from itertools import chain
import threading
import torch
@@ -8,7 +9,7 @@ from torch.cuda._utils import _get_device_index
import pdb
def _find_tensors(obj):
def _find_tensors(obj): # pragma: no cover
r"""
Recursively find all tensors contained in the specified object.
"""
@@ -21,8 +22,7 @@ def _find_tensors(obj):
return []
def get_a_var(obj):
def get_a_var(obj): # pragma: no cover
if isinstance(obj, torch.Tensor):
return obj
@@ -42,6 +42,29 @@ class LightningDataParallel(DataParallel):
Override the forward call in lightning so it goes to training and validation step respectively
"""
def forward(self, *inputs, **kwargs):
if not self.device_ids:
return self.module(*inputs, **kwargs)
for t in chain(self.module.parameters(), self.module.buffers()):
if t.device != self.src_device_obj:
raise RuntimeError("module must have its parameters and buffers "
"on device {} (device_ids[0]) but found one of "
"them on device: {}".format(self.src_device_obj, t.device))
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
if len(self.device_ids) == 1:
# lightning
if self.module.training:
return self.module.training_step(*inputs[0], **kwargs[0])
else:
return self.module.validation_step(*inputs[0], **kwargs[0])
replicas = self.replicate(self.module, self.device_ids[:len(inputs)])
outputs = self.parallel_apply(replicas, inputs, kwargs)
return self.gather(outputs, self.output_device)
def parallel_apply(self, replicas, inputs, kwargs):
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
@@ -54,7 +77,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
def parallel_apply(self, replicas, inputs, kwargs):
return parallel_apply(replicas, inputs, kwargs, self.device_ids[:len(replicas)])
def forward(self, *inputs, **kwargs):
def forward(self, *inputs, **kwargs): # pragma: no cover
self._sync_params()
if self.device_ids:
inputs, kwargs = self.scatter(inputs, kwargs, self.device_ids)
@@ -89,7 +112,7 @@ class LightningDistributedDataParallel(DistributedDataParallel):
return output
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None):
def parallel_apply(modules, inputs, kwargs_tup=None, devices=None): # pragma: no cover
r"""Applies each `module` in :attr:`modules` in parallel on arguments
contained in :attr:`inputs` (positional) and :attr:`kwargs_tup` (keyword)
on each of :attr:`devices`.
@@ -0,0 +1,17 @@
def data_loader(fn):
"""
Decorator to make any fx with this use the lazy property
:param fn:
:return:
"""
attr_name = '_lazy_' + fn.__name__
@property
def _data_loader(self):
if not hasattr(self, attr_name):
setattr(self, attr_name, fn(self))
return getattr(self, attr_name)
return _data_loader
-11
View File
@@ -27,14 +27,3 @@ class GradInformation(nn.Module):
results['grad_{}_norm_total'.format(norm_type)] = round(total_norm.data.cpu().numpy().flatten()[0], 3)
return results
def describe_grads(self):
for p in self.parameters():
g = p.grad.data.numpy().flatten()
print(np.max(g), np.min(g), np.mean(g))
def describe_params(self):
for p in self.parameters():
g = p.data.numpy().flatten()
print(np.max(g), np.min(g), np.mean(g))
+24
View File
@@ -19,3 +19,27 @@ class ModelHooks(torch.nn.Module):
def on_post_performance_check(self):
pass
def on_tng_metrics(self, metrics):
pass
def on_before_zero_grad(self, optimizer):
"""
Called after optimizer.step() and before optimizer.zero_grad()
for optimizer in optimizers:
optimizer.step()
model.on_before_zero_grad(optimizer) # < ---- called here
optimizer.zero_grad
:param optimizer:
:return:
"""
pass
def on_after_backward(self):
"""
Called after loss.backward() and before optimizers do anything
:return:
"""
pass
+48 -27
View File
@@ -33,33 +33,42 @@ class ModelSummary(object):
mods = list(self.model.modules())
in_sizes = []
out_sizes = []
input_ = self.example_input_array
for i in range(1, len(mods)):
m = mods[i]
if type(input_) is list or type(input_) is tuple:
out = m(*input_)
else:
out = m(input_)
input_ = self.model.example_input_array
if type(input_) is tuple or type(input_) is list:
in_size = []
for x in input_:
if type(x) is list:
in_size.append(len(x))
else:
in_size.append(x.size())
else:
in_size = np.array(input_.size())
if self.model.on_gpu:
input_ = input_.cuda(0)
in_sizes.append(in_size)
if self.model.trainer.use_amp:
input_ = input_.half()
if type(out) is tuple or type(out) is list:
out_size = np.asarray([x.size() for x in out])
else:
out_size = np.array(out.size())
with torch.no_grad():
out_sizes.append(out_size)
input_ = out
for i in range(1, len(mods)):
m = mods[i]
if type(input_) is list or type(input_) is tuple: # pragma: no cover
out = m(*input_)
else:
out = m(input_)
if type(input_) is tuple or type(input_) is list: # pragma: no cover
in_size = []
for x in input_:
if type(x) is list:
in_size.append(len(x))
else:
in_size.append(x.size())
else:
in_size = np.array(input_.size())
in_sizes.append(in_size)
if type(out) is tuple or type(out) is list: # pragma: no cover
out_size = np.asarray([x.size() for x in out])
else:
out_size = np.array(out.size())
out_sizes.append(out_size)
input_ = out
self.in_sizes = in_sizes
self.out_sizes = out_sizes
@@ -114,13 +123,22 @@ class ModelSummary(object):
Layer Name, Layer Type, Input Size, Output Size, Number of Parameters
'''
df = pd.DataFrame( np.zeros( (len(self.layer_names), 3) ) )
df.columns = ['Name', 'Type', 'Params']
cols = ['Name', 'Type', 'Params']
if self.model.example_input_array is not None:
cols.extend(['In_sizes', 'Out_sizes'])
df = pd.DataFrame(np.zeros( (len(self.layer_names), len(cols))))
df.columns = cols
df['Name'] = self.layer_names
df['Type'] = self.layer_types
df['Params'] = self.param_nums
if self.model.example_input_array is not None:
df['In_sizes'] = self.in_sizes
df['Out_sizes'] = self.out_sizes
self.summary = df
return
@@ -128,10 +146,13 @@ class ModelSummary(object):
self.get_layer_names()
self.get_parameter_sizes()
self.get_parameter_nums()
if self.model.example_input_array is not None:
self.get_variable_sizes()
self.make_summary()
def print_mem_stack():
def print_mem_stack(): # pragma: no cover
for obj in gc.get_objects():
try:
if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
@@ -140,7 +161,7 @@ def print_mem_stack():
pass
def count_mem_items():
def count_mem_items(): # pragma: no cover
nb_params = 0
nb_tensors = 0
for obj in gc.get_objects():
+49 -28
View File
@@ -2,36 +2,38 @@ import torch
import os
import re
import pdb
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel
from pytorch_lightning.pt_overrides.override_data_parallel import LightningDistributedDataParallel, LightningDataParallel
class ModelIO(object):
def load_model_specific(self, checkpoint):
def on_load_checkpoint(self, checkpoint):
"""
Do something with the checkpoint
Gives model a chance to load something before state_dict is restored
:param checkpoint:
:return:
"""
raise NotImplementedError
pass
def get_save_dict(self):
def on_save_checkpoint(self, checkpoint):
"""
Return specific things for the model
:return:
Give the model a chance to add something to the checkpoint.
state_dict is already there
"""
raise NotImplementedError
pass
# -------------------------
# OPTIONAL HOOKS
# -------------------------
def on_hpc_save(self):
def on_hpc_save(self, checkpoint):
"""
Hook to do whatever you need right before Slurm manager saves the model
:return:
"""
pass
def on_hpc_load(self):
def on_hpc_load(self, checkpoint):
"""
Hook to do whatever you need right before Slurm manager loads the model
:return:
@@ -41,6 +43,11 @@ class ModelIO(object):
class TrainerIO(object):
def __get_model(self):
is_dp_module = type(self.model) is LightningDistributedDataParallel or type(self.model) is LightningDataParallel
model = self.model.module if is_dp_module else self.model
return model
# --------------------
# MODEL SAVE CHECKPOINT
# --------------------
@@ -51,26 +58,32 @@ class TrainerIO(object):
torch.save(checkpoint, filepath)
def dump_checkpoint(self):
checkpoint = {
'epoch': self.current_epoch,
'checkpoint_callback_best': self.checkpoint_callback.best,
'early_stop_callback_wait': self.early_stop_callback.wait,
'early_stop_callback_patience': self.early_stop_callback.patience,
'global_step': self.global_step
}
if self.checkpoint_callback is not None:
checkpoint['checkpoint_callback_best'] = self.checkpoint_callback.best
if self.early_stop_callback is not None:
checkpoint['early_stop_callback_wait'] = self.early_stop_callback.wait
checkpoint['early_stop_callback_patience'] = self.early_stop_callback.patience
optimizer_states = []
for i, optimizer in enumerate(self.optimizers):
optimizer_states.append(optimizer.state_dict())
checkpoint['optimizer_states'] = optimizer_states
# request what to save from the model
model = self.model.module if type(self.model) is LightningDistributedDataParallel else self.model
checkpoint_dict = model.get_save_dict()
# add the state_dict from the model
model = self.__get_model()
checkpoint['state_dict'] = model.state_dict()
# give the model a chance to add a few things
model.on_save_checkpoint(checkpoint)
# merge trainer and model saving items
checkpoint.update(checkpoint_dict)
return checkpoint
# --------------------
@@ -103,9 +116,13 @@ class TrainerIO(object):
:param checkpoint:
:return:
"""
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
if self.checkpoint_callback is not None:
self.checkpoint_callback.best = checkpoint['checkpoint_callback_best']
if self.early_stop_callback is not None:
self.early_stop_callback.wait = checkpoint['early_stop_callback_wait']
self.early_stop_callback.patience = checkpoint['early_stop_callback_patience']
self.global_step = checkpoint['global_step']
self.current_epoch = checkpoint['epoch']
@@ -134,13 +151,15 @@ class TrainerIO(object):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, ckpt_number)
# give model a chance to do something on hpc_save
self.on_hpc_save()
model = self.__get_model()
checkpoint = self.dump_checkpoint()
# request what to save from the model
checkpoint_dict = self.dump_checkpoint()
model.on_hpc_save(checkpoint)
# do the actual save
torch.save(checkpoint_dict, filepath)
torch.save(checkpoint, filepath)
return filepath
def hpc_load(self, folderpath, on_gpu):
filepath = '{}/hpc_ckpt_{}.ckpt'.format(folderpath, self.max_ckpt_in_folder(folderpath))
@@ -150,15 +169,17 @@ class TrainerIO(object):
else:
checkpoint = torch.load(filepath, map_location=lambda storage, loc: storage)
# load training state
# load training state (affects trainer only)
self.restore_training_state(checkpoint)
# load model state
model = self.model.module if type(self.model) is LightningDataParallel else self.model
model.load_model_specific(checkpoint)
model = self.__get_model()
# load the state_dict on the model automatically
model.load_state_dict(checkpoint['state_dict'])
# call model hook
self.on_hpc_load()
model.on_hpc_load(checkpoint)
def max_ckpt_in_folder(self, path):
files = os.listdir(path)
@@ -1,22 +0,0 @@
from torch import nn
from torch import optim
class OptimizerConfig(nn.Module):
def choose_optimizer(self, optimizer, params, optimizer_params, opt_name_key):
if optimizer == 'adam':
optimizer = optim.Adam(params, **optimizer_params)
if optimizer == 'sparse_adam':
optimizer = optim.SparseAdam(params, **optimizer_params)
if optimizer == 'sgd':
optimizer = optim.SGD(params, **optimizer_params)
if optimizer == 'adadelta':
optimizer = optim.Adadelta(params, **optimizer_params)
# transfer opt state if loaded
if opt_name_key in self.loaded_optimizer_states_dict:
state = self.loaded_optimizer_states_dict[opt_name_key]
optimizer.load_state_dict(state)
return optimizer
+28 -59
View File
@@ -1,19 +1,15 @@
import os
import torch
import math
from pytorch_lightning.root_module.memory import ModelSummary
from pytorch_lightning.root_module.grads import GradInformation
from pytorch_lightning.root_module.model_saving import ModelIO, load_hparams_from_tags_csv
from pytorch_lightning.root_module.optimization import OptimizerConfig
from pytorch_lightning.root_module.hooks import ModelHooks
from pytorch_lightning.root_module.decorators import data_loader
class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
class LightningModule(GradInformation, ModelIO, ModelHooks):
def __init__(self, hparams):
super(LightningModule, self).__init__()
self.hparams = hparams
def __init__(self, *args, **kwargs):
super(LightningModule, self).__init__(*args, **kwargs)
self.dtype = torch.FloatTensor
self.exp_save_path = None
@@ -22,15 +18,11 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
self.loaded_optimizer_states_dict = {}
self.trainer = None
self.experiment = None
self.example_input_array = None
# track if gpu was requested for checkpointing
self.on_gpu = False
# computed vars for the dataloaders
self._tng_dataloader = None
self._val_dataloader = None
self._test_dataloader = None
def forward(self, *args, **kwargs):
"""
Expand model in into whatever you need.
@@ -71,37 +63,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
def update_tng_log_metrics(self, logs):
"""
Chance to update metrics to be logged for training step.
For example, add music, images, etc... to log
:param logs:
:return:
"""
raise NotImplementedError
def loss(self, *args, **kwargs):
"""
Expand model_out into your components
:param model_out:
:return:
"""
raise NotImplementedError
def summarize(self):
model_summary = ModelSummary(self)
print(model_summary)
def freeze(self):
for param in self.parameters():
param.requires_grad = False
def unfreeze(self):
for param in self.parameters():
param.requires_grad = True
@property
@data_loader
def tng_dataloader(self):
"""
Implement a function to load an h5py of this data
@@ -109,7 +71,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
@property
@data_loader
def test_dataloader(self):
"""
Implement a function to load an h5py of this data
@@ -117,7 +79,7 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
@property
@data_loader
def val_dataloader(self):
"""
Implement a function to load an h5py of this data
@@ -125,16 +87,6 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
"""
raise NotImplementedError
@staticmethod
def get_process_position(gpus):
try:
current_gpu = os.environ["CUDA_VISIBLE_DEVICES"]
gpu_ids = gpus.split(';')
process_position = gpu_ids.index(current_gpu)
return process_position, current_gpu
except Exception as e:
return 0, 0
@classmethod
def load_from_metrics(cls, weights_path, tags_csv, on_gpu, map_location=None):
"""
@@ -156,9 +108,26 @@ class LightningModule(GradInformation, ModelIO, OptimizerConfig, ModelHooks):
else:
checkpoint = torch.load(weights_path, map_location=lambda storage, loc: storage)
# load the state_dict on the model automatically
model = cls(hparams)
model.load_state_dict(checkpoint['state_dict'])
# give model a chance to load something
model.on_load_checkpoint(checkpoint)
# allow model to load
model.load_model_specific(checkpoint)
model.load_state_dict(checkpoint['state_dict'], strict=False)
return model
def summarize(self):
model_summary = ModelSummary(self)
print(model_summary)
def freeze(self):
for param in self.parameters():
param.requires_grad = False
def unfreeze(self):
for param in self.parameters():
param.requires_grad = True
@@ -0,0 +1,253 @@
import os
from collections import OrderedDict
import torch.nn as nn
from torchvision.datasets import MNIST
import torchvision.transforms as transforms
import torch
import torch.nn.functional as F
from test_tube import HyperOptArgumentParser
from torch import optim
from torch.utils.data import DataLoader
from torch.utils.data.distributed import DistributedSampler
from pytorch_lightning.root_module.root_module import LightningModule
import pytorch_lightning as ptl
class LightningTestModel(LightningModule):
"""
Sample model to show how to define a template
"""
def __init__(self, hparams, force_remove_distributed_sampler=False):
"""
Pass in parsed HyperOptArgumentParser to the model
:param hparams:
"""
# init superclass
super(LightningTestModel, self).__init__()
self.hparams = hparams
self.batch_size = hparams.batch_size
# if you specify an example input, the summary will show input/output for each layer
self.example_input_array = torch.rand(5, 28 * 28)
# remove to test warning for dist sampler
self.force_remove_distributed_sampler = force_remove_distributed_sampler
# build model
self.__build_model()
# ---------------------
# MODEL SETUP
# ---------------------
def __build_model(self):
"""
Layout model
:return:
"""
self.c_d1 = nn.Linear(in_features=self.hparams.in_features, out_features=self.hparams.hidden_dim)
self.c_d1_bn = nn.BatchNorm1d(self.hparams.hidden_dim)
self.c_d1_drop = nn.Dropout(self.hparams.drop_prob)
self.c_d2 = nn.Linear(in_features=self.hparams.hidden_dim, out_features=self.hparams.out_features)
# ---------------------
# TRAINING
# ---------------------
def forward(self, x):
"""
No special modification required for lightning, define as you normally would
:param x:
:return:
"""
x = self.c_d1(x)
x = torch.tanh(x)
x = self.c_d1_bn(x)
x = self.c_d1_drop(x)
x = self.c_d2(x)
logits = F.log_softmax(x, dim=1)
return logits
def loss(self, labels, logits):
nll = F.nll_loss(logits, labels)
return nll
def training_step(self, data_batch, batch_i):
"""
Lightning calls this inside the training loop
:param data_batch:
:return:
"""
# forward pass
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
# calculate loss
loss_val = self.loss(y, y_hat)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
output = OrderedDict({
'loss': loss_val
})
# can also return just a scalar instead of a dict (return loss_val)
return output
def validation_step(self, data_batch, batch_i):
"""
Lightning calls this inside the validation loop
:param data_batch:
:return:
"""
x, y = data_batch
x = x.view(x.size(0), -1)
y_hat = self.forward(x)
loss_val = self.loss(y, y_hat)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
if self.on_gpu:
val_acc = val_acc.cuda(loss_val.device.index)
# in DP mode (default) make sure if result is scalar, there's another dim in the beginning
if self.trainer.use_dp:
loss_val = loss_val.unsqueeze(0)
val_acc = val_acc.unsqueeze(0)
# alternate possible outputs to test
if self.trainer.batch_nb % 1 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
})
return output
if self.trainer.batch_nb % 2 == 0:
return val_acc
if self.trainer.batch_nb % 3 == 0:
output = OrderedDict({
'val_loss': loss_val,
'val_acc': val_acc,
'test_dic': {'val_loss_a': loss_val}
})
return output
def validation_end(self, outputs):
"""
Called at the end of validation to aggregate outputs
:param outputs: list of individual outputs of each validation step
:return:
"""
# if returned a scalar from validation_step, outputs is a list of tensor scalars
# we return just the average in this case (if we want)
# return torch.stack(outputs).mean()
val_loss_mean = 0
val_acc_mean = 0
for output in outputs:
val_loss_mean += output['val_loss']
val_acc_mean += output['val_acc']
val_loss_mean /= len(outputs)
val_acc_mean /= len(outputs)
tqdm_dic = {'val_loss': val_loss_mean.item(), 'val_acc': val_acc_mean.item()}
return tqdm_dic
def on_tng_metrics(self, logs):
logs['some_tensor_to_test'] = torch.rand(1)
# ---------------------
# TRAINING SETUP
# ---------------------
def configure_optimizers(self):
"""
return whatever optimizers we want here
:return: list of optimizers
"""
optimizer = optim.Adam(self.parameters(), lr=self.hparams.learning_rate)
return [optimizer]
def __dataloader(self, train):
# init data generators
transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.5,), (1.0,))])
dataset = MNIST(root=self.hparams.data_root, train=train, transform=transform, download=True)
# when using multi-node we need to add the datasampler
train_sampler = None
batch_size = self.hparams.batch_size
try:
if self.on_gpu and not self.force_remove_distributed_sampler:
train_sampler = DistributedSampler(dataset, rank=self.trainer.proc_rank)
batch_size = batch_size // self.trainer.world_size # scale batch size
except Exception as e:
pass
should_shuffle = train_sampler is None
loader = DataLoader(
dataset=dataset,
batch_size=batch_size,
shuffle=should_shuffle,
sampler=train_sampler
)
return loader
@ptl.data_loader
def tng_dataloader(self):
return self.__dataloader(train=True)
@ptl.data_loader
def val_dataloader(self):
return self.__dataloader(train=False)
@ptl.data_loader
def test_dataloader(self):
return self.__dataloader(train=False)
@staticmethod
def add_model_specific_args(parent_parser, root_dir):
"""
Parameters you define here will be available to your model through self.hparams
:param parent_parser:
:param root_dir:
:return:
"""
parser = HyperOptArgumentParser(strategy=parent_parser.strategy, parents=[parent_parser])
# param overwrites
# parser.set_defaults(gradient_clip=5.0)
# network params
parser.opt_list('--drop_prob', default=0.2, options=[0.2, 0.5], type=float, tunable=False)
parser.add_argument('--in_features', default=28*28, type=int)
parser.add_argument('--out_features', default=10, type=int)
parser.add_argument('--hidden_dim', default=50000, type=int) # use 500 for CPU, 50000 for GPU to see speed difference
# data
parser.add_argument('--data_root', default=os.path.join(root_dir, 'mnist'), type=str)
# training params (opt)
parser.opt_list('--learning_rate', default=0.001*8, type=float, options=[0.0001, 0.0005, 0.001, 0.005],
tunable=False)
parser.opt_list('--optimizer_name', default='adam', type=str, options=['adam'], tunable=False)
# if using 2 nodes with 4 gpus each the batch size here (256) will be 256 / (2*8) = 16 per gpu
parser.opt_list('--batch_size', default=256*8, type=int, options=[32, 64, 128, 256], tunable=False,
help='batch size will be divided over all the gpus being used across all nodes')
return parser
-4
View File
@@ -52,10 +52,6 @@ def main(hparams, cluster, results_dict):
hparams.__setattr__('nb_gpus', torch.cuda.device_count())
hparams.__setattr__('inference_mode', hparams.model_load_weights_path is not None)
# delay each training start to not overwrite logs
process_position, current_gpu = TRAINING_MODEL.get_process_position(hparams.gpus)
sleep(process_position + 1)
# init experiment
exp = Experiment(
name=hparams.tt_name,
+5
View File
@@ -0,0 +1,5 @@
import pdb
import sys
class MisconfigurationException(Exception):
pass
-104
View File
@@ -1,104 +0,0 @@
import torch
import numpy as np
from copy import deepcopy
class PretrainedEmbedding(torch.nn.Embedding):
def __init__(self, embedding_path, embedding_dim, task_vocab, freeze=True, *args, **kwargs):
"""
Loads a prebuilt pytorch embedding from any embedding formated file.
Padding=0 by default.
>>> emb = PretrainedEmbedding(embedding_path='glove.840B.300d.txt',embedding_dim=300, task_vocab={'hello': 1, 'world': 2})
>>> data = torch.Tensor([[0, 1], [0, 2]]).long()
>>> embedded = emb(data)
:param embedding_path:
:param emb_dim:
:param task_vocab:
:param freeze:
:return:
"""
# count the vocab
self.vocab_size = max(task_vocab.values()) + 1
super(PretrainedEmbedding, self).__init__(self.vocab_size, embedding_dim, padding_idx=0, *args, **kwargs)
# load pretrained embeddings
new_emb = self.__load_task_specific_embeddings(deepcopy(task_vocab), embedding_path, embedding_dim, freeze)
# transfer weights
self.weight = new_emb.weight
# apply freeze
should_freeze = not freeze
self.weight.requires_grad = should_freeze
def __load_task_specific_embeddings(self, vocab_words, embedding_path, emb_dim, freeze):
"""
Iterates embedding file to only pull out task specific embeddings
:param vocab_words:
:param embedding_path:
:param emb_dim:
:param freeze:
:return:
"""
# holds final embeddings for relevant words
embeddings = np.zeros(shape=(self.vocab_size, emb_dim))
# load embedding line by line and extract relevant embeddings
with open(embedding_path, encoding='utf-8') as f:
for line in f:
tokens = line.split(' ')
word = tokens[0]
embedding = tokens[1:]
embedding[-1] = embedding[-1][:-1] # remove last new line
if word in vocab_words:
vocab_word_i = vocab_words[word]
# skip words that try to overwrite pad idx
if vocab_word_i == 0:
del vocab_words[word]
continue
emb_vals = np.asarray([float(x) for x in embedding])
embeddings[vocab_word_i] = emb_vals
# remove vocab word to early terminate
del vocab_words[word]
# early break
if len(vocab_words) == 0:
break
# add random vectors for the non-pretrained words
# these are vocab words NOT found in the pretrained embeddings
for w, i in vocab_words.items():
# skip words that try to overwrite pad idx
if i == 0:
continue
embedding = np.random.normal(size=emb_dim)
embeddings[i] = embedding
# turn into pt embedding
embeddings = torch.FloatTensor(embeddings)
embeddings = torch.nn.Embedding.from_pretrained(embeddings, freeze=freeze)
return embeddings
if __name__ == '__main__':
emb = PretrainedEmbedding(
embedding_path='/Users/waf/Developer',
embedding_dim=300,
task_vocab={'hello': 1, 'world': 2}
)
data = torch.Tensor([[0, 1], [0, 2]]).long()
embedded = emb(data)
print(embedded)
-28
View File
@@ -1,28 +0,0 @@
from matplotlib import pyplot as plt
import numpy as np
np.seterr(divide='ignore', invalid='ignore')
def plot_confusion_matrix(cm,
save_path,
normalize=False,
title='Confusion matrix',
ylabel='y',
xlabel='x'):
"""
This function prints and plots the confusion matrix.
Normalization can be applied by setting `normalize=True`.
"""
if normalize:
cm = cm.astype('float') / cm.sum(axis=1)[:, np.newaxis]
print("Normalized confusion matrix")
else:
print('Confusion matrix, without normalization')
fig = plt.figure()
plt.matshow(cm)
plt.title(title)
plt.colorbar()
plt.ylabel(ylabel)
plt.xlabel(xlabel)
plt.savefig(save_path)
+6 -32
View File
@@ -1,35 +1,9 @@
atomicwrites==1.2.1
attrs==18.2.0
certifi==2018.11.29
cffi==1.11.5
imageio==2.4.1
mkl-fft==1.0.6
mkl-random==1.0.2
more-itertools==5.0.0
numpy==1.15.4
olefile==0.46
pandas==0.23.4
Pillow==5.3.0
pluggy==0.8.0
py==1.7.0
pycparser==2.19
pytest==4.0.2
python-dateutil==2.7.5
pytz==2018.7
coverage==4.5.3
mkdocs==1.0.4
pytest==5.0.1
scikit-learn==0.20.2
scipy==1.2.0
six==1.12.0
sklearn==0.0
tensorboard==1.14.0
tensorboardX==1.7
tensorflow==1.14.0
test-tube==0.643
torch==1.0.0
torchvision==0.2.1
tqdm==4.32.1
twine==1.13.0
urllib3==1.25.3
webencodings==0.5.1
Werkzeug==0.15.4
wrapt==1.11.2
numpy==1.16.4
torch>=1.1.0
torchvision==0.3.0
+27
View File
@@ -16,6 +16,33 @@ markers =
ignore = E731,W504
max-line-length = 120
[coverage:report]
exclude_lines =
pragma: no cover
def __repr__
if self.debug:
if settings.DEBUG
raise AssertionError
raise NotImplementedError
if 0:
if __name__ == .__main__.:
except Exception as e
print(e)
print(traceback.print_exc())
return *
raise Exception
warnings
print
raise RuntimeError
break
pass
os.makedirs
omit =
pytorch_lightning/callbacks/pt_callbacks.py
tests/test_models.py
pytorch_lightning/testing_models/lm_test_module.py
[flake8]
ignore = E731,W504,F401,F841
max-line-length = 120
+2 -3
View File
@@ -7,7 +7,7 @@ from setuptools import setup, find_packages
# http://blog.ionelmc.ro/2014/05/25/python-packaging/
setup(
name="pytorch-lightning",
version='0.21',
version='0.3.6.4',
description="The Keras for ML researchers using PyTorch",
author="William Falcon",
author_email="waf2107@columbia.edu",
@@ -19,8 +19,7 @@ setup(
install_requires=[
"torch>=1.1.0",
"tqdm",
"test-tube>=0.653",
"tensorflow>=1.14.0"
"test-tube>=0.6.7.4",
],
packages=find_packages(),
long_description=open("README.md", encoding="utf-8").read(),
+58
View File
@@ -0,0 +1,58 @@
# Pytorch-Lightning Tests
## Running tests
The automatic travis tests ONLY run CPU-based tests. Although these cover most of the use cases,
run on a 2-GPU machine to validate the full test-suite.
To run all tests do the following:
```bash
git clone https://github.com/williamFalcon/pytorch-lightning
cd pytorch-lightning
# install module locally
pip install -e .
# install dev deps
pip install -r requirements.txt
# run tests
py.test
```
To test models that require GPU make sure to run the above command on a GPU machine.
The GPU machine must have:
1. At least 2 GPUs.
2. [NVIDIA-apex](https://github.com/NVIDIA/apex#linux) installed.
### test_models.py
This file fits a tiny model on MNIST using these different set-ups.
1. CPU only.
2. Single GPU with DP.
3. Multiple (2) GPUs using DP.
3. Multiple (2) GPUs using DDP.
3. Multiple (2) GPUs using DP + apex (for 16-bit precision).
3. Multiple (2) GPUs using DDP + apex (for 16-bit precision).
For each set up it also tests:
1. model saving.
2. model loading.
3. predicting with a loaded model.
4. simulated save from HPC signal.
5. simulated load from HPC signal.
## Running Coverage
```bash
cd pytorch-lightning
# generate coverage
pip install coverage
coverage run tests/test_models.py
# print coverage stats
coverage report -m
```
View File
+180
View File
@@ -0,0 +1,180 @@
import pytest
from pytorch_lightning import Trainer
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from argparse import Namespace
from test_tube import Experiment
from pytorch_lightning.callbacks import ModelCheckpoint
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
import pytorch_lightning as ptl
import torch
from torch.nn import functional as F
from torch.utils.data import DataLoader
from torchvision.datasets import MNIST
class CoolModel(ptl.LightningModule):
def __init(self):
super(CoolModel, self).__init__()
# not the best model...
self.l1 = torch.nn.Linear(28 * 28, 10)
def forward(self, x):
return torch.relu(self.l1(x))
def my_loss(self, y_hat, y):
return F.cross_entropy(y_hat, y)
def training_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'tng_loss': self.my_loss(y_hat, y)}
def validation_step(self, batch, batch_nb):
x, y = batch
y_hat = self.forward(x)
return {'val_loss': self.my_loss(y_hat, y)}
def validation_end(self, outputs):
avg_loss = torch.stack([x for x in outputs['val_loss']]).mean()
return avg_loss
def configure_optimizers(self):
return [torch.optim.Adam(self.parameters(), lr=0.02)]
@ptl.data_loader
def tng_dataloader(self):
return DataLoader(MNIST('path/to/save', train=True), batch_size=32)
@ptl.data_loader
def val_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
@ptl.data_loader
def test_dataloader(self):
return DataLoader(MNIST('path/to/save', train=False), batch_size=32)
def get_model():
# set up model with these hyperparams
root_dir = os.path.dirname(os.path.realpath(__file__))
hparams = Namespace(**{'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
'hidden_dim': 1000})
model = LightningTemplateModel(hparams)
return model, hparams
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
def init_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
os.makedirs(save_dir, exist_ok=True)
return save_dir
def clear_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
def load_model(exp, save_dir):
# load trained model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir, tags_csv=tags_path, on_gpu=True)
assert trained_model is not None, 'loading model failed'
return trained_model
def run_prediction(dataloader, trained_model):
# run prediction on 1 batch
for batch in dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
y_hat = trained_model(x)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
val_acc = val_acc.item()
print(val_acc)
assert val_acc > 0.70, f'this model is expected to get > 0.7 in test set (it got {val_acc})'
def main():
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
trainer = Trainer(
experiment=exp,
checkpoint_callback=checkpoint,
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='dp',
)
model = CoolModel()
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
clear_save_dir()
if __name__ == '__main__':
main()
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import pytest
from pytorch_lightning import Trainer
from pytorch_lightning.examples.new_project_templates.lightning_module_template import LightningTemplateModel
from pytorch_lightning.testing_models.lm_test_module import LightningTestModel
from argparse import Namespace
from test_tube import Experiment, SlurmCluster
from pytorch_lightning.callbacks import ModelCheckpoint, EarlyStopping
from pytorch_lightning.utils.debugging import MisconfigurationException
from pytorch_lightning.root_module import memory
from pytorch_lightning.models.trainer import reduce_distributed_output
from pytorch_lightning.root_module import model_saving
import numpy as np
import warnings
import torch
import os
import shutil
import pdb
SEED = 2334
torch.manual_seed(SEED)
np.random.seed(SEED)
# ------------------------------------------------------------------------
# TESTS
# ------------------------------------------------------------------------
def test_cpu_slurm_save_load():
"""
Verify model save/load/checkpoint on CPU
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
cluster_a = SlurmCluster()
trainer_options = dict(
max_nb_epochs=1,
cluster=cluster_a,
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir)
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
real_global_step = trainer.global_step
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
# predict with trained model before saving
# make a prediction
for batch in model.test_dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
model.eval()
pred_before_saving = model(x)
# test registering a save function
trainer.enable_auto_hpc_walltime_manager()
# test HPC saving
# simulate snapshot on slurm
saved_filepath = trainer.hpc_save(save_dir, exp)
assert os.path.exists(saved_filepath)
# wipe-out trainer and model
# retrain with not much data... this simulates picking training back up after slurm
# we want to see if the weights come back correctly
continue_tng_hparams = get_hparams(continue_training=True, hpc_exp_number=cluster_a.hpc_exp_number)
trainer_options = dict(
max_nb_epochs=1,
cluster=SlurmCluster(continue_tng_hparams),
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir),
)
trainer = Trainer(**trainer_options)
model = LightningTestModel(hparams)
# set the epoch start hook so we can predict before the model does the full training
def assert_pred_same():
assert trainer.global_step == real_global_step and trainer.global_step > 0
# predict with loaded model to make sure answers are the same
trainer.model.eval()
new_pred = trainer.model(x)
assert torch.all(torch.eq(pred_before_saving, new_pred)).item() == 1
model.on_epoch_start = assert_pred_same
# by calling fit again, we trigger training, loading weights from the cluster
# and our hook to predict using current model before any more weight updates
trainer.fit(model)
clear_save_dir()
def test_loading_meta_tags():
hparams = get_hparams()
save_dir = init_save_dir()
# save tags
exp = get_exp(False)
exp.tag({'some_str':'a_str', 'an_int': 1, 'a_float': 2.0})
exp.argparse(hparams)
exp.save()
# load tags
tags_path = exp.get_data_path(exp.name, exp.version) + '/meta_tags.csv'
tags = model_saving.load_hparams_from_tags_csv(tags_path)
assert tags.batch_size == 32 and tags.hidden_dim == 1000
clear_save_dir()
def test_dp_output_reduce():
# test identity when we have a single gpu
out = torch.rand(3, 1)
assert reduce_distributed_output(out, nb_gpus=1) is out
# average when we have multiples
assert reduce_distributed_output(out, nb_gpus=2) == out.mean()
# when we have a dict of vals
out = {
'a': out,
'b': {
'c': out
}
}
reduced = reduce_distributed_output(out, nb_gpus=3)
assert reduced['a'] == out['a']
assert reduced['b']['c'] == out['b']['c']
def test_model_saving_loading():
"""
Tests use case where trainer saves the model, and user loads it from tags independently
:return:
"""
hparams = get_hparams()
model = LightningTestModel(hparams)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
trainer_options = dict(
max_nb_epochs=1,
cluster=SlurmCluster(),
experiment=exp,
checkpoint_callback=ModelCheckpoint(save_dir)
)
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# traning complete
assert result == 1, 'amp + ddp model failed to complete'
# make a prediction
for batch in model.test_dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
# generate preds before saving model
model.eval()
pred_before_saving = model(x)
# save model
new_weights_path = os.path.join(save_dir, 'save_test.ckpt')
trainer.save_checkpoint(new_weights_path)
# load new model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
model_2 = LightningTestModel.load_from_metrics(weights_path=new_weights_path, tags_csv=tags_path, on_gpu=False)
model_2.eval()
# make prediction
# assert that both predictions are the same
new_pred = model_2(x)
assert torch.all(torch.eq(pred_before_saving, new_pred)).item() == 1
clear_save_dir()
def test_model_freeze_unfreeze():
hparams = get_hparams()
model = LightningTestModel(hparams)
model.freeze()
model.unfreeze()
def test_amp_gpu_ddp_slurm_managed():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
# simulate setting slurm flags
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
os.environ['SLURM_LOCALID'] = str(0)
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
progress_bar=True,
max_nb_epochs=1,
gpus=[0],
distributed_backend='ddp',
use_amp=True
)
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
# fit model
trainer = Trainer(**trainer_options)
trainer.is_slurm_managing_tasks = True
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test root model address
assert trainer.resolve_root_node_address('abc') == 'abc'
assert trainer.resolve_root_node_address('abc[23]') == 'abc23'
assert trainer.resolve_root_node_address('abc[23-24]') == 'abc23'
assert trainer.resolve_root_node_address('abc[23-24, 45-40, 40]') == 'abc23'
# test model loading with a map_location
map_location = 'cuda:1'
pretrained_model = load_model(exp, save_dir, True, map_location)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=True)
# test freeze on gpu
model.freeze()
model.unfreeze()
clear_save_dir()
def test_early_stopping_cpu_model():
"""
Test each of the trainer options
:return:
"""
stopping = EarlyStopping()
trainer_options = dict(
early_stop_callback=stopping,
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
progress_bar=False,
experiment=get_exp(),
train_percent_check=0.1,
val_percent_check=0.1
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
# test freeze on cpu
model.freeze()
model.unfreeze()
def test_cpu_model_with_amp():
"""
Make sure model trains on CPU
:return:
"""
trainer_options = dict(
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4,
use_amp=True
)
model, hparams = get_model()
with pytest.raises((MisconfigurationException, ModuleNotFoundError)):
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_cpu_model():
"""
Make sure model trains on CPU
:return:
"""
trainer_options = dict(
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_all_features_cpu_model():
"""
Test each of the trainer options
:return:
"""
trainer_options = dict(
gradient_clip=1.0,
overfit_pct=0.20,
track_grad_norm=2,
print_nan_grads=True,
progress_bar=False,
experiment=get_exp(),
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.4
)
model, hparams = get_model()
run_gpu_model_test(trainer_options, model, hparams, on_gpu=False)
def test_single_gpu_model():
"""
Make sure single GPU works (DP mode)
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_single_gpu_model cannot run. Rerun on a GPU node to run this test')
return
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
gpus=[0]
)
run_gpu_model_test(trainer_options, model, hparams)
def test_multi_gpu_model_dp():
"""
Make sure DP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.1,
val_percent_check=0.1,
gpus='-1'
)
run_gpu_model_test(trainer_options, model, hparams)
# test memory helper functions
memory.get_gpu_memory_map()
def test_amp_gpu_dp():
"""
Make sure DP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_dp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
model, hparams = get_model()
trainer_options = dict(
max_nb_epochs=1,
gpus='0, 1', # test init with gpu string
distributed_backend='dp',
use_amp=True
)
with pytest.raises(MisconfigurationException):
run_gpu_model_test(trainer_options, model, hparams)
def test_multi_gpu_model_ddp():
"""
Make sure DDP works
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_multi_gpu_model_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
model, hparams = get_model()
trainer_options = dict(
progress_bar=False,
max_nb_epochs=1,
train_percent_check=0.4,
val_percent_check=0.2,
gpus=[0, 1],
distributed_backend='ddp'
)
run_gpu_model_test(trainer_options, model, hparams)
def test_amp_gpu_ddp():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams)
trainer_options = dict(
progress_bar=True,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
run_gpu_model_test(trainer_options, model, hparams)
def test_ddp_sampler_error():
"""
Make sure DDP + AMP work
:return:
"""
if not torch.cuda.is_available():
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a GPU node to run this test')
return
if not torch.cuda.device_count() > 1:
warnings.warn('test_amp_gpu_ddp cannot run. Rerun on a node with 2+ GPUs to run this test')
return
os.environ['MASTER_PORT'] = str(np.random.randint(12000, 19000, 1)[0])
hparams = get_hparams()
model = LightningTestModel(hparams, force_remove_distributed_sampler=True)
exp = get_exp(True)
exp.save()
trainer = Trainer(
experiment=exp,
progress_bar=False,
max_nb_epochs=1,
gpus=[0, 1],
distributed_backend='ddp',
use_amp=True
)
with pytest.raises(MisconfigurationException):
trainer.get_dataloaders(model)
clear_save_dir()
# ------------------------------------------------------------------------
# UTILS
# ------------------------------------------------------------------------
def run_gpu_model_test(trainer_options, model, hparams, on_gpu=True):
save_dir = init_save_dir()
# exp file to get meta
exp = get_exp(False)
exp.argparse(hparams)
exp.save()
# exp file to get weights
checkpoint = ModelCheckpoint(save_dir)
# add these to the trainer options
trainer_options['checkpoint_callback'] = checkpoint
trainer_options['experiment'] = exp
# fit model
trainer = Trainer(**trainer_options)
result = trainer.fit(model)
# correct result and ok accuracy
assert result == 1, 'amp + ddp model failed to complete'
# test model loading
pretrained_model = load_model(exp, save_dir, on_gpu)
# test model preds
run_prediction(model.test_dataloader, pretrained_model)
if trainer.use_ddp:
# on hpc this would work fine... but need to hack it for the purpose of the test
trainer.model = pretrained_model
trainer.optimizers = pretrained_model.configure_optimizers()
# test HPC loading / saving
trainer.hpc_save(save_dir, exp)
trainer.hpc_load(save_dir, on_gpu=on_gpu)
clear_save_dir()
def get_hparams(continue_training=False, hpc_exp_number=0):
root_dir = os.path.dirname(os.path.realpath(__file__))
args = {
'drop_prob': 0.2,
'batch_size': 32,
'in_features': 28*28,
'learning_rate': 0.001*8,
'optimizer_name': 'adam',
'data_root': os.path.join(root_dir, 'mnist'),
'out_features': 10,
'hidden_dim': 1000}
if continue_training:
args['test_tube_do_checkpoint_load'] = True
args['hpc_exp_number'] = hpc_exp_number
hparams = Namespace(**args)
return hparams
def get_model():
# set up model with these hyperparams
hparams = get_hparams()
model = LightningTemplateModel(hparams)
return model, hparams
def get_exp(debug=True):
# set up exp object without actually saving logs
root_dir = os.path.dirname(os.path.realpath(__file__))
exp = Experiment(debug=debug, save_dir=root_dir, name='tests_tt_dir')
return exp
def init_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
os.makedirs(save_dir, exist_ok=True)
return save_dir
def clear_save_dir():
root_dir = os.path.dirname(os.path.realpath(__file__))
save_dir = os.path.join(root_dir, 'save_dir')
if os.path.exists(save_dir):
shutil.rmtree(save_dir)
def load_model(exp, save_dir, on_gpu, map_location=None):
# load trained model
tags_path = exp.get_data_path(exp.name, exp.version)
tags_path = os.path.join(tags_path, 'meta_tags.csv')
checkpoints = [x for x in os.listdir(save_dir) if '.ckpt' in x]
weights_dir = os.path.join(save_dir, checkpoints[0])
trained_model = LightningTemplateModel.load_from_metrics(weights_path=weights_dir,
tags_csv=tags_path,
on_gpu=on_gpu,
map_location=map_location)
assert trained_model is not None, 'loading model failed'
return trained_model
def run_prediction(dataloader, trained_model):
# run prediction on 1 batch
for batch in dataloader:
break
x, y = batch
x = x.view(x.size(0), -1)
y_hat = trained_model(x)
# acc
labels_hat = torch.argmax(y_hat, dim=1)
val_acc = torch.sum(y == labels_hat).item() / (len(y) * 1.0)
val_acc = torch.tensor(val_acc)
val_acc = val_acc.item()
print(val_acc)
assert val_acc > 0.50, f'this model is expected to get > 0.50 in test set (it got {val_acc})'
def assert_ok_acc(trainer):
# this model should get 0.80+ acc
acc = trainer.tng_tqdm_dic['val_acc']
assert acc > 0.50, f'model failed to get expected 0.50 validation accuracy. Got: {acc}'
if __name__ == '__main__':
pytest.main([__file__])